Wall clock time and date at job start Mon Mar 30 2020 06:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 116.99694 * 2 1 4 4 C 1.38735 * 120.05254 * 179.97438 * 3 2 1 5 5 C 1.38144 * 119.94607 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05233 * 0.02562 * 5 4 3 7 7 C 1.50708 * 119.94156 * 179.97438 * 6 5 4 8 8 H 1.08999 * 110.88461 * 180.70052 * 7 6 5 9 9 C 1.55159 * 111.00405 * 56.82090 * 7 6 5 10 10 C 1.54317 * 102.93714 * 206.42459 * 9 7 6 11 11 H 1.09001 * 109.87953 * 141.61205 * 10 9 7 12 12 C 1.53003 * 109.88132 * 262.76933 * 10 9 7 13 13 N 1.47012 * 107.27815 * 22.19229 * 10 9 7 14 14 C 1.36945 * 125.65322 * 181.00345 * 13 10 9 15 15 H 1.07997 * 119.99529 * 0.02562 * 14 13 10 16 16 C 1.38804 * 120.00064 * 180.02562 * 14 13 10 17 17 N 1.31618 * 120.00168 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99980 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47300 * 59.99446 * 18 16 14 20 20 H 1.48499 * 109.47168 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46800 * 299.99584 * 18 16 14 22 22 C 1.47473 * 108.72226 * 1.02421 * 13 10 9 23 23 C 1.38269 * 120.11595 * 359.95530 * 6 5 4 24 24 C 1.38142 * 120.04935 * 0.04230 * 23 6 5 25 25 H 1.08998 * 109.47042 * 60.00021 * 1 2 3 26 26 H 1.08999 * 109.47436 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47292 * 300.00273 * 1 2 3 28 28 H 1.08002 * 120.02704 * 359.70561 * 4 3 2 29 29 H 1.08001 * 119.97447 * 179.97438 * 5 4 3 30 30 H 1.09002 * 110.71469 * 324.78600 * 9 7 6 31 31 H 1.08998 * 110.71905 * 88.05811 * 9 7 6 32 32 H 1.09006 * 109.46815 * 60.00870 * 12 10 9 33 33 H 1.09002 * 109.47136 * 180.02562 * 12 10 9 34 34 H 1.09001 * 109.47654 * 300.00947 * 12 10 9 35 35 H 0.97008 * 120.00270 * 179.97438 * 17 16 14 36 36 H 1.08995 * 110.40449 * 217.08374 * 22 13 10 37 37 H 1.09004 * 110.34643 * 94.74305 * 22 13 10 38 38 H 1.07992 * 119.97577 * 180.02562 * 23 6 5 39 39 H 1.08005 * 120.02748 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6758 -0.0005 7 6 3.9861 5.0186 -0.0005 8 1 3.2552 5.8271 0.0115 9 6 4.9454 5.1539 -1.2125 10 6 5.9933 6.1702 -0.7119 11 1 6.9838 5.8872 -1.0683 12 6 5.6384 7.5722 -1.2113 13 7 5.9632 6.1403 0.7576 14 6 6.7316 6.9124 1.5875 15 1 7.4343 7.6188 1.1708 16 6 6.6074 6.7871 2.9643 17 7 5.7507 5.9266 3.4722 18 14 7.6550 7.8408 4.0964 19 1 7.3718 9.2757 3.8397 20 1 7.3342 7.5186 5.5101 21 1 9.0916 7.5661 3.8394 22 6 4.9690 5.1408 1.1905 23 6 1.9210 3.6048 -0.0015 24 6 1.2916 2.3751 -0.0010 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 4.0208 0.3799 0.0058 29 1 5.1345 2.5750 0.0008 30 1 5.4147 4.1971 -1.4415 31 1 4.4156 5.5428 -2.0821 32 1 4.6553 7.8541 -0.8341 33 1 6.3826 8.2842 -0.8544 34 1 5.6245 7.5771 -2.3012 35 1 5.6641 5.8387 4.4344 36 1 4.4447 5.4874 2.0810 37 1 5.4531 4.1833 1.3827 38 1 1.3342 4.5114 -0.0023 39 1 0.2129 2.3201 -0.0013 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076390306.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:22 Heat of formation + Delta-G solvation = -8.675297 kcal Electronic energy + Delta-G solvation = -19575.595820 eV Core-core repulsion = 16676.283482 eV Total energy + Delta-G solvation = -2899.312339 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.14194 -39.75682 -37.98577 -34.67470 -33.01208 -32.01131 -30.98588 -29.59138 -28.03905 -26.75417 -25.71907 -23.63838 -23.16112 -21.19265 -20.61249 -19.09660 -18.70501 -17.27120 -16.83482 -16.57021 -16.53109 -15.71089 -15.56178 -14.72801 -14.59038 -14.51007 -14.21552 -13.84455 -13.78345 -13.63189 -13.15249 -13.10513 -12.86310 -12.70059 -12.61812 -12.50591 -12.15902 -11.95041 -11.74818 -11.60892 -11.34830 -11.27476 -11.17184 -10.69835 -9.88435 -8.96016 -8.80586 -7.71725 -5.15722 0.45339 0.51805 1.46686 1.49598 1.55885 2.43661 2.52142 2.83992 3.36938 3.63742 3.88410 3.98133 4.05222 4.15660 4.26044 4.35521 4.42632 4.44273 4.51986 4.53976 4.69577 4.72687 4.73682 4.79543 4.86028 4.99116 5.11841 5.13388 5.24180 5.31943 5.37903 5.47661 5.53577 5.58767 5.71206 5.86054 5.87364 5.92341 6.36154 6.51934 7.16085 7.85375 8.49665 9.29216 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.026748 B = 0.004950 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.569736 B = 5655.571897 C = 6291.591455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.108 3.892 4 C -0.160 4.160 5 C -0.082 4.082 6 C -0.102 4.102 7 C -0.062 4.062 8 H 0.075 0.925 9 C -0.103 4.103 10 C 0.141 3.859 11 H 0.026 0.974 12 C -0.142 4.142 13 N -0.620 5.620 14 C -0.229 4.229 15 H 0.079 0.921 16 C -0.069 4.069 17 N -0.950 5.950 18 Si 0.975 3.025 19 H -0.277 1.277 20 H -0.295 1.295 21 H -0.280 1.280 22 C 0.173 3.827 23 C -0.084 4.084 24 C -0.202 4.202 25 H 0.066 0.934 26 H 0.119 0.881 27 H 0.060 0.940 28 H 0.135 0.865 29 H 0.118 0.882 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.042 0.958 33 H 0.034 0.966 34 H 0.074 0.926 35 H 0.244 0.756 36 H 0.066 0.934 37 H -0.011 1.011 38 H 0.138 0.862 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.924 -7.946 -10.200 16.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.063 3.937 4 C -0.179 4.179 5 C -0.100 4.100 6 C -0.103 4.103 7 C -0.082 4.082 8 H 0.094 0.906 9 C -0.141 4.141 10 C 0.035 3.965 11 H 0.044 0.956 12 C -0.201 4.201 13 N -0.345 5.345 14 C -0.358 4.358 15 H 0.097 0.903 16 C -0.261 4.261 17 N -0.600 5.600 18 Si 0.804 3.196 19 H -0.203 1.203 20 H -0.222 1.222 21 H -0.206 1.206 22 C 0.047 3.953 23 C -0.102 4.102 24 C -0.221 4.221 25 H 0.085 0.915 26 H 0.137 0.863 27 H 0.079 0.921 28 H 0.153 0.847 29 H 0.136 0.864 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.093 0.907 35 H 0.054 0.946 36 H 0.084 0.916 37 H 0.007 0.993 38 H 0.156 0.844 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.796 -8.098 -9.991 16.791 hybrid contribution 0.654 0.644 1.081 1.418 sum -10.142 -7.453 -8.910 15.421 Atomic orbital electron populations 1.23331 0.76575 1.05492 1.02212 1.86026 1.23414 1.26648 1.88941 1.19091 0.92298 0.84803 0.97529 1.20514 0.92111 0.98375 1.06875 1.20845 0.99835 0.91477 0.97833 1.19707 0.94035 0.94288 1.02253 1.21350 0.96473 0.93556 0.96794 0.90636 1.22646 0.95681 0.98644 0.97148 1.21204 0.96572 0.95010 0.83728 0.95575 1.22084 1.00448 0.97290 1.00314 1.44886 1.44718 1.43996 1.00882 1.19357 1.14396 1.14166 0.87888 0.90318 1.25568 1.01365 1.01073 0.98077 1.70072 1.39800 1.39699 1.10443 0.85193 0.78307 0.78492 0.77613 1.20321 1.22158 1.20632 1.21697 0.88560 0.89781 0.95215 1.21059 0.93409 0.98133 0.97603 1.21402 1.01015 0.91462 1.08187 0.91535 0.86252 0.92086 0.84662 0.86384 0.91374 0.88985 0.93913 0.94654 0.90672 0.94597 0.91621 0.99332 0.84393 0.82939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.34 -8.26 10.50 -92.40 -0.97 -9.23 16 3 C 0.11 3.01 6.69 22.51 0.15 3.16 16 4 C -0.16 -4.86 9.99 22.37 0.22 -4.64 16 5 C -0.08 -2.76 8.27 22.25 0.18 -2.57 16 6 C -0.10 -3.48 5.00 -19.85 -0.10 -3.58 16 7 C -0.06 -2.38 3.26 -10.15 -0.03 -2.41 16 8 H 0.08 2.84 7.96 -2.39 -0.02 2.82 16 9 C -0.10 -3.55 5.91 31.78 0.19 -3.36 16 10 C 0.14 5.78 3.74 45.34 0.17 5.95 16 11 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 12 C -0.14 -5.11 9.09 71.98 0.65 -4.46 16 13 N -0.62 -32.18 3.14 -668.17 -2.10 -34.28 16 14 C -0.23 -12.96 9.82 84.03 0.83 -12.14 16 15 H 0.08 4.28 7.74 -2.91 -0.02 4.26 16 16 C -0.07 -3.96 5.49 84.86 0.47 -3.50 16 17 N -0.95 -57.90 10.09 21.65 0.22 -57.68 16 18 Si 0.98 46.54 29.55 68.60 2.03 48.56 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 22 C 0.17 8.68 5.30 86.85 0.46 9.14 16 23 C -0.08 -2.43 9.68 22.25 0.22 -2.22 16 24 C -0.20 -5.16 9.04 22.36 0.20 -4.95 16 25 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16 26 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.06 0.83 7.66 -2.39 -0.02 0.81 16 28 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 29 H 0.12 4.16 7.01 -2.91 -0.02 4.14 16 30 H 0.07 2.25 6.97 -2.39 -0.02 2.23 16 31 H 0.09 2.60 7.83 -2.39 -0.02 2.58 16 32 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.03 1.34 7.93 -2.39 -0.02 1.32 16 34 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.24 14.57 8.31 -92.70 -0.77 13.80 16 36 H 0.07 3.83 5.88 -2.39 -0.01 3.81 16 37 H -0.01 -0.61 6.85 -2.38 -0.02 -0.63 16 38 H 0.14 3.45 7.98 -2.91 -0.02 3.43 16 39 H 0.15 2.86 6.30 -2.91 -0.02 2.84 16 Total: -1.00 -67.70 312.38 4.92 -62.79 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 1.02 Total: 14.03 kcal Atomic # 6 Polarization: -28.90 SS G_CDS: 4.72 Total: -24.18 kcal Atomic # 7 Polarization: -90.07 SS G_CDS: -1.88 Total: -91.96 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.97 Total: -9.23 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.56 kcal Total: -67.70 4.92 -62.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076390306.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.110 kcal (2) G-P(sol) polarization free energy of solvation -67.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds