Wall clock time and date at job start Mon Mar 30 2020 06:10:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42902 * 1
3 3 C 1.35898 * 116.99694 * 2 1
4 4 C 1.38735 * 120.05254 * 179.97438 * 3 2 1
5 5 C 1.38144 * 119.94607 * 179.97438 * 4 3 2
6 6 C 1.38266 * 120.05233 * 0.02562 * 5 4 3
7 7 C 1.50708 * 119.94156 * 179.97438 * 6 5 4
8 8 H 1.08999 * 110.88461 * 180.70052 * 7 6 5
9 9 C 1.55159 * 111.00405 * 56.82090 * 7 6 5
10 10 C 1.54317 * 102.93714 * 206.42459 * 9 7 6
11 11 H 1.09001 * 109.87953 * 141.61205 * 10 9 7
12 12 C 1.53003 * 109.88132 * 262.76933 * 10 9 7
13 13 N 1.47012 * 107.27815 * 22.19229 * 10 9 7
14 14 C 1.36945 * 125.65322 * 181.00345 * 13 10 9
15 15 H 1.07997 * 119.99529 * 0.02562 * 14 13 10
16 16 C 1.38804 * 120.00064 * 180.02562 * 14 13 10
17 17 N 1.31618 * 120.00168 * 359.97438 * 16 14 13
18 18 Si 1.86800 * 119.99980 * 180.02562 * 16 14 13
19 19 H 1.48497 * 109.47300 * 59.99446 * 18 16 14
20 20 H 1.48499 * 109.47168 * 179.97438 * 18 16 14
21 21 H 1.48504 * 109.46800 * 299.99584 * 18 16 14
22 22 C 1.47473 * 108.72226 * 1.02421 * 13 10 9
23 23 C 1.38269 * 120.11595 * 359.95530 * 6 5 4
24 24 C 1.38142 * 120.04935 * 0.04230 * 23 6 5
25 25 H 1.08998 * 109.47042 * 60.00021 * 1 2 3
26 26 H 1.08999 * 109.47436 * 180.02562 * 1 2 3
27 27 H 1.08999 * 109.47292 * 300.00273 * 1 2 3
28 28 H 1.08002 * 120.02704 * 359.70561 * 4 3 2
29 29 H 1.08001 * 119.97447 * 179.97438 * 5 4 3
30 30 H 1.09002 * 110.71469 * 324.78600 * 9 7 6
31 31 H 1.08998 * 110.71905 * 88.05811 * 9 7 6
32 32 H 1.09006 * 109.46815 * 60.00870 * 12 10 9
33 33 H 1.09002 * 109.47136 * 180.02562 * 12 10 9
34 34 H 1.09001 * 109.47654 * 300.00947 * 12 10 9
35 35 H 0.97008 * 120.00270 * 179.97438 * 17 16 14
36 36 H 1.08995 * 110.40449 * 217.08374 * 22 13 10
37 37 H 1.09004 * 110.34643 * 94.74305 * 22 13 10
38 38 H 1.07992 * 119.97577 * 180.02562 * 23 6 5
39 39 H 1.08005 * 120.02748 * 179.97438 * 24 23 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0459 1.2109 0.0000
4 6 3.4313 1.2848 0.0005
5 6 4.0561 2.5169 0.0000
6 6 3.3019 3.6758 -0.0005
7 6 3.9861 5.0186 -0.0005
8 1 3.2552 5.8271 0.0115
9 6 4.9454 5.1539 -1.2125
10 6 5.9933 6.1702 -0.7119
11 1 6.9838 5.8872 -1.0683
12 6 5.6384 7.5722 -1.2113
13 7 5.9632 6.1403 0.7576
14 6 6.7316 6.9124 1.5875
15 1 7.4343 7.6188 1.1708
16 6 6.6074 6.7871 2.9643
17 7 5.7507 5.9266 3.4722
18 14 7.6550 7.8408 4.0964
19 1 7.3718 9.2757 3.8397
20 1 7.3342 7.5186 5.5101
21 1 9.0916 7.5661 3.8394
22 6 4.9690 5.1408 1.1905
23 6 1.9210 3.6048 -0.0015
24 6 1.2916 2.3751 -0.0010
25 1 -0.3633 0.5138 -0.8900
26 1 -0.3634 -1.0276 0.0005
27 1 -0.3634 0.5139 0.8899
28 1 4.0208 0.3799 0.0058
29 1 5.1345 2.5750 0.0008
30 1 5.4147 4.1971 -1.4415
31 1 4.4156 5.5428 -2.0821
32 1 4.6553 7.8541 -0.8341
33 1 6.3826 8.2842 -0.8544
34 1 5.6245 7.5771 -2.3012
35 1 5.6641 5.8387 4.4344
36 1 4.4447 5.4874 2.0810
37 1 5.4531 4.1833 1.3827
38 1 1.3342 4.5114 -0.0023
39 1 0.2129 2.3201 -0.0013
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000076390306.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:10:22
Heat of formation + Delta-G solvation = -8.675297 kcal
Electronic energy + Delta-G solvation = -19575.595820 eV
Core-core repulsion = 16676.283482 eV
Total energy + Delta-G solvation = -2899.312339 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 261.147 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-41.14194 -39.75682 -37.98577 -34.67470 -33.01208 -32.01131 -30.98588 -29.59138
-28.03905 -26.75417 -25.71907 -23.63838 -23.16112 -21.19265 -20.61249 -19.09660
-18.70501 -17.27120 -16.83482 -16.57021 -16.53109 -15.71089 -15.56178 -14.72801
-14.59038 -14.51007 -14.21552 -13.84455 -13.78345 -13.63189 -13.15249 -13.10513
-12.86310 -12.70059 -12.61812 -12.50591 -12.15902 -11.95041 -11.74818 -11.60892
-11.34830 -11.27476 -11.17184 -10.69835 -9.88435 -8.96016 -8.80586 -7.71725
-5.15722 0.45339 0.51805 1.46686 1.49598 1.55885 2.43661 2.52142
2.83992 3.36938 3.63742 3.88410 3.98133 4.05222 4.15660 4.26044
4.35521 4.42632 4.44273 4.51986 4.53976 4.69577 4.72687 4.73682
4.79543 4.86028 4.99116 5.11841 5.13388 5.24180 5.31943 5.37903
5.47661 5.53577 5.58767 5.71206 5.86054 5.87364 5.92341 6.36154
6.51934 7.16085 7.85375 8.49665 9.29216
Molecular weight = 261.15amu
Principal moments of inertia in cm(-1)
A = 0.026748 B = 0.004950 C = 0.004449
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1046.569736 B = 5655.571897 C = 6291.591455
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.018 3.982
2 O -0.336 6.336
3 C 0.108 3.892
4 C -0.160 4.160
5 C -0.082 4.082
6 C -0.102 4.102
7 C -0.062 4.062
8 H 0.075 0.925
9 C -0.103 4.103
10 C 0.141 3.859
11 H 0.026 0.974
12 C -0.142 4.142
13 N -0.620 5.620
14 C -0.229 4.229
15 H 0.079 0.921
16 C -0.069 4.069
17 N -0.950 5.950
18 Si 0.975 3.025
19 H -0.277 1.277
20 H -0.295 1.295
21 H -0.280 1.280
22 C 0.173 3.827
23 C -0.084 4.084
24 C -0.202 4.202
25 H 0.066 0.934
26 H 0.119 0.881
27 H 0.060 0.940
28 H 0.135 0.865
29 H 0.118 0.882
30 H 0.068 0.932
31 H 0.092 0.908
32 H 0.042 0.958
33 H 0.034 0.966
34 H 0.074 0.926
35 H 0.244 0.756
36 H 0.066 0.934
37 H -0.011 1.011
38 H 0.138 0.862
39 H 0.153 0.847
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.924 -7.946 -10.200 16.927
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 O -0.250 6.250
3 C 0.063 3.937
4 C -0.179 4.179
5 C -0.100 4.100
6 C -0.103 4.103
7 C -0.082 4.082
8 H 0.094 0.906
9 C -0.141 4.141
10 C 0.035 3.965
11 H 0.044 0.956
12 C -0.201 4.201
13 N -0.345 5.345
14 C -0.358 4.358
15 H 0.097 0.903
16 C -0.261 4.261
17 N -0.600 5.600
18 Si 0.804 3.196
19 H -0.203 1.203
20 H -0.222 1.222
21 H -0.206 1.206
22 C 0.047 3.953
23 C -0.102 4.102
24 C -0.221 4.221
25 H 0.085 0.915
26 H 0.137 0.863
27 H 0.079 0.921
28 H 0.153 0.847
29 H 0.136 0.864
30 H 0.086 0.914
31 H 0.110 0.890
32 H 0.061 0.939
33 H 0.053 0.947
34 H 0.093 0.907
35 H 0.054 0.946
36 H 0.084 0.916
37 H 0.007 0.993
38 H 0.156 0.844
39 H 0.171 0.829
Dipole moment (debyes) X Y Z Total
from point charges -10.796 -8.098 -9.991 16.791
hybrid contribution 0.654 0.644 1.081 1.418
sum -10.142 -7.453 -8.910 15.421
Atomic orbital electron populations
1.23331 0.76575 1.05492 1.02212 1.86026 1.23414 1.26648 1.88941
1.19091 0.92298 0.84803 0.97529 1.20514 0.92111 0.98375 1.06875
1.20845 0.99835 0.91477 0.97833 1.19707 0.94035 0.94288 1.02253
1.21350 0.96473 0.93556 0.96794 0.90636 1.22646 0.95681 0.98644
0.97148 1.21204 0.96572 0.95010 0.83728 0.95575 1.22084 1.00448
0.97290 1.00314 1.44886 1.44718 1.43996 1.00882 1.19357 1.14396
1.14166 0.87888 0.90318 1.25568 1.01365 1.01073 0.98077 1.70072
1.39800 1.39699 1.10443 0.85193 0.78307 0.78492 0.77613 1.20321
1.22158 1.20632 1.21697 0.88560 0.89781 0.95215 1.21059 0.93409
0.98133 0.97603 1.21402 1.01015 0.91462 1.08187 0.91535 0.86252
0.92086 0.84662 0.86384 0.91374 0.88985 0.93913 0.94654 0.90672
0.94597 0.91621 0.99332 0.84393 0.82939
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.27 9.81 113.37 1.11 1.38 16
2 O -0.34 -8.26 10.50 -92.40 -0.97 -9.23 16
3 C 0.11 3.01 6.69 22.51 0.15 3.16 16
4 C -0.16 -4.86 9.99 22.37 0.22 -4.64 16
5 C -0.08 -2.76 8.27 22.25 0.18 -2.57 16
6 C -0.10 -3.48 5.00 -19.85 -0.10 -3.58 16
7 C -0.06 -2.38 3.26 -10.15 -0.03 -2.41 16
8 H 0.08 2.84 7.96 -2.39 -0.02 2.82 16
9 C -0.10 -3.55 5.91 31.78 0.19 -3.36 16
10 C 0.14 5.78 3.74 45.34 0.17 5.95 16
11 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16
12 C -0.14 -5.11 9.09 71.98 0.65 -4.46 16
13 N -0.62 -32.18 3.14 -668.17 -2.10 -34.28 16
14 C -0.23 -12.96 9.82 84.03 0.83 -12.14 16
15 H 0.08 4.28 7.74 -2.91 -0.02 4.26 16
16 C -0.07 -3.96 5.49 84.86 0.47 -3.50 16
17 N -0.95 -57.90 10.09 21.65 0.22 -57.68 16
18 Si 0.98 46.54 29.55 68.60 2.03 48.56 16
19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16
20 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16
21 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16
22 C 0.17 8.68 5.30 86.85 0.46 9.14 16
23 C -0.08 -2.43 9.68 22.25 0.22 -2.22 16
24 C -0.20 -5.16 9.04 22.36 0.20 -4.95 16
25 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16
26 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16
27 H 0.06 0.83 7.66 -2.39 -0.02 0.81 16
28 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16
29 H 0.12 4.16 7.01 -2.91 -0.02 4.14 16
30 H 0.07 2.25 6.97 -2.39 -0.02 2.23 16
31 H 0.09 2.60 7.83 -2.39 -0.02 2.58 16
32 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16
33 H 0.03 1.34 7.93 -2.39 -0.02 1.32 16
34 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16
35 H 0.24 14.57 8.31 -92.70 -0.77 13.80 16
36 H 0.07 3.83 5.88 -2.39 -0.01 3.81 16
37 H -0.01 -0.61 6.85 -2.38 -0.02 -0.63 16
38 H 0.14 3.45 7.98 -2.91 -0.02 3.43 16
39 H 0.15 2.86 6.30 -2.91 -0.02 2.84 16
Total: -1.00 -67.70 312.38 4.92 -62.79
By element:
Atomic # 1 Polarization: 13.00 SS G_CDS: 1.02 Total: 14.03 kcal
Atomic # 6 Polarization: -28.90 SS G_CDS: 4.72 Total: -24.18 kcal
Atomic # 7 Polarization: -90.07 SS G_CDS: -1.88 Total: -91.96 kcal
Atomic # 8 Polarization: -8.26 SS G_CDS: -0.97 Total: -9.23 kcal
Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.56 kcal
Total: -67.70 4.92 -62.79 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000076390306.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.110 kcal
(2) G-P(sol) polarization free energy of solvation -67.704 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.593 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.918 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.785 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.675 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds