Wall clock time and date at job start Mon Mar 30 2020 06:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35896 * 117.00260 * 2 1 4 4 C 1.38730 * 120.05676 * 179.97438 * 3 2 1 5 5 C 1.38146 * 119.94370 * 179.97438 * 4 3 2 6 6 C 1.38263 * 120.05686 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94585 * 180.02562 * 6 5 4 8 8 H 1.09004 * 110.91549 * 357.54439 * 7 6 5 9 9 C 1.55448 * 111.11612 * 233.55651 * 7 6 5 10 10 C 1.54321 * 102.96961 * 206.45980 * 9 7 6 11 11 H 1.08998 * 110.01151 * 262.70109 * 10 9 7 12 12 C 1.52998 * 109.88188 * 141.60904 * 10 9 7 13 13 N 1.47026 * 107.26791 * 22.19024 * 10 9 7 14 14 C 1.36941 * 125.64206 * 181.07813 * 13 10 9 15 15 H 1.07996 * 120.00459 * 359.97438 * 14 13 10 16 16 C 1.38815 * 119.99408 * 180.02562 * 14 13 10 17 17 N 1.31617 * 119.99985 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99927 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47294 * 89.99647 * 18 16 14 20 20 H 1.48497 * 109.47254 * 210.00512 * 18 16 14 21 21 H 1.48503 * 109.46897 * 330.00038 * 18 16 14 22 22 C 1.47419 * 108.70576 * 1.06162 * 13 10 9 23 23 C 1.38265 * 120.11301 * 0.27211 * 6 5 4 24 24 C 1.38148 * 120.05220 * 359.45883 * 23 6 5 25 25 H 1.09007 * 109.47172 * 300.00368 * 1 2 3 26 26 H 1.09003 * 109.47120 * 59.99695 * 1 2 3 27 27 H 1.08994 * 109.47809 * 180.02562 * 1 2 3 28 28 H 1.07999 * 120.02980 * 359.95326 * 4 3 2 29 29 H 1.08008 * 119.96859 * 180.02562 * 5 4 3 30 30 H 1.08998 * 110.70855 * 88.08784 * 9 7 6 31 31 H 1.08997 * 110.70436 * 324.83532 * 9 7 6 32 32 H 1.09004 * 109.47335 * 300.73532 * 12 10 9 33 33 H 1.08999 * 109.47333 * 60.73800 * 12 10 9 34 34 H 1.09006 * 109.47162 * 180.74093 * 12 10 9 35 35 H 0.97009 * 119.99534 * 180.02562 * 17 16 14 36 36 H 1.09002 * 110.36926 * 94.70918 * 22 13 10 37 37 H 1.08995 * 110.36556 * 216.92202 * 22 13 10 38 38 H 1.07997 * 119.97261 * 179.70274 * 23 6 5 39 39 H 1.08004 * 120.02568 * 180.27188 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2847 0.0005 5 6 4.0561 2.5168 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0028 8 1 5.0692 4.9034 0.0415 9 6 3.4724 5.9098 1.1625 10 6 3.7049 7.3404 0.6328 11 1 4.6421 7.7355 1.0246 12 6 2.5440 8.2451 1.0507 13 7 3.7714 7.2574 -0.8336 14 6 3.9881 8.3091 -1.6834 15 1 4.1272 9.3040 -1.2870 16 6 4.0279 8.0965 -3.0546 17 7 3.8568 6.8843 -3.5379 18 14 4.3242 9.5310 -4.2140 19 1 5.7825 9.6866 -4.4463 20 1 3.6418 9.2715 -5.5070 21 1 3.7836 10.7753 -3.6100 22 6 3.5666 5.8545 -1.2375 23 6 1.9212 3.6048 0.0030 24 6 1.2916 2.3751 -0.0021 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 4.0209 0.3798 0.0017 29 1 5.1347 2.5748 0.0000 30 1 4.0542 5.7343 2.0674 31 1 2.4123 5.7333 1.3442 32 1 1.6114 7.8484 0.6491 33 1 2.4848 8.2812 2.1385 34 1 2.7084 9.2502 0.6621 35 1 3.8850 6.7357 -4.4961 36 1 2.5179 5.6777 -1.4767 37 1 4.1964 5.6102 -2.0928 38 1 1.3344 4.5114 0.0066 39 1 0.2129 2.3202 -0.0029 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076390309.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:24 Heat of formation + Delta-G solvation = 7.687505 kcal Electronic energy + Delta-G solvation = -19603.992814 eV Core-core repulsion = 16705.390020 eV Total energy + Delta-G solvation = -2898.602794 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.98336 -38.29124 -36.63183 -32.74967 -31.57756 -30.77697 -29.14109 -28.46531 -26.92146 -24.99610 -23.89294 -22.62960 -21.55451 -19.42361 -19.25111 -17.99083 -16.67930 -16.19655 -15.65874 -15.05684 -15.04201 -14.28421 -13.98508 -13.61318 -13.29887 -12.91187 -12.81105 -12.58655 -12.14919 -11.93255 -11.81235 -11.67243 -11.48425 -11.09198 -10.90220 -10.78536 -10.71855 -10.61485 -10.08868 -10.00261 -9.71553 -9.62213 -9.52913 -8.71879 -8.59529 -7.70761 -6.79823 -5.60806 -3.02421 1.63524 1.73835 3.37248 3.41901 3.46902 3.48814 4.05657 4.51704 4.94811 5.08683 5.10785 5.16055 5.23005 5.39614 5.45773 5.57858 5.61544 5.70370 5.76519 5.82556 5.91879 5.97487 6.20731 6.24558 6.30234 6.39807 6.49306 6.55059 6.61509 6.68872 6.75598 6.90161 7.03818 7.08908 7.23623 7.56357 7.58732 7.68526 7.91242 8.40850 9.26584 9.87964 10.53344 11.42541 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.025232 B = 0.005023 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.435175 B = 5573.394404 C = 6058.781377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.323 6.323 3 C 0.106 3.894 4 C -0.151 4.151 5 C -0.082 4.082 6 C -0.079 4.079 7 C -0.081 4.081 8 H 0.076 0.924 9 C -0.116 4.116 10 C 0.152 3.848 11 H 0.033 0.967 12 C -0.154 4.154 13 N -0.599 5.599 14 C -0.218 4.218 15 H 0.077 0.923 16 C -0.012 4.012 17 N -0.922 5.922 18 Si 0.912 3.088 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.282 1.282 22 C 0.166 3.834 23 C -0.072 4.072 24 C -0.205 4.205 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.095 0.905 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.036 0.964 34 H 0.050 0.950 35 H 0.251 0.749 36 H 0.014 0.986 37 H 0.106 0.894 38 H 0.125 0.875 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.555 -10.427 8.881 14.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.237 6.237 3 C 0.062 3.938 4 C -0.170 4.170 5 C -0.100 4.100 6 C -0.080 4.080 7 C -0.101 4.101 8 H 0.094 0.906 9 C -0.153 4.153 10 C 0.045 3.955 11 H 0.050 0.950 12 C -0.213 4.213 13 N -0.323 5.323 14 C -0.346 4.346 15 H 0.095 0.905 16 C -0.207 4.207 17 N -0.571 5.571 18 Si 0.743 3.257 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.208 1.208 22 C 0.041 3.959 23 C -0.090 4.090 24 C -0.223 4.223 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.113 0.887 28 H 0.142 0.858 29 H 0.144 0.856 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.032 0.968 37 H 0.124 0.876 38 H 0.143 0.857 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.462 -10.553 8.636 14.348 hybrid contribution -0.274 0.910 -0.672 1.164 sum -4.736 -9.644 7.963 13.373 Atomic orbital electron populations 1.22980 0.78938 1.03366 1.01321 1.86016 1.20963 1.27414 1.89339 1.18954 0.92355 0.83831 0.98654 1.20318 0.91202 0.98377 1.07093 1.20892 0.99771 0.90967 0.98418 1.19793 0.93364 0.95020 0.99842 1.21703 0.98725 0.90595 0.99082 0.90582 1.22753 1.00394 0.95324 0.96878 1.20946 0.95452 0.92846 0.86234 0.94963 1.22226 0.99971 1.00880 0.98224 1.44587 1.83911 1.04583 0.99213 1.19052 1.40908 0.87600 0.87070 0.90537 1.24769 1.02494 0.96809 0.96661 1.69800 1.56913 1.18668 1.11676 0.86109 0.77747 0.81340 0.80548 1.21651 1.21738 1.20816 1.21975 0.98886 0.81540 0.93449 1.20851 0.94426 0.96799 0.96919 1.21162 0.99579 0.92415 1.09191 0.92907 0.92743 0.88694 0.85765 0.85557 0.92333 0.91772 0.93342 0.94468 0.93126 0.93788 0.96798 0.87633 0.85703 0.86007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.36 10.50 -19.41 -0.20 -4.57 16 3 C 0.11 1.59 6.69 -39.22 -0.26 1.32 16 4 C -0.15 -2.23 9.99 -39.43 -0.39 -2.62 16 5 C -0.08 -1.28 9.68 -39.61 -0.38 -1.66 16 6 C -0.08 -1.37 5.01 -104.60 -0.52 -1.89 16 7 C -0.08 -1.56 3.27 -89.47 -0.29 -1.85 16 8 H 0.08 1.45 7.96 -51.93 -0.41 1.03 16 9 C -0.12 -2.05 5.89 -24.74 -0.15 -2.20 16 10 C 0.15 3.16 3.73 -66.95 -0.25 2.91 16 11 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 12 C -0.15 -2.89 9.14 37.16 0.34 -2.55 16 13 N -0.60 -15.16 3.13 -162.58 -0.51 -15.66 16 14 C -0.22 -6.03 9.87 -15.06 -0.15 -6.18 16 15 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 16 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 17 N -0.92 -27.00 10.09 55.49 0.56 -26.44 16 18 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C 0.17 4.02 5.30 -2.53 -0.01 4.01 16 23 C -0.07 -1.19 8.28 -39.60 -0.33 -1.52 16 24 C -0.20 -3.03 9.04 -39.43 -0.36 -3.38 16 25 H 0.05 0.45 7.67 -51.92 -0.40 0.05 16 26 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.13 1.73 7.98 -52.48 -0.42 1.31 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.06 1.09 6.46 -51.93 -0.34 0.75 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 1.00 8.03 -51.93 -0.42 0.58 16 35 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.01 0.36 7.08 -51.93 -0.37 0.00 16 37 H 0.11 2.92 5.87 -51.93 -0.30 2.62 16 38 H 0.13 2.08 7.00 -52.49 -0.37 1.72 16 39 H 0.12 1.51 6.30 -52.48 -0.33 1.17 16 LS Contribution 312.68 15.07 4.71 4.71 Total: -1.00 -30.48 312.68 -8.16 -38.64 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -5.83 Total: 0.94 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -1.86 Total: -14.78 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.05 Total: -42.10 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: -0.20 Total: -4.57 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.48 -8.16 -38.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076390309.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.328 kcal (2) G-P(sol) polarization free energy of solvation -30.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds