Wall clock time and date at job start Mon Mar 30 2020 06:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35896 * 117.00260 * 2 1 4 4 C 1.38730 * 120.05676 * 179.97438 * 3 2 1 5 5 C 1.38146 * 119.94370 * 179.97438 * 4 3 2 6 6 C 1.38263 * 120.05686 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94585 * 180.02562 * 6 5 4 8 8 H 1.09004 * 110.91549 * 357.54439 * 7 6 5 9 9 C 1.55448 * 111.11612 * 233.55651 * 7 6 5 10 10 C 1.54321 * 102.96961 * 206.45980 * 9 7 6 11 11 H 1.08998 * 110.01151 * 262.70109 * 10 9 7 12 12 C 1.52998 * 109.88188 * 141.60904 * 10 9 7 13 13 N 1.47026 * 107.26791 * 22.19024 * 10 9 7 14 14 C 1.36941 * 125.64206 * 181.07813 * 13 10 9 15 15 H 1.07996 * 120.00459 * 359.97438 * 14 13 10 16 16 C 1.38815 * 119.99408 * 180.02562 * 14 13 10 17 17 N 1.31617 * 119.99985 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99927 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47294 * 89.99647 * 18 16 14 20 20 H 1.48497 * 109.47254 * 210.00512 * 18 16 14 21 21 H 1.48503 * 109.46897 * 330.00038 * 18 16 14 22 22 C 1.47419 * 108.70576 * 1.06162 * 13 10 9 23 23 C 1.38265 * 120.11301 * 0.27211 * 6 5 4 24 24 C 1.38148 * 120.05220 * 359.45883 * 23 6 5 25 25 H 1.09007 * 109.47172 * 300.00368 * 1 2 3 26 26 H 1.09003 * 109.47120 * 59.99695 * 1 2 3 27 27 H 1.08994 * 109.47809 * 180.02562 * 1 2 3 28 28 H 1.07999 * 120.02980 * 359.95326 * 4 3 2 29 29 H 1.08008 * 119.96859 * 180.02562 * 5 4 3 30 30 H 1.08998 * 110.70855 * 88.08784 * 9 7 6 31 31 H 1.08997 * 110.70436 * 324.83532 * 9 7 6 32 32 H 1.09004 * 109.47335 * 300.73532 * 12 10 9 33 33 H 1.08999 * 109.47333 * 60.73800 * 12 10 9 34 34 H 1.09006 * 109.47162 * 180.74093 * 12 10 9 35 35 H 0.97009 * 119.99534 * 180.02562 * 17 16 14 36 36 H 1.09002 * 110.36926 * 94.70918 * 22 13 10 37 37 H 1.08995 * 110.36556 * 216.92202 * 22 13 10 38 38 H 1.07997 * 119.97261 * 179.70274 * 23 6 5 39 39 H 1.08004 * 120.02568 * 180.27188 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2847 0.0005 5 6 4.0561 2.5168 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0028 8 1 5.0692 4.9034 0.0415 9 6 3.4724 5.9098 1.1625 10 6 3.7049 7.3404 0.6328 11 1 4.6421 7.7355 1.0246 12 6 2.5440 8.2451 1.0507 13 7 3.7714 7.2574 -0.8336 14 6 3.9881 8.3091 -1.6834 15 1 4.1272 9.3040 -1.2870 16 6 4.0279 8.0965 -3.0546 17 7 3.8568 6.8843 -3.5379 18 14 4.3242 9.5310 -4.2140 19 1 5.7825 9.6866 -4.4463 20 1 3.6418 9.2715 -5.5070 21 1 3.7836 10.7753 -3.6100 22 6 3.5666 5.8545 -1.2375 23 6 1.9212 3.6048 0.0030 24 6 1.2916 2.3751 -0.0021 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 4.0209 0.3798 0.0017 29 1 5.1347 2.5748 0.0000 30 1 4.0542 5.7343 2.0674 31 1 2.4123 5.7333 1.3442 32 1 1.6114 7.8484 0.6491 33 1 2.4848 8.2812 2.1385 34 1 2.7084 9.2502 0.6621 35 1 3.8850 6.7357 -4.4961 36 1 2.5179 5.6777 -1.4767 37 1 4.1964 5.6102 -2.0928 38 1 1.3344 4.5114 0.0066 39 1 0.2129 2.3202 -0.0029 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076390309.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:23 Heat of formation + Delta-G solvation = -9.082418 kcal Electronic energy + Delta-G solvation = -19604.720013 eV Core-core repulsion = 16705.390020 eV Total energy + Delta-G solvation = -2899.329993 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.13874 -39.72235 -37.98278 -34.66706 -33.09514 -31.95309 -30.99048 -29.76184 -27.93627 -26.80832 -25.57239 -23.94122 -22.86959 -21.01753 -20.88067 -19.05402 -18.66755 -17.48287 -16.81090 -16.58008 -16.34338 -15.86307 -15.49286 -14.88460 -14.54056 -14.51804 -14.27022 -13.88613 -13.64464 -13.48905 -13.38289 -13.11350 -12.79557 -12.72603 -12.52040 -12.44596 -12.22216 -11.95077 -11.78652 -11.61455 -11.37058 -11.29130 -11.22426 -10.69354 -9.88538 -8.94971 -8.81544 -7.72289 -5.16269 0.45594 0.51727 1.46536 1.48137 1.56523 2.43217 2.51561 2.84057 3.36426 3.63421 3.87821 3.98515 4.02693 4.14362 4.27873 4.36209 4.40744 4.41900 4.51763 4.55915 4.63511 4.73859 4.74901 4.80184 4.82530 4.95703 5.11608 5.13959 5.16844 5.35495 5.37349 5.47206 5.53316 5.61431 5.68704 5.84975 5.87098 5.92031 6.35931 6.50467 7.15711 7.84925 8.49229 9.28698 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.025232 B = 0.005023 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.435175 B = 5573.394404 C = 6058.781377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.333 6.333 3 C 0.107 3.893 4 C -0.156 4.156 5 C -0.083 4.083 6 C -0.101 4.101 7 C -0.066 4.066 8 H 0.075 0.925 9 C -0.103 4.103 10 C 0.140 3.860 11 H 0.033 0.967 12 C -0.144 4.144 13 N -0.620 5.620 14 C -0.227 4.227 15 H 0.079 0.921 16 C -0.069 4.069 17 N -0.950 5.950 18 Si 0.975 3.025 19 H -0.286 1.286 20 H -0.296 1.296 21 H -0.271 1.271 22 C 0.174 3.826 23 C -0.083 4.083 24 C -0.206 4.206 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.122 0.878 28 H 0.145 0.855 29 H 0.141 0.859 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.037 0.963 33 H 0.074 0.926 34 H 0.035 0.965 35 H 0.244 0.756 36 H -0.013 1.013 37 H 0.066 0.934 38 H 0.116 0.884 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.001 -11.247 10.431 16.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.062 3.938 4 C -0.174 4.174 5 C -0.101 4.101 6 C -0.102 4.102 7 C -0.086 4.086 8 H 0.094 0.906 9 C -0.141 4.141 10 C 0.035 3.965 11 H 0.051 0.949 12 C -0.203 4.203 13 N -0.344 5.344 14 C -0.357 4.357 15 H 0.097 0.903 16 C -0.261 4.261 17 N -0.600 5.600 18 Si 0.804 3.196 19 H -0.213 1.213 20 H -0.223 1.223 21 H -0.196 1.196 22 C 0.049 3.951 23 C -0.101 4.101 24 C -0.224 4.224 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.140 0.860 28 H 0.163 0.837 29 H 0.159 0.841 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.005 0.995 37 H 0.084 0.916 38 H 0.134 0.866 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.916 -11.370 10.228 16.064 hybrid contribution -0.193 1.083 -1.117 1.568 sum -5.108 -10.287 9.111 14.660 Atomic orbital electron populations 1.23311 0.76781 1.05485 1.01998 1.86015 1.23202 1.26553 1.88954 1.19129 0.92686 0.84412 0.97584 1.20584 0.91634 0.98781 1.06422 1.21057 1.00551 0.90719 0.97812 1.19686 0.93806 0.94483 1.02232 1.21435 0.98826 0.91324 0.96967 0.90641 1.22710 1.01456 0.92694 0.97213 1.21236 0.96184 0.95316 0.83812 0.94896 1.22101 0.98407 0.99268 1.00544 1.44886 1.83820 1.04514 1.01214 1.19398 1.39925 0.88517 0.87830 0.90276 1.25569 1.03170 0.99159 0.98228 1.70081 1.58281 1.20439 1.11234 0.85118 0.77460 0.78886 0.78155 1.21311 1.22301 1.19592 1.21653 0.96399 0.82344 0.94701 1.20859 0.94265 0.97319 0.97643 1.21351 1.00830 0.91707 1.08551 0.91787 0.92451 0.86009 0.83743 0.84103 0.89293 0.90912 0.94399 0.90687 0.94608 0.94611 0.99481 0.91630 0.86604 0.83792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.33 -8.18 10.50 -92.38 -0.97 -9.14 16 3 C 0.11 2.98 6.69 22.51 0.15 3.13 16 4 C -0.16 -4.30 9.99 22.37 0.22 -4.08 16 5 C -0.08 -2.49 9.68 22.25 0.22 -2.27 16 6 C -0.10 -3.45 5.01 -19.85 -0.10 -3.55 16 7 C -0.07 -2.53 3.27 -10.05 -0.03 -2.56 16 8 H 0.08 2.86 7.96 -2.38 -0.02 2.84 16 9 C -0.10 -3.50 5.89 31.88 0.19 -3.32 16 10 C 0.14 5.73 3.73 45.34 0.17 5.89 16 11 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 12 C -0.14 -5.25 9.14 71.98 0.66 -4.59 16 13 N -0.62 -32.01 3.13 -668.28 -2.09 -34.10 16 14 C -0.23 -12.84 9.87 84.03 0.83 -12.01 16 15 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 16 C -0.07 -3.98 5.49 84.86 0.47 -3.51 16 17 N -0.95 -57.83 10.09 21.65 0.22 -57.61 16 18 Si 0.97 46.46 29.55 68.60 2.03 48.48 16 19 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 20 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 22 C 0.17 8.74 5.30 86.85 0.46 9.20 16 23 C -0.08 -2.70 8.28 22.25 0.18 -2.52 16 24 C -0.21 -5.78 9.04 22.37 0.20 -5.58 16 25 H 0.06 0.90 7.67 -2.38 -0.02 0.88 16 26 H 0.06 0.90 7.66 -2.39 -0.02 0.88 16 27 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 29 H 0.14 3.67 7.98 -2.91 -0.02 3.64 16 30 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.07 2.35 6.46 -2.39 -0.02 2.34 16 32 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.03 1.38 8.03 -2.38 -0.02 1.36 16 35 H 0.24 14.52 8.31 -92.70 -0.77 13.75 16 36 H -0.01 -0.69 7.08 -2.39 -0.02 -0.71 16 37 H 0.07 3.82 5.87 -2.39 -0.01 3.81 16 38 H 0.12 3.91 7.00 -2.91 -0.02 3.89 16 39 H 0.14 3.27 6.30 -2.91 -0.02 3.25 16 Total: -1.00 -67.31 312.68 4.94 -62.37 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 1.02 Total: 14.36 kcal Atomic # 6 Polarization: -29.08 SS G_CDS: 4.73 Total: -24.35 kcal Atomic # 7 Polarization: -89.85 SS G_CDS: -1.87 Total: -91.72 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: -0.97 Total: -9.14 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.48 kcal Total: -67.31 4.94 -62.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076390309.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.287 kcal (2) G-P(sol) polarization free energy of solvation -67.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds