Wall clock time and date at job start Mon Mar 30 2020 06:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00262 * 2 1 4 4 H 1.48500 * 109.47040 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46730 * 300.00336 * 3 2 1 6 6 H 1.48494 * 109.47189 * 60.00216 * 3 2 1 7 7 C 1.37880 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99740 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00031 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47296 * 180.02562 * 9 7 2 11 11 N 1.40292 * 126.08958 * 269.68859 * 10 9 7 12 12 C 1.31080 * 108.26885 * 179.82428 * 11 10 9 13 13 C 1.50698 * 125.96016 * 180.10186 * 12 11 10 14 14 C 1.52993 * 117.49975 * 357.53858 * 13 12 11 15 15 C 1.53000 * 117.50092 * 288.91298 * 13 12 11 16 16 C 1.39294 * 108.07398 * 0.38519 * 12 11 10 17 17 C 1.34320 * 126.09151 * 89.99958 * 10 9 7 18 18 C 1.50826 * 128.03347 * 0.13394 * 17 10 9 19 19 C 1.53369 * 108.38430 * 163.41122 * 18 17 10 20 20 C 1.53107 * 109.50880 * 49.91992 * 19 18 17 21 21 C 1.50839 * 127.89398 * 179.90158 * 16 12 11 22 22 H 1.09001 * 109.68297 * 283.11901 * 21 16 12 23 23 N 1.46896 * 109.68785 * 43.63693 * 21 16 12 24 24 H 0.97000 * 119.99535 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47226 * 59.99991 * 9 7 2 26 26 H 1.09003 * 109.46882 * 300.00354 * 9 7 2 27 27 H 1.09001 * 115.54384 * 143.24367 * 13 12 11 28 28 H 1.08994 * 117.50268 * 359.97438 * 14 13 12 29 29 H 1.09004 * 117.50040 * 145.02055 * 14 13 12 30 30 H 1.08998 * 117.49535 * 214.98133 * 15 13 12 31 31 H 1.08999 * 117.49884 * 359.97438 * 15 13 12 32 32 H 1.09001 * 109.67995 * 283.14057 * 18 17 10 33 33 H 1.09002 * 109.68467 * 43.69600 * 18 17 10 34 34 H 1.09005 * 109.46352 * 289.90655 * 19 18 17 35 35 H 1.08999 * 109.45469 * 169.92811 * 19 18 17 36 36 H 1.09001 * 109.46614 * 169.70351 * 20 19 18 37 37 H 1.08998 * 109.46561 * 49.71677 * 20 19 18 38 38 H 1.00903 * 111.00257 * 169.50047 * 23 21 16 39 39 H 1.00898 * 111.00147 * 293.46091 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 7 2.7352 -4.2448 -1.1342 12 6 3.5507 -5.1895 -0.7331 13 6 4.3397 -6.1144 -1.6235 14 6 4.1384 -5.9826 -3.1344 15 6 3.5653 -7.1894 -2.3887 16 6 3.5556 -5.1934 0.6598 17 6 2.7171 -4.2141 1.0849 18 6 2.4469 -3.9023 2.5356 19 6 2.9182 -5.0914 3.3818 20 6 4.3462 -5.4707 2.9802 21 6 4.3349 -6.0986 1.5810 22 1 3.8593 -7.0785 1.6216 23 7 5.7123 -6.2373 1.0898 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5570 0.8897 27 1 5.3382 -6.3698 -1.2689 28 1 3.4349 -5.2272 -3.4844 29 1 5.0046 -6.1512 -3.7742 30 1 4.0546 -8.1520 -2.5378 31 1 2.4851 -7.2280 -2.2478 32 1 2.9935 -3.0052 2.8262 33 1 1.3785 -3.7463 2.6848 34 1 2.2561 -5.9411 3.2150 35 1 2.8983 -4.8170 4.4365 36 1 4.7468 -6.1876 3.6969 37 1 4.9707 -4.5774 2.9723 38 1 6.2960 -6.6946 1.7741 39 1 5.7343 -6.7292 0.2091 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082826691.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:09 Heat of formation + Delta-G solvation = 86.290067 kcal Electronic energy + Delta-G solvation = -19961.596756 eV Core-core repulsion = 17098.695176 eV Total energy + Delta-G solvation = -2862.901580 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.85608 -36.92576 -36.59660 -33.67596 -33.13553 -31.16479 -28.89851 -27.52669 -26.91735 -23.93348 -22.72374 -22.17732 -21.75634 -20.89426 -18.67582 -17.99016 -16.70675 -16.03560 -15.68358 -15.21067 -14.88744 -14.42154 -14.01531 -13.87380 -13.48038 -13.20382 -12.94016 -12.47244 -12.35717 -11.74756 -11.67473 -11.33085 -11.26726 -11.10146 -10.87756 -10.83462 -10.55875 -10.52292 -10.39679 -10.22663 -10.10756 -9.65598 -9.44494 -8.64119 -8.51328 -8.09963 -7.38048 -6.25338 -4.32371 2.79627 3.20840 3.26310 3.28742 3.35015 3.58356 4.25949 4.30810 4.71027 4.88979 5.00610 5.09138 5.11929 5.17925 5.22488 5.36567 5.51721 5.65042 5.69343 5.79103 5.82720 5.84888 6.02069 6.05963 6.14483 6.20503 6.27529 6.34254 6.45940 6.50649 6.55645 6.91431 7.03097 7.11905 7.38208 7.52292 7.66283 7.68887 7.89691 8.08866 8.69746 8.78007 9.34111 10.82358 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018065 B = 0.006701 C = 0.005526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.590517 B = 4177.741305 C = 5065.655442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.065 0.935 9 C 0.257 3.743 10 N -0.318 5.318 11 N -0.297 5.297 12 C 0.090 3.910 13 C -0.070 4.070 14 C -0.168 4.168 15 C -0.173 4.173 16 C -0.251 4.251 17 C 0.095 3.905 18 C -0.053 4.053 19 C -0.108 4.108 20 C -0.114 4.114 21 C 0.181 3.819 22 H 0.031 0.969 23 N -0.843 5.843 24 H 0.267 0.733 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.119 0.881 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.332 0.668 39 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.232 -13.533 3.920 15.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.572 4.572 8 H 0.083 0.917 9 C 0.139 3.861 10 N -0.097 5.097 11 N -0.121 5.121 12 C -0.073 4.073 13 C -0.090 4.090 14 C -0.206 4.206 15 C -0.211 4.211 16 C -0.263 4.263 17 C -0.038 4.038 18 C -0.091 4.091 19 C -0.147 4.147 20 C -0.152 4.152 21 C 0.069 3.931 22 H 0.048 0.952 23 N -0.375 5.375 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.137 0.863 28 H 0.121 0.879 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.144 0.856 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.422 -11.871 2.864 13.797 hybrid contribution 0.504 -0.283 0.678 0.891 sum 6.926 -12.154 3.542 14.430 Atomic orbital electron populations 1.69932 1.06048 1.27541 1.49542 1.24927 0.94958 0.99451 0.94452 0.86309 0.80129 0.82514 0.77824 1.19515 1.20619 1.20630 1.21349 0.93823 0.89593 1.52444 0.91687 1.19663 0.86219 0.80655 0.99535 1.49002 1.33369 1.25536 1.01744 1.77370 1.15248 1.10309 1.09143 1.20684 0.98036 0.96402 0.92131 1.20271 0.98257 0.98661 0.91800 1.22923 1.03304 1.00690 0.93644 1.22965 1.00304 0.93316 1.04520 1.19197 1.08683 1.05774 0.92663 1.20697 0.97432 0.94629 0.91049 1.20242 1.02078 0.98839 0.87978 1.21500 0.96397 0.97856 0.98907 1.21649 0.97209 1.01257 0.95068 1.19447 0.86906 0.94604 0.92137 0.95173 1.58846 1.10606 1.60250 1.07839 0.92332 0.93092 0.93166 0.86337 0.87868 0.88891 0.88846 0.88954 0.89658 0.90418 0.91883 0.91261 0.92477 0.90763 0.85565 0.84593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.44 13.29 55.43 0.74 -24.70 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.91 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.53 -15.02 9.39 -34.44 -0.32 -15.34 16 8 H 0.06 1.91 7.81 -52.49 -0.41 1.50 16 9 C 0.26 6.73 6.04 -5.20 -0.03 6.70 16 10 N -0.32 -7.65 3.58 -58.31 -0.21 -7.86 16 11 N -0.30 -7.01 12.15 33.60 0.41 -6.60 16 12 C 0.09 1.81 6.71 -82.52 -0.55 1.26 16 13 C -0.07 -1.08 5.60 -91.78 -0.51 -1.59 16 14 C -0.17 -2.43 10.14 -26.73 -0.27 -2.70 16 15 C -0.17 -2.28 10.23 -26.73 -0.27 -2.55 16 16 C -0.25 -4.77 5.60 -105.05 -0.59 -5.36 16 17 C 0.10 1.98 6.73 -82.33 -0.55 1.42 16 18 C -0.05 -0.90 5.90 -27.63 -0.16 -1.06 16 19 C -0.11 -1.42 5.90 -26.48 -0.16 -1.58 16 20 C -0.11 -1.50 5.40 -26.48 -0.14 -1.64 16 21 C 0.18 2.65 3.55 -68.61 -0.24 2.41 16 22 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 23 N -0.84 -10.91 9.13 -5.43 -0.05 -10.96 16 24 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.05 1.43 8.14 -51.93 -0.42 1.00 16 26 H 0.05 1.30 7.57 -51.93 -0.39 0.91 16 27 H 0.12 1.59 5.48 -51.93 -0.28 1.31 16 28 H 0.10 1.73 7.87 -51.93 -0.41 1.32 16 29 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.08 1.31 7.76 -51.93 -0.40 0.91 16 34 H 0.06 0.80 8.11 -51.93 -0.42 0.38 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 1.09 8.11 -51.93 -0.42 0.67 16 38 H 0.33 3.38 8.93 -39.29 -0.35 3.03 16 39 H 0.34 4.04 5.71 -39.29 -0.22 3.81 16 LS Contribution 316.44 15.07 4.77 4.77 Total: -1.00 -31.05 316.44 -9.11 -40.16 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -5.83 Total: 7.07 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -3.91 Total: -18.33 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: 0.89 Total: -50.12 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.05 -9.11 -40.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082826691.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.451 kcal (2) G-P(sol) polarization free energy of solvation -31.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds