Wall clock time and date at job start Mon Mar 30 2020 06:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00262 * 2 1 4 4 H 1.48500 * 109.47040 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46730 * 300.00336 * 3 2 1 6 6 H 1.48494 * 109.47189 * 60.00216 * 3 2 1 7 7 C 1.37880 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99740 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00031 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47296 * 180.02562 * 9 7 2 11 11 N 1.40292 * 126.08958 * 269.68859 * 10 9 7 12 12 C 1.31080 * 108.26885 * 179.82428 * 11 10 9 13 13 C 1.50698 * 125.96016 * 180.10186 * 12 11 10 14 14 C 1.52993 * 117.49975 * 357.53858 * 13 12 11 15 15 C 1.53000 * 117.50092 * 288.91298 * 13 12 11 16 16 C 1.39294 * 108.07398 * 0.38519 * 12 11 10 17 17 C 1.34320 * 126.09151 * 89.99958 * 10 9 7 18 18 C 1.50826 * 128.03347 * 0.13394 * 17 10 9 19 19 C 1.53369 * 108.38430 * 163.41122 * 18 17 10 20 20 C 1.53107 * 109.50880 * 49.91992 * 19 18 17 21 21 C 1.50839 * 127.89398 * 179.90158 * 16 12 11 22 22 H 1.09001 * 109.68297 * 283.11901 * 21 16 12 23 23 N 1.46896 * 109.68785 * 43.63693 * 21 16 12 24 24 H 0.97000 * 119.99535 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47226 * 59.99991 * 9 7 2 26 26 H 1.09003 * 109.46882 * 300.00354 * 9 7 2 27 27 H 1.09001 * 115.54384 * 143.24367 * 13 12 11 28 28 H 1.08994 * 117.50268 * 359.97438 * 14 13 12 29 29 H 1.09004 * 117.50040 * 145.02055 * 14 13 12 30 30 H 1.08998 * 117.49535 * 214.98133 * 15 13 12 31 31 H 1.08999 * 117.49884 * 359.97438 * 15 13 12 32 32 H 1.09001 * 109.67995 * 283.14057 * 18 17 10 33 33 H 1.09002 * 109.68467 * 43.69600 * 18 17 10 34 34 H 1.09005 * 109.46352 * 289.90655 * 19 18 17 35 35 H 1.08999 * 109.45469 * 169.92811 * 19 18 17 36 36 H 1.09001 * 109.46614 * 169.70351 * 20 19 18 37 37 H 1.08998 * 109.46561 * 49.71677 * 20 19 18 38 38 H 1.00903 * 111.00257 * 169.50047 * 23 21 16 39 39 H 1.00898 * 111.00147 * 293.46091 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 7 2.7352 -4.2448 -1.1342 12 6 3.5507 -5.1895 -0.7331 13 6 4.3397 -6.1144 -1.6235 14 6 4.1384 -5.9826 -3.1344 15 6 3.5653 -7.1894 -2.3887 16 6 3.5556 -5.1934 0.6598 17 6 2.7171 -4.2141 1.0849 18 6 2.4469 -3.9023 2.5356 19 6 2.9182 -5.0914 3.3818 20 6 4.3462 -5.4707 2.9802 21 6 4.3349 -6.0986 1.5810 22 1 3.8593 -7.0785 1.6216 23 7 5.7123 -6.2373 1.0898 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5570 0.8897 27 1 5.3382 -6.3698 -1.2689 28 1 3.4349 -5.2272 -3.4844 29 1 5.0046 -6.1512 -3.7742 30 1 4.0546 -8.1520 -2.5378 31 1 2.4851 -7.2280 -2.2478 32 1 2.9935 -3.0052 2.8262 33 1 1.3785 -3.7463 2.6848 34 1 2.2561 -5.9411 3.2150 35 1 2.8983 -4.8170 4.4365 36 1 4.7468 -6.1876 3.6969 37 1 4.9707 -4.5774 2.9723 38 1 6.2960 -6.6946 1.7741 39 1 5.7343 -6.7292 0.2091 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082826691.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:09 Heat of formation + Delta-G solvation = 66.029460 kcal Electronic energy + Delta-G solvation = -19962.475322 eV Core-core repulsion = 17098.695176 eV Total energy + Delta-G solvation = -2863.780146 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.40454 -38.13056 -37.87885 -35.60133 -34.49611 -32.93313 -30.34873 -29.08040 -28.48408 -25.74207 -24.18410 -23.30947 -22.98207 -22.35248 -20.11384 -19.40404 -18.86272 -17.58901 -16.87289 -16.63555 -16.36719 -15.87255 -15.48813 -15.28513 -14.77621 -14.57674 -14.32347 -14.16076 -13.88218 -13.53830 -13.07610 -12.99194 -12.79972 -12.57479 -12.38440 -12.36130 -12.08500 -11.89435 -11.67795 -11.62926 -11.49467 -11.37779 -10.86089 -10.78363 -9.79219 -9.56319 -8.94237 -8.38323 -6.56898 1.15045 1.32070 1.33710 1.46937 1.82309 1.89627 2.30221 2.90443 3.06348 3.61680 3.65287 3.74945 3.92955 4.01306 4.06189 4.18027 4.28890 4.44518 4.45465 4.60530 4.61534 4.69694 4.78616 4.81076 4.85658 4.96132 5.02230 5.06313 5.15848 5.18532 5.30777 5.39374 5.46684 5.47275 5.57338 5.75718 5.98930 6.27596 6.43044 6.58980 6.81474 7.09232 7.14789 8.67947 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018065 B = 0.006701 C = 0.005526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.590517 B = 4177.741305 C = 5065.655442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.022 3.978 3 Si 0.973 3.027 4 H -0.275 1.275 5 H -0.272 1.272 6 H -0.263 1.263 7 C -0.553 4.553 8 H 0.045 0.955 9 C 0.277 3.723 10 N -0.351 5.351 11 N -0.350 5.350 12 C 0.090 3.910 13 C -0.087 4.087 14 C -0.174 4.174 15 C -0.147 4.147 16 C -0.251 4.251 17 C 0.074 3.926 18 C -0.055 4.055 19 C -0.099 4.099 20 C -0.110 4.110 21 C 0.183 3.817 22 H 0.047 0.953 23 N -0.850 5.850 24 H 0.274 0.726 25 H 0.017 0.983 26 H 0.044 0.956 27 H 0.146 0.854 28 H 0.068 0.932 29 H 0.125 0.875 30 H 0.136 0.864 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.056 0.944 38 H 0.352 0.648 39 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.352 -15.197 5.106 18.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.179 4.179 3 Si 0.796 3.204 4 H -0.200 1.200 5 H -0.197 1.197 6 H -0.187 1.187 7 C -0.591 4.591 8 H 0.063 0.937 9 C 0.157 3.843 10 N -0.130 5.130 11 N -0.173 5.173 12 C -0.074 4.074 13 C -0.107 4.107 14 C -0.211 4.211 15 C -0.185 4.185 16 C -0.263 4.263 17 C -0.057 4.057 18 C -0.094 4.094 19 C -0.137 4.137 20 C -0.148 4.148 21 C 0.071 3.929 22 H 0.064 0.936 23 N -0.385 5.385 24 H 0.084 0.916 25 H 0.035 0.965 26 H 0.062 0.938 27 H 0.163 0.837 28 H 0.087 0.913 29 H 0.143 0.857 30 H 0.154 0.846 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.075 0.925 38 H 0.167 0.833 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.550 -13.562 4.070 16.540 hybrid contribution -0.145 0.158 0.263 0.339 sum 8.405 -13.404 4.333 16.403 Atomic orbital electron populations 1.70012 1.07331 1.28892 1.49452 1.25772 0.95853 1.02762 0.93483 0.85288 0.78289 0.78115 0.78676 1.19993 1.19731 1.18747 1.21423 0.92920 0.91128 1.53623 0.93685 1.19112 0.86336 0.81400 0.97428 1.48786 1.34742 1.26302 1.03130 1.77297 1.17532 1.12404 1.10078 1.21549 0.96632 0.95479 0.93719 1.20522 0.99241 0.99223 0.91680 1.22957 1.03971 1.00758 0.93430 1.23033 0.99337 0.94365 1.01769 1.19841 1.08000 1.05429 0.93005 1.21502 0.97538 0.94792 0.91856 1.20405 1.01708 1.00539 0.86739 1.21509 0.96601 0.96091 0.99534 1.21648 0.96746 1.01381 0.95004 1.19502 0.87394 0.94205 0.91769 0.93585 1.58716 1.09815 1.61126 1.08847 0.91635 0.96455 0.93839 0.83681 0.91297 0.85713 0.84577 0.90875 0.90772 0.91123 0.91074 0.88348 0.88634 0.92510 0.83335 0.83919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.75 13.29 21.45 0.28 -53.46 16 2 C 0.02 1.26 5.46 84.66 0.46 1.73 16 3 Si 0.97 44.71 29.54 68.60 2.03 46.74 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.55 -32.76 9.39 25.60 0.24 -32.52 16 8 H 0.04 2.78 7.81 -2.91 -0.02 2.76 16 9 C 0.28 15.58 6.04 85.63 0.52 16.09 16 10 N -0.35 -17.94 3.58 -338.39 -1.21 -19.15 16 11 N -0.35 -17.43 12.15 -47.62 -0.58 -18.01 16 12 C 0.09 3.64 6.71 42.92 0.29 3.92 16 13 C -0.09 -2.55 5.60 -11.54 -0.06 -2.62 16 14 C -0.17 -4.84 10.14 30.59 0.31 -4.53 16 15 C -0.15 -3.56 10.23 30.59 0.31 -3.24 16 16 C -0.25 -9.48 5.60 -20.14 -0.11 -9.60 16 17 C 0.07 3.19 6.73 41.64 0.28 3.47 16 18 C -0.06 -1.92 5.90 30.01 0.18 -1.74 16 19 C -0.10 -2.39 5.90 30.75 0.18 -2.21 16 20 C -0.11 -2.55 5.40 30.75 0.17 -2.39 16 21 C 0.18 4.89 3.55 44.34 0.16 5.05 16 22 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 23 N -0.85 -19.27 9.13 -171.10 -1.56 -20.83 16 24 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 25 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.04 2.44 7.57 -2.39 -0.02 2.42 16 27 H 0.15 3.46 5.48 -2.39 -0.01 3.44 16 28 H 0.07 2.41 7.87 -2.39 -0.02 2.39 16 29 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.14 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.07 2.49 7.76 -2.39 -0.02 2.48 16 34 H 0.07 1.63 8.11 -2.38 -0.02 1.61 16 35 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.06 1.54 8.11 -2.39 -0.02 1.52 16 38 H 0.35 5.74 8.93 -89.69 -0.80 4.94 16 39 H 0.34 7.01 5.71 -89.70 -0.51 6.50 16 Total: -1.00 -71.83 316.44 1.63 -70.20 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: -0.25 Total: 23.09 kcal Atomic # 6 Polarization: -31.49 SS G_CDS: 2.92 Total: -28.57 kcal Atomic # 7 Polarization: -108.39 SS G_CDS: -3.07 Total: -111.45 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -71.83 1.63 -70.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082826691.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.228 kcal (2) G-P(sol) polarization free energy of solvation -71.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds