Wall clock time and date at job start Mon Mar 30 2020 06:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.20757 * 119.99727 * 2 1 4 4 C 1.50701 * 120.00132 * 180.02562 * 2 1 3 5 5 C 1.52994 * 109.46921 * 179.97438 * 4 2 1 6 6 H 1.08998 * 109.47392 * 305.96742 * 5 4 2 7 7 C 1.52997 * 109.47007 * 185.96924 * 5 4 2 8 8 N 1.46505 * 109.47338 * 65.96962 * 5 4 2 9 9 C 1.46500 * 119.99519 * 55.38948 * 8 5 4 10 10 C 1.50699 * 109.47178 * 269.99993 * 9 8 5 11 11 H 1.08009 * 120.00098 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00064 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99899 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99899 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.46852 * 90.00968 * 14 12 10 16 16 H 1.48502 * 109.47290 * 210.00232 * 14 12 10 17 17 H 1.48492 * 109.47550 * 330.00867 * 14 12 10 18 18 C 1.39670 * 120.00295 * 235.39135 * 8 5 4 19 19 C 1.38911 * 120.07637 * 174.21937 * 18 8 5 20 20 C 1.38106 * 119.92414 * 180.02562 * 19 18 8 21 21 C 1.38282 * 120.07277 * 0.02562 * 20 19 18 22 22 C 1.38278 * 120.15496 * 0.27021 * 21 20 19 23 23 C 1.38111 * 120.07190 * 359.45343 * 22 21 20 24 24 H 1.09005 * 109.46551 * 239.99808 * 1 2 3 25 25 H 1.08997 * 109.47284 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46828 * 120.00603 * 1 2 3 27 27 H 1.08999 * 109.47191 * 59.99756 * 4 2 1 28 28 H 1.09003 * 109.46992 * 299.99743 * 4 2 1 29 29 H 1.09001 * 109.47190 * 65.39851 * 7 5 4 30 30 H 1.09001 * 109.47469 * 185.39912 * 7 5 4 31 31 H 1.09003 * 109.47171 * 305.39783 * 7 5 4 32 32 H 1.09000 * 109.47684 * 30.00453 * 9 8 5 33 33 H 1.09006 * 109.47087 * 150.00395 * 9 8 5 34 34 H 0.96997 * 120.00128 * 179.97438 * 13 12 10 35 35 H 1.08000 * 120.03888 * 0.02562 * 19 18 8 36 36 H 1.07995 * 119.96178 * 180.02562 * 20 19 18 37 37 H 1.08003 * 119.92120 * 179.97438 * 21 20 19 38 38 H 1.07997 * 119.96708 * 179.69885 * 22 21 20 39 39 H 1.07995 * 120.03728 * 180.27466 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2606 -1.3051 -0.0006 5 6 3.7648 -1.0254 -0.0011 6 1 4.0114 -0.3654 -0.8328 7 6 4.5283 -2.3427 -0.1517 8 7 4.1426 -0.3835 1.2604 9 6 3.8202 -1.0284 2.5357 10 6 2.4620 -0.5703 3.0011 11 1 1.8954 0.1308 2.4061 12 6 1.9427 -1.0462 4.1864 13 7 0.7572 -0.6468 4.5922 14 14 2.9223 -2.2592 5.2150 15 1 3.7770 -1.5165 6.1758 16 1 1.9899 -3.1415 5.9616 17 1 3.7789 -3.0840 4.3256 18 6 4.8101 0.8433 1.2473 19 6 5.0627 1.5113 2.4388 20 6 5.7225 2.7244 2.4221 21 6 6.1311 3.2745 1.2210 22 6 5.8760 2.6152 0.0325 23 6 5.2217 1.3990 0.0425 24 1 -0.3632 -0.5139 0.8900 25 1 -0.3634 1.0276 -0.0005 26 1 -0.3633 -0.5139 -0.8899 27 1 1.9973 -1.8763 -0.8908 28 1 1.9973 -1.8770 0.8892 29 1 4.3209 -2.7729 -1.1315 30 1 5.5979 -2.1557 -0.0561 31 1 4.2102 -3.0379 0.6252 32 1 3.8134 -2.1104 2.4043 33 1 4.5695 -0.7574 3.2796 34 1 0.3916 -0.9818 5.4258 35 1 4.7434 1.0824 3.3772 36 1 5.9195 3.2440 3.3481 37 1 6.6466 4.2235 1.2107 38 1 6.1922 3.0499 -0.9042 39 1 5.0266 0.8825 -0.8857 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084273451.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:35 Heat of formation + Delta-G solvation = -20.686563 kcal Electronic energy + Delta-G solvation = -20550.240189 eV Core-core repulsion = 17650.407003 eV Total energy + Delta-G solvation = -2899.833186 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.91971 -39.70692 -37.56617 -34.83955 -33.49039 -31.85769 -31.24640 -30.71130 -28.25959 -28.06622 -24.73006 -23.38956 -22.38029 -20.98934 -19.94032 -19.01762 -18.67851 -16.85699 -16.55952 -16.45979 -16.18589 -15.78145 -15.51949 -15.03461 -14.77332 -14.53380 -14.30828 -14.14606 -13.69625 -13.37093 -13.27206 -13.19201 -12.98311 -12.89800 -12.59900 -12.47395 -12.44071 -12.09448 -11.95626 -11.74582 -11.61745 -11.20066 -10.75281 -10.55985 -10.19423 -9.62249 -8.25056 -7.84216 -6.26713 0.74359 0.97815 1.33889 1.34986 1.37819 1.44569 2.34167 2.55782 3.08313 3.22854 3.36697 3.98614 4.08387 4.24662 4.29531 4.37305 4.46502 4.53682 4.61265 4.68573 4.73888 4.78956 4.83424 4.89967 4.92519 4.97692 5.01360 5.09145 5.20554 5.32879 5.37904 5.42959 5.55551 5.68542 5.79589 5.90662 6.21182 6.30873 6.72053 6.83685 6.91697 6.98381 7.37737 8.90635 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.014920 B = 0.009416 C = 0.007640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.203532 B = 2973.058345 C = 3664.055963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.359 3.641 3 O -0.491 6.491 4 C -0.179 4.179 5 C 0.151 3.849 6 H 0.088 0.912 7 C -0.154 4.154 8 N -0.606 5.606 9 C 0.230 3.770 10 C -0.519 4.519 11 H 0.045 0.955 12 C 0.019 3.981 13 N -0.941 5.941 14 Si 0.930 3.070 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.243 1.243 18 C 0.232 3.768 19 C -0.224 4.224 20 C -0.087 4.087 21 C -0.201 4.201 22 C -0.080 4.080 23 C -0.206 4.206 24 H 0.079 0.921 25 H 0.061 0.939 26 H 0.123 0.877 27 H 0.134 0.866 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.040 0.960 33 H 0.014 0.986 34 H 0.264 0.736 35 H 0.097 0.903 36 H 0.125 0.875 37 H 0.137 0.863 38 H 0.142 0.858 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.476 -2.756 -11.425 13.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.237 3.763 3 O -0.367 6.367 4 C -0.217 4.217 5 C 0.047 3.953 6 H 0.106 0.894 7 C -0.212 4.212 8 N -0.313 5.313 9 C 0.108 3.892 10 C -0.558 4.558 11 H 0.063 0.937 12 C -0.179 4.179 13 N -0.582 5.582 14 Si 0.755 3.245 15 H -0.205 1.205 16 H -0.209 1.209 17 H -0.166 1.166 18 C 0.128 3.872 19 C -0.247 4.247 20 C -0.106 4.106 21 C -0.221 4.221 22 C -0.099 4.099 23 C -0.228 4.228 24 H 0.097 0.903 25 H 0.080 0.920 26 H 0.141 0.859 27 H 0.152 0.848 28 H 0.116 0.884 29 H 0.112 0.888 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.032 0.968 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.143 0.857 37 H 0.154 0.846 38 H 0.159 0.841 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.562 -2.445 -11.290 13.285 hybrid contribution -0.435 -0.332 1.406 1.509 sum 6.127 -2.777 -9.884 11.956 Atomic orbital electron populations 1.22250 0.94119 1.03891 1.05069 1.24786 0.92532 0.90633 0.68362 1.90392 1.72592 1.36324 1.37375 1.22586 0.95762 0.97447 1.05863 1.20957 0.92902 0.94953 0.86479 0.89401 1.22135 0.99929 0.95967 1.03152 1.46669 1.59863 1.19138 1.05649 1.19286 0.93987 0.93374 0.82579 1.21733 1.02109 1.25843 1.06144 0.93685 1.25661 0.95643 0.98167 0.98464 1.70044 1.18808 1.46108 1.23214 0.85975 0.79082 0.79825 0.79636 1.20469 1.20942 1.16634 1.17991 0.89455 0.85894 0.93894 1.20825 1.08057 0.98776 0.97054 1.21046 0.96425 0.94149 0.98957 1.21013 1.06860 1.02102 0.92129 1.21114 0.96380 0.93667 0.98693 1.20739 1.06932 0.99328 0.95832 0.90270 0.91963 0.85909 0.84800 0.88392 0.88804 0.92664 0.92849 0.94244 0.96806 0.92735 0.88522 0.85692 0.84559 0.84071 0.85824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.23 10.26 71.24 0.73 -5.50 16 2 C 0.36 13.38 5.24 29.10 0.15 13.53 16 3 O -0.49 -22.08 14.87 -1.44 -0.02 -22.11 16 4 C -0.18 -5.62 4.63 29.85 0.14 -5.48 16 5 C 0.15 4.89 2.12 44.99 0.10 4.99 16 6 H 0.09 2.78 5.16 -2.39 -0.01 2.76 16 7 C -0.15 -3.92 9.16 71.98 0.66 -3.26 16 8 N -0.61 -24.85 1.93 -677.67 -1.31 -26.16 16 9 C 0.23 10.54 3.15 85.63 0.27 10.81 16 10 C -0.52 -27.96 8.13 25.60 0.21 -27.76 16 11 H 0.04 2.74 6.03 -2.91 -0.02 2.72 16 12 C 0.02 1.03 5.47 84.65 0.46 1.50 16 13 N -0.94 -56.31 13.96 21.45 0.30 -56.02 16 14 Si 0.93 42.17 27.47 68.60 1.88 44.05 16 15 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 16 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 17 H -0.24 -10.00 6.54 99.48 0.65 -9.35 16 18 C 0.23 9.80 5.66 38.21 0.22 10.02 16 19 C -0.22 -9.88 9.16 22.40 0.21 -9.68 16 20 C -0.09 -3.25 10.04 22.25 0.22 -3.03 16 21 C -0.20 -6.54 10.04 22.29 0.22 -6.31 16 22 C -0.08 -2.58 10.04 22.25 0.22 -2.35 16 23 C -0.21 -7.53 8.94 22.40 0.20 -7.33 16 24 H 0.08 2.83 8.14 -2.38 -0.02 2.81 16 25 H 0.06 2.07 8.12 -2.39 -0.02 2.05 16 26 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 27 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 28 H 0.10 3.59 6.51 -2.39 -0.02 3.57 16 29 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.05 1.44 7.05 -2.39 -0.02 1.43 16 32 H 0.04 1.71 5.84 -2.39 -0.01 1.69 16 33 H 0.01 0.67 5.88 -2.38 -0.01 0.65 16 34 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 35 H 0.10 4.70 6.26 -2.91 -0.02 4.68 16 36 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 37 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 38 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 39 H 0.12 4.08 5.83 -2.91 -0.02 4.06 16 Total: -1.00 -69.06 310.90 5.84 -63.21 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 0.98 Total: 26.87 kcal Atomic # 6 Polarization: -33.86 SS G_CDS: 4.01 Total: -29.86 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -1.01 Total: -82.18 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.02 Total: -22.11 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.88 Total: 44.05 kcal Total: -69.06 5.84 -63.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084273451.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.528 kcal (2) G-P(sol) polarization free energy of solvation -69.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds