Wall clock time and date at job start Mon Mar 30 2020 06:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20761 * 119.99862 * 2 1 4 4 C 1.50704 * 119.99872 * 180.02562 * 2 1 3 5 5 C 1.53004 * 109.46957 * 184.45368 * 4 2 1 6 6 H 1.09007 * 109.46612 * 53.87046 * 5 4 2 7 7 C 1.52996 * 109.47127 * 173.87285 * 5 4 2 8 8 N 1.46500 * 109.47267 * 293.87747 * 5 4 2 9 9 C 1.46502 * 119.99697 * 305.60982 * 8 5 4 10 10 C 1.50703 * 109.47127 * 272.12487 * 9 8 5 11 11 H 1.08000 * 119.99800 * 355.01468 * 10 9 8 12 12 C 1.37879 * 119.99918 * 175.01902 * 10 9 8 13 13 N 1.31512 * 119.99795 * 179.97438 * 12 10 9 14 14 Si 1.86795 * 119.99959 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47230 * 90.00343 * 14 12 10 16 16 H 1.48502 * 109.47236 * 210.00230 * 14 12 10 17 17 H 1.48497 * 109.47366 * 329.99803 * 14 12 10 18 18 C 1.39669 * 120.00282 * 125.61180 * 8 5 4 19 19 C 1.38910 * 120.07359 * 174.44529 * 18 8 5 20 20 C 1.38107 * 119.92630 * 179.72328 * 19 18 8 21 21 C 1.38289 * 120.07038 * 0.28277 * 20 19 18 22 22 C 1.38290 * 120.15178 * 359.96858 * 21 20 19 23 23 C 1.38099 * 120.07102 * 0.02562 * 22 21 20 24 24 H 1.09000 * 109.47196 * 239.99158 * 1 2 3 25 25 H 1.08998 * 109.47754 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47642 * 119.99904 * 1 2 3 27 27 H 1.09001 * 109.47217 * 64.45522 * 4 2 1 28 28 H 1.08992 * 109.47145 * 304.45190 * 4 2 1 29 29 H 1.09002 * 109.46867 * 304.27393 * 7 5 4 30 30 H 1.08997 * 109.46933 * 64.27303 * 7 5 4 31 31 H 1.08998 * 109.47301 * 184.27640 * 7 5 4 32 32 H 1.09004 * 109.46908 * 32.11825 * 9 8 5 33 33 H 1.08997 * 109.47166 * 152.12094 * 9 8 5 34 34 H 0.96997 * 120.00217 * 179.97438 * 13 12 10 35 35 H 1.08000 * 120.04032 * 0.02562 * 19 18 8 36 36 H 1.07995 * 119.96265 * 180.29523 * 20 19 18 37 37 H 1.08001 * 119.92214 * 179.97438 * 21 20 19 38 38 H 1.08000 * 119.95793 * 180.02562 * 22 21 20 39 39 H 1.08005 * 120.03084 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3052 -0.0006 5 6 3.7610 -1.0278 0.1116 6 1 3.9501 -0.3991 0.9817 7 6 4.5141 -2.3507 0.2647 8 7 4.2222 -0.3403 -1.0971 9 6 3.9678 -0.9265 -2.4154 10 6 5.0897 -1.8675 -2.7717 11 1 5.9488 -1.9536 -2.1229 12 6 5.0194 -2.6184 -3.9259 13 7 5.9987 -3.4392 -4.2371 14 14 3.5332 -2.4698 -5.0477 15 1 3.7757 -1.4032 -6.0520 16 1 3.3066 -3.7622 -5.7431 17 1 2.3356 -2.1259 -4.2398 18 6 4.9044 0.8740 -0.9926 19 6 5.4430 1.4696 -2.1260 20 6 6.1121 2.6731 -2.0201 21 6 6.2511 3.2823 -0.7864 22 6 5.7206 2.6895 0.3448 23 6 5.0504 1.4861 0.2458 24 1 -0.3633 -0.5140 0.8899 25 1 -0.3634 1.0276 0.0005 26 1 -0.3634 -0.5138 -0.8900 27 1 2.0584 -1.8410 -0.9280 28 1 1.9387 -1.9108 0.8465 29 1 4.1182 -2.8971 1.1207 30 1 4.3866 -2.9479 -0.6381 31 1 5.5739 -2.1495 0.4206 32 1 3.0264 -1.4755 -2.3934 33 1 3.9085 -0.1331 -3.1605 34 1 5.9491 -3.9677 -5.0489 35 1 5.3345 0.9945 -3.0898 36 1 6.5269 3.1391 -2.9016 37 1 6.7751 4.2233 -0.7062 38 1 5.8307 3.1682 1.3066 39 1 4.6360 1.0239 1.1296 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084273453.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:36 Heat of formation + Delta-G solvation = -18.705947 kcal Electronic energy + Delta-G solvation = -20310.633487 eV Core-core repulsion = 17410.886186 eV Total energy + Delta-G solvation = -2899.747300 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.96516 -39.77825 -37.64562 -34.84687 -33.53668 -31.87704 -31.28185 -30.72351 -28.33062 -28.12780 -24.72785 -23.44409 -22.36267 -21.05822 -19.98081 -18.98309 -18.75060 -16.94016 -16.59181 -16.56272 -16.12402 -15.92176 -15.55770 -15.04018 -14.75646 -14.51867 -14.36830 -14.32265 -13.62182 -13.41289 -13.27860 -13.19690 -13.07044 -12.74200 -12.71870 -12.63038 -12.43882 -12.04543 -11.95296 -11.76434 -11.67646 -11.19759 -10.77363 -10.60993 -10.25656 -9.63507 -8.28072 -7.85695 -6.30241 0.73212 0.96415 1.21169 1.32594 1.34938 1.43176 2.31987 2.53007 3.04977 3.21469 3.25230 3.89308 4.02233 4.20714 4.27269 4.35106 4.49219 4.50076 4.61050 4.67535 4.73354 4.77874 4.79734 4.81444 4.89818 4.96523 4.98142 5.06512 5.17346 5.30270 5.35959 5.49355 5.58179 5.67101 5.78655 5.89284 6.17640 6.28523 6.69038 6.77152 6.80842 6.96394 7.33494 8.88830 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.014090 B = 0.009220 C = 0.006892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.767999 B = 3036.244839 C = 4061.642910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.344 3.656 3 O -0.481 6.481 4 C -0.187 4.187 5 C 0.154 3.846 6 H 0.089 0.911 7 C -0.153 4.153 8 N -0.605 5.605 9 C 0.234 3.766 10 C -0.515 4.515 11 H 0.031 0.969 12 C 0.013 3.987 13 N -0.946 5.946 14 Si 0.936 3.064 15 H -0.275 1.275 16 H -0.281 1.281 17 H -0.240 1.240 18 C 0.229 3.771 19 C -0.227 4.227 20 C -0.086 4.086 21 C -0.200 4.200 22 C -0.081 4.081 23 C -0.202 4.202 24 H 0.119 0.881 25 H 0.073 0.927 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.142 0.858 29 H 0.087 0.913 30 H 0.052 0.948 31 H 0.028 0.972 32 H 0.039 0.961 33 H 0.013 0.987 34 H 0.265 0.735 35 H 0.098 0.902 36 H 0.128 0.872 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.063 6.502 10.389 16.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.221 3.779 3 O -0.356 6.356 4 C -0.225 4.225 5 C 0.051 3.949 6 H 0.107 0.893 7 C -0.211 4.211 8 N -0.312 5.312 9 C 0.111 3.889 10 C -0.554 4.554 11 H 0.050 0.950 12 C -0.185 4.185 13 N -0.586 5.586 14 Si 0.759 3.241 15 H -0.201 1.201 16 H -0.206 1.206 17 H -0.163 1.163 18 C 0.124 3.876 19 C -0.250 4.250 20 C -0.104 4.104 21 C -0.220 4.220 22 C -0.100 4.100 23 C -0.224 4.224 24 H 0.138 0.862 25 H 0.092 0.908 26 H 0.119 0.881 27 H 0.117 0.883 28 H 0.159 0.841 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.031 0.969 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.146 0.854 37 H 0.156 0.844 38 H 0.159 0.841 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.814 6.732 10.249 16.350 hybrid contribution 0.054 -0.558 -1.178 1.305 sum -10.761 6.175 9.071 15.369 Atomic orbital electron populations 1.22292 0.91857 1.04899 1.06158 1.25077 0.93364 0.89888 0.69525 1.90473 1.72863 1.35953 1.36350 1.22674 0.94816 0.98462 1.06529 1.20888 0.92816 0.93423 0.87812 0.89340 1.22130 0.99100 0.97372 1.02471 1.46607 1.59198 1.19585 1.05818 1.19259 0.95515 0.92415 0.81712 1.21590 1.04766 1.22243 1.06789 0.95042 1.25762 0.99049 0.94607 0.99035 1.70058 1.34523 1.27747 1.26312 0.85894 0.80866 0.77798 0.79516 1.20089 1.20635 1.16290 1.18028 0.89716 0.85802 0.94037 1.20849 1.06989 0.99443 0.97710 1.21055 0.96834 0.93917 0.98608 1.21029 1.06368 1.02294 0.92298 1.21118 0.95607 0.94067 0.99170 1.20699 1.07226 0.98916 0.95570 0.86242 0.90835 0.88131 0.88308 0.84054 0.89456 0.92918 0.95230 0.94281 0.96908 0.92583 0.88364 0.85425 0.84416 0.84123 0.86122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.26 10.26 71.24 0.73 -2.53 16 2 C 0.34 8.99 7.16 29.10 0.21 9.20 16 3 O -0.48 -16.80 14.47 -1.45 -0.02 -16.82 16 4 C -0.19 -4.77 4.99 29.85 0.15 -4.62 16 5 C 0.15 5.19 2.16 44.99 0.10 5.29 16 6 H 0.09 2.84 5.16 -2.38 -0.01 2.83 16 7 C -0.15 -5.30 8.76 71.98 0.63 -4.67 16 8 N -0.61 -25.45 1.88 -677.65 -1.27 -26.72 16 9 C 0.23 10.93 3.56 85.63 0.30 11.23 16 10 C -0.51 -28.69 8.09 25.60 0.21 -28.48 16 11 H 0.03 2.01 7.86 -2.91 -0.02 1.99 16 12 C 0.01 0.74 5.47 84.66 0.46 1.21 16 13 N -0.95 -58.12 13.96 21.45 0.30 -57.82 16 14 Si 0.94 42.37 27.57 68.60 1.89 44.26 16 15 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 16 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 17 H -0.24 -9.68 6.40 99.48 0.64 -9.05 16 18 C 0.23 9.80 5.82 38.21 0.22 10.02 16 19 C -0.23 -10.00 9.16 22.40 0.21 -9.80 16 20 C -0.09 -3.16 10.04 22.25 0.22 -2.94 16 21 C -0.20 -6.47 10.04 22.29 0.22 -6.25 16 22 C -0.08 -2.64 10.04 22.25 0.22 -2.41 16 23 C -0.20 -7.53 8.36 22.40 0.19 -7.34 16 24 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.07 1.31 8.12 -2.39 -0.02 1.29 16 26 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 27 H 0.10 2.73 6.24 -2.39 -0.01 2.71 16 28 H 0.14 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.05 2.18 6.51 -2.39 -0.02 2.17 16 31 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.04 1.72 4.75 -2.38 -0.01 1.70 16 33 H 0.01 0.64 6.00 -2.39 -0.01 0.62 16 34 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 35 H 0.10 4.75 6.26 -2.91 -0.02 4.73 16 36 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 37 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 38 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 39 H 0.12 4.16 5.74 -2.91 -0.02 4.14 16 Total: -1.00 -71.58 312.21 5.94 -65.64 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 0.97 Total: 23.55 kcal Atomic # 6 Polarization: -36.16 SS G_CDS: 4.08 Total: -32.09 kcal Atomic # 7 Polarization: -83.56 SS G_CDS: -0.97 Total: -84.54 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.02 Total: -16.82 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 1.89 Total: 44.26 kcal Total: -71.58 5.94 -65.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084273453.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.932 kcal (2) G-P(sol) polarization free energy of solvation -71.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds