Wall clock time and date at job start Mon Mar 30 2020 06:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09000 * 109.46668 * 2 1 4 4 N 1.46897 * 109.46892 * 119.99482 * 2 1 3 5 5 C 1.50693 * 109.47113 * 239.99825 * 2 1 3 6 6 C 1.38165 * 120.02853 * 263.07270 * 5 2 1 7 7 C 1.38250 * 120.05644 * 179.97438 * 6 5 2 8 8 C 1.38287 * 120.11160 * 0.02562 * 7 6 5 9 9 C 1.38123 * 120.05377 * 0.02562 * 8 7 6 10 10 C 1.38716 * 120.02708 * 83.36956 * 5 2 1 11 11 O 1.35894 * 120.06032 * 0.02562 * 10 5 2 12 12 C 1.42896 * 117.00200 * 185.33404 * 11 10 5 13 13 C 1.53006 * 109.47330 * 183.62597 * 12 11 10 14 14 C 1.50695 * 115.55331 * 275.73395 * 13 12 11 15 15 H 1.08000 * 120.00504 * 114.40082 * 14 13 12 16 16 C 1.37885 * 119.99890 * 294.40173 * 14 13 12 17 17 N 1.31513 * 119.99851 * 353.32634 * 16 14 13 18 18 Si 1.86801 * 119.99812 * 173.32062 * 16 14 13 19 19 H 1.48493 * 109.47270 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46612 * 120.00247 * 18 16 14 21 21 H 1.48493 * 109.47046 * 240.00008 * 18 16 14 22 22 C 1.52995 * 117.49759 * 130.02029 * 13 12 11 23 23 C 1.53001 * 117.49392 * 61.39863 * 13 12 11 24 24 H 1.08992 * 109.46894 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47258 * 300.00228 * 1 2 3 26 26 H 1.09003 * 109.47016 * 60.00214 * 1 2 3 27 27 H 1.00901 * 111.00520 * 296.05040 * 4 2 1 28 28 H 1.00901 * 110.99735 * 60.00051 * 4 2 1 29 29 H 1.08001 * 119.97267 * 359.97438 * 6 5 2 30 30 H 1.08000 * 119.94199 * 179.97438 * 7 6 5 31 31 H 1.07998 * 119.97236 * 180.02562 * 8 7 6 32 32 H 1.08005 * 120.02867 * 180.02562 * 9 8 7 33 33 H 1.08998 * 109.47586 * 303.63013 * 12 11 10 34 34 H 1.09008 * 109.47475 * 63.63308 * 12 11 10 35 35 H 0.96995 * 119.99982 * 185.01065 * 17 16 14 36 36 H 1.09006 * 117.50162 * 0.02562 * 22 13 12 37 37 H 1.09002 * 117.49732 * 145.02437 * 22 13 12 38 38 H 1.09000 * 117.50202 * 214.97818 * 23 13 12 39 39 H 1.09007 * 117.50191 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0324 -0.7104 -1.2304 6 6 2.3989 -2.0407 -1.1595 7 6 2.8593 -2.6931 -2.2881 8 6 2.9548 -2.0164 -3.4902 9 6 2.5906 -0.6862 -3.5661 10 6 2.1331 -0.0277 -2.4337 11 8 1.7794 1.2826 -2.5046 12 6 1.7969 1.8902 -3.7978 13 6 1.4608 3.3772 -3.6672 14 6 -0.0083 3.7105 -3.6284 15 1 -0.4430 4.1322 -2.7341 16 6 -0.7977 3.4773 -4.7346 17 7 -0.2481 3.0883 -5.8643 18 14 -2.6476 3.7135 -4.6285 19 1 -3.0128 4.1524 -3.2577 20 1 -3.0716 4.7461 -5.6079 21 1 -3.3289 2.4303 -4.9359 22 6 2.3943 4.3754 -4.3549 23 6 2.4042 4.2438 -2.8306 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.7502 -0.1989 2.0373 28 1 1.6961 -1.6478 1.2228 29 1 2.3257 -2.5713 -0.2217 30 1 3.1457 -3.7329 -2.2305 31 1 3.3143 -2.5284 -4.3705 32 1 2.6650 -0.1582 -4.5053 33 1 2.7877 1.7790 -4.2382 34 1 1.0587 1.4057 -4.4370 35 1 -0.7926 2.9944 -6.6615 36 1 3.2476 3.9729 -4.9007 37 1 1.9458 5.2736 -4.7796 38 1 1.9623 5.0553 -2.2524 39 1 3.2640 3.7545 -2.3728 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088248989.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:38 Heat of formation + Delta-G solvation = 5.855523 kcal Electronic energy + Delta-G solvation = -19839.472831 eV Core-core repulsion = 16940.790596 eV Total energy + Delta-G solvation = -2898.682235 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.83154 -37.49798 -35.80119 -35.47907 -32.07792 -30.16136 -29.68537 -28.11746 -26.59136 -25.29680 -23.34605 -21.72848 -21.12983 -20.29621 -19.08609 -17.61554 -16.55453 -15.94720 -15.43909 -15.02402 -14.64903 -14.49987 -14.11140 -13.86630 -13.66547 -13.25866 -12.92330 -12.84552 -12.26944 -11.95263 -11.82997 -11.53330 -11.42432 -11.02687 -11.00594 -10.77175 -10.55300 -10.35293 -10.24162 -10.18637 -9.55061 -8.92586 -8.73460 -8.59449 -8.45049 -8.24100 -7.57223 -6.12455 -4.16583 1.67490 1.86693 3.23613 3.32582 3.36794 3.95512 4.13242 4.34443 4.66492 5.00287 5.10778 5.20448 5.33369 5.39731 5.50670 5.52910 5.66258 5.76258 5.94829 5.98864 6.02729 6.17278 6.22683 6.31928 6.39134 6.43664 6.55961 6.65090 6.71624 6.74902 6.83421 6.85672 6.98387 7.20498 7.28112 7.34839 7.39441 7.50610 7.82340 8.21180 8.34454 8.83486 9.47719 10.96150 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018530 B = 0.006341 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.716798 B = 4414.348916 C = 4640.595314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.138 3.862 3 H 0.095 0.905 4 N -0.843 5.843 5 C -0.118 4.118 6 C -0.072 4.072 7 C -0.176 4.176 8 C -0.084 4.084 9 C -0.213 4.213 10 C 0.152 3.848 11 O -0.301 6.301 12 C 0.105 3.895 13 C 0.046 3.954 14 C -0.487 4.487 15 H 0.063 0.937 16 C 0.069 3.931 17 N -0.884 5.884 18 Si 0.891 3.109 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.165 4.165 23 C -0.198 4.198 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.074 0.926 27 H 0.340 0.660 28 H 0.334 0.666 29 H 0.122 0.878 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.129 0.871 33 H 0.031 0.969 34 H 0.077 0.923 35 H 0.262 0.738 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.993 -8.777 7.576 12.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.027 3.973 3 H 0.113 0.887 4 N -0.373 5.373 5 C -0.119 4.119 6 C -0.091 4.091 7 C -0.194 4.194 8 C -0.102 4.102 9 C -0.232 4.232 10 C 0.104 3.896 11 O -0.213 6.213 12 C 0.031 3.969 13 C 0.046 3.954 14 C -0.525 4.525 15 H 0.081 0.919 16 C -0.134 4.134 17 N -0.521 5.521 18 Si 0.718 3.282 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.203 4.203 23 C -0.235 4.235 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.152 0.848 28 H 0.147 0.853 29 H 0.140 0.860 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.147 0.853 33 H 0.049 0.951 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.599 -8.585 7.251 12.142 hybrid contribution -1.913 -0.052 -0.287 1.935 sum 2.686 -8.637 6.964 11.416 Atomic orbital electron populations 1.22534 0.96741 1.01437 1.03100 1.20046 0.92244 0.97972 0.87053 0.88662 1.59015 1.67517 1.06298 1.04443 1.19036 1.05871 0.93989 0.93001 1.20625 0.97449 0.93090 0.97908 1.20870 1.05500 0.99824 0.93217 1.20867 0.98058 0.93808 0.97510 1.21341 1.06771 0.96346 0.98712 1.18994 0.92601 0.84822 0.93201 1.86142 1.81313 1.19364 1.34488 1.22624 0.98505 0.94935 0.80853 1.18731 0.92373 0.85671 0.98657 1.20513 0.90574 1.41953 0.99453 0.91889 1.24995 0.98583 0.94458 0.95365 1.69951 1.35792 1.46482 0.99849 0.86543 0.85492 0.77821 0.78300 1.19573 1.20941 1.20866 1.22756 1.01424 1.03068 0.93037 1.22812 1.02577 1.04366 0.93724 0.93266 0.92843 0.90669 0.84763 0.85251 0.86006 0.86698 0.86508 0.85332 0.95076 0.90470 0.92854 0.91724 0.89735 0.90298 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.61 9.46 37.16 0.35 -2.26 16 2 C 0.14 2.09 3.30 -68.86 -0.23 1.86 16 3 H 0.10 1.64 7.74 -51.93 -0.40 1.23 16 4 N -0.84 -10.13 8.78 -5.65 -0.05 -10.18 16 5 C -0.12 -1.97 5.08 -104.48 -0.53 -2.50 16 6 C -0.07 -1.05 9.26 -39.60 -0.37 -1.41 16 7 C -0.18 -2.45 10.04 -39.56 -0.40 -2.85 16 8 C -0.08 -1.27 10.04 -39.61 -0.40 -1.67 16 9 C -0.21 -3.79 9.07 -39.43 -0.36 -4.14 16 10 C 0.15 2.91 6.65 -39.21 -0.26 2.65 16 11 O -0.30 -6.51 9.23 -19.41 -0.18 -6.69 16 12 C 0.11 2.42 4.61 37.16 0.17 2.59 16 13 C 0.05 1.13 1.54 -155.66 -0.24 0.89 16 14 C -0.49 -13.14 8.82 -34.44 -0.30 -13.45 16 15 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 16 C 0.07 1.85 5.24 -17.82 -0.09 1.76 16 17 N -0.88 -24.37 12.56 55.43 0.70 -23.67 16 18 Si 0.89 20.88 29.55 -169.99 -5.02 15.86 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C -0.17 -3.77 9.88 -26.73 -0.26 -4.03 16 23 C -0.20 -4.32 9.88 -26.73 -0.26 -4.58 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.34 3.45 9.07 -39.29 -0.36 3.09 16 28 H 0.33 3.46 7.23 -39.29 -0.28 3.18 16 29 H 0.12 1.46 6.27 -52.49 -0.33 1.13 16 30 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 32 H 0.13 2.31 6.28 -52.48 -0.33 1.98 16 33 H 0.03 0.67 6.98 -51.93 -0.36 0.31 16 34 H 0.08 1.95 7.16 -51.92 -0.37 1.58 16 35 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 36 H 0.06 1.37 8.06 -51.93 -0.42 0.96 16 37 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 38 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 39 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 324.24 15.07 4.89 4.89 Total: -1.00 -28.21 324.24 -8.63 -36.84 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -5.78 Total: 10.12 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: -3.18 Total: -27.16 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.65 Total: -33.85 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.18 Total: -6.69 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.21 -8.63 -36.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088248989.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.694 kcal (2) G-P(sol) polarization free energy of solvation -28.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds