Wall clock time and date at job start Mon Mar 30 2020 06:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09000 * 109.46668 * 2 1 4 4 N 1.46897 * 109.46892 * 119.99482 * 2 1 3 5 5 C 1.50693 * 109.47113 * 239.99825 * 2 1 3 6 6 C 1.38165 * 120.02853 * 263.07270 * 5 2 1 7 7 C 1.38250 * 120.05644 * 179.97438 * 6 5 2 8 8 C 1.38287 * 120.11160 * 0.02562 * 7 6 5 9 9 C 1.38123 * 120.05377 * 0.02562 * 8 7 6 10 10 C 1.38716 * 120.02708 * 83.36956 * 5 2 1 11 11 O 1.35894 * 120.06032 * 0.02562 * 10 5 2 12 12 C 1.42896 * 117.00200 * 185.33404 * 11 10 5 13 13 C 1.53006 * 109.47330 * 183.62597 * 12 11 10 14 14 C 1.50695 * 115.55331 * 275.73395 * 13 12 11 15 15 H 1.08000 * 120.00504 * 114.40082 * 14 13 12 16 16 C 1.37885 * 119.99890 * 294.40173 * 14 13 12 17 17 N 1.31513 * 119.99851 * 353.32634 * 16 14 13 18 18 Si 1.86801 * 119.99812 * 173.32062 * 16 14 13 19 19 H 1.48493 * 109.47270 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46612 * 120.00247 * 18 16 14 21 21 H 1.48493 * 109.47046 * 240.00008 * 18 16 14 22 22 C 1.52995 * 117.49759 * 130.02029 * 13 12 11 23 23 C 1.53001 * 117.49392 * 61.39863 * 13 12 11 24 24 H 1.08992 * 109.46894 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47258 * 300.00228 * 1 2 3 26 26 H 1.09003 * 109.47016 * 60.00214 * 1 2 3 27 27 H 1.00901 * 111.00520 * 296.05040 * 4 2 1 28 28 H 1.00901 * 110.99735 * 60.00051 * 4 2 1 29 29 H 1.08001 * 119.97267 * 359.97438 * 6 5 2 30 30 H 1.08000 * 119.94199 * 179.97438 * 7 6 5 31 31 H 1.07998 * 119.97236 * 180.02562 * 8 7 6 32 32 H 1.08005 * 120.02867 * 180.02562 * 9 8 7 33 33 H 1.08998 * 109.47586 * 303.63013 * 12 11 10 34 34 H 1.09008 * 109.47475 * 63.63308 * 12 11 10 35 35 H 0.96995 * 119.99982 * 185.01065 * 17 16 14 36 36 H 1.09006 * 117.50162 * 0.02562 * 22 13 12 37 37 H 1.09002 * 117.49732 * 145.02437 * 22 13 12 38 38 H 1.09000 * 117.50202 * 214.97818 * 23 13 12 39 39 H 1.09007 * 117.50191 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0324 -0.7104 -1.2304 6 6 2.3989 -2.0407 -1.1595 7 6 2.8593 -2.6931 -2.2881 8 6 2.9548 -2.0164 -3.4902 9 6 2.5906 -0.6862 -3.5661 10 6 2.1331 -0.0277 -2.4337 11 8 1.7794 1.2826 -2.5046 12 6 1.7969 1.8902 -3.7978 13 6 1.4608 3.3772 -3.6672 14 6 -0.0083 3.7105 -3.6284 15 1 -0.4430 4.1322 -2.7341 16 6 -0.7977 3.4773 -4.7346 17 7 -0.2481 3.0883 -5.8643 18 14 -2.6476 3.7135 -4.6285 19 1 -3.0128 4.1524 -3.2577 20 1 -3.0716 4.7461 -5.6079 21 1 -3.3289 2.4303 -4.9359 22 6 2.3943 4.3754 -4.3549 23 6 2.4042 4.2438 -2.8306 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.7502 -0.1989 2.0373 28 1 1.6961 -1.6478 1.2228 29 1 2.3257 -2.5713 -0.2217 30 1 3.1457 -3.7329 -2.2305 31 1 3.3143 -2.5284 -4.3705 32 1 2.6650 -0.1582 -4.5053 33 1 2.7877 1.7790 -4.2382 34 1 1.0587 1.4057 -4.4370 35 1 -0.7926 2.9944 -6.6615 36 1 3.2476 3.9729 -4.9007 37 1 1.9458 5.2736 -4.7796 38 1 1.9623 5.0553 -2.2524 39 1 3.2640 3.7545 -2.3728 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088248989.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:37 Heat of formation + Delta-G solvation = -10.343663 kcal Electronic energy + Delta-G solvation = -19840.175280 eV Core-core repulsion = 16940.790596 eV Total energy + Delta-G solvation = -2899.384684 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.20035 -39.06762 -37.44375 -36.67526 -34.12664 -31.35283 -30.97036 -29.28062 -28.36110 -27.26277 -24.56442 -23.18525 -22.83497 -21.61622 -20.87342 -18.97635 -18.34354 -17.33182 -16.87656 -16.70770 -16.30364 -15.99634 -15.42024 -15.29315 -15.08996 -14.61628 -14.43825 -14.01632 -13.82788 -13.44378 -13.30495 -13.09187 -12.91053 -12.84999 -12.62853 -12.39124 -12.13829 -11.98325 -11.85289 -11.59647 -11.39064 -10.85811 -10.55425 -10.13781 -9.82896 -9.60859 -8.93416 -8.17688 -6.27474 0.44220 0.59359 1.35681 1.39157 1.49677 2.37344 2.41930 2.88393 3.07665 3.55547 3.58979 3.85615 4.00986 4.11446 4.21781 4.28895 4.34137 4.39486 4.44820 4.51847 4.58573 4.69172 4.74664 4.80213 4.91877 4.96142 4.99145 5.14508 5.18326 5.24680 5.46376 5.52896 5.53977 5.60658 5.63070 5.74474 6.01224 6.25493 6.32881 6.63797 6.70778 6.75277 7.39020 8.90614 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018530 B = 0.006341 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.716798 B = 4414.348916 C = 4640.595314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.144 3.856 3 H 0.067 0.933 4 N -0.837 5.837 5 C -0.127 4.127 6 C -0.070 4.070 7 C -0.163 4.163 8 C -0.087 4.087 9 C -0.231 4.231 10 C 0.110 3.890 11 O -0.317 6.317 12 C 0.126 3.874 13 C 0.014 3.986 14 C -0.506 4.506 15 H 0.051 0.949 16 C 0.027 3.973 17 N -0.907 5.907 18 Si 0.948 3.052 19 H -0.269 1.269 20 H -0.276 1.276 21 H -0.282 1.282 22 C -0.162 4.162 23 C -0.177 4.177 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.035 0.965 27 H 0.352 0.648 28 H 0.348 0.652 29 H 0.154 0.846 30 H 0.154 0.846 31 H 0.144 0.856 32 H 0.114 0.886 33 H 0.037 0.963 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.360 -10.813 8.983 14.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.032 3.968 3 H 0.085 0.915 4 N -0.369 5.369 5 C -0.128 4.128 6 C -0.088 4.088 7 C -0.181 4.181 8 C -0.105 4.105 9 C -0.250 4.250 10 C 0.064 3.936 11 O -0.231 6.231 12 C 0.051 3.949 13 C 0.013 3.987 14 C -0.543 4.543 15 H 0.069 0.931 16 C -0.173 4.173 17 N -0.545 5.545 18 Si 0.773 3.227 19 H -0.193 1.193 20 H -0.201 1.201 21 H -0.207 1.207 22 C -0.200 4.200 23 C -0.214 4.214 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.055 0.945 27 H 0.167 0.833 28 H 0.162 0.838 29 H 0.171 0.829 30 H 0.172 0.828 31 H 0.162 0.838 32 H 0.132 0.868 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.972 -10.629 8.679 14.595 hybrid contribution -1.973 0.460 -0.661 2.131 sum 2.999 -10.169 8.018 13.293 Atomic orbital electron populations 1.22468 0.96565 1.02084 1.01973 1.19821 0.92228 0.96786 0.87952 0.91452 1.58923 1.67252 1.06980 1.03736 1.19351 1.05807 0.95070 0.92597 1.21038 0.96167 0.92073 0.99572 1.21361 1.03144 1.01416 0.92160 1.21217 0.97330 0.92630 0.99344 1.21418 1.07865 0.97851 0.97863 1.19399 0.95087 0.84145 0.94982 1.86083 1.82553 1.21227 1.33237 1.22134 0.97560 0.93909 0.81298 1.18857 0.91905 0.86907 1.01020 1.20726 0.92291 1.42184 0.99127 0.93099 1.25639 1.02327 0.94295 0.95061 1.70040 1.37062 1.47143 1.00255 0.85656 0.80857 0.77776 0.78373 1.19308 1.20125 1.20744 1.22709 1.01293 1.02064 0.93923 1.22796 1.02021 1.03422 0.93165 0.91667 0.91158 0.94534 0.83350 0.83755 0.82874 0.82802 0.83842 0.86774 0.94494 0.93780 0.92791 0.90329 0.90907 0.89985 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.93 9.46 71.99 0.68 -4.25 16 2 C 0.14 4.25 3.30 44.17 0.15 4.40 16 3 H 0.07 2.37 7.74 -2.39 -0.02 2.35 16 4 N -0.84 -18.03 8.78 -171.80 -1.51 -19.54 16 5 C -0.13 -4.15 5.08 -19.77 -0.10 -4.25 16 6 C -0.07 -1.82 9.26 22.26 0.21 -1.62 16 7 C -0.16 -3.94 10.04 22.28 0.22 -3.71 16 8 C -0.09 -2.45 10.04 22.25 0.22 -2.23 16 9 C -0.23 -8.33 9.07 22.37 0.20 -8.13 16 10 C 0.11 4.32 6.65 22.51 0.15 4.47 16 11 O -0.32 -14.40 9.23 -92.35 -0.85 -15.25 16 12 C 0.13 6.07 4.61 71.98 0.33 6.40 16 13 C 0.01 0.69 1.54 -52.93 -0.08 0.60 16 14 C -0.51 -28.16 8.82 25.60 0.23 -27.94 16 15 H 0.05 2.87 7.82 -2.91 -0.02 2.84 16 16 C 0.03 1.50 5.24 84.66 0.44 1.94 16 17 N -0.91 -51.37 12.56 21.45 0.27 -51.11 16 18 Si 0.95 43.64 29.55 68.60 2.03 45.67 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 22 C -0.16 -7.51 9.88 30.59 0.30 -7.21 16 23 C -0.18 -7.80 9.88 30.60 0.30 -7.49 16 24 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.35 6.26 9.07 -89.69 -0.81 5.45 16 28 H 0.35 5.93 7.23 -89.69 -0.65 5.28 16 29 H 0.15 2.95 6.27 -2.91 -0.02 2.93 16 30 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 31 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 32 H 0.11 4.32 6.28 -2.91 -0.02 4.30 16 33 H 0.04 1.68 6.98 -2.39 -0.02 1.66 16 34 H 0.04 2.37 7.16 -2.38 -0.02 2.35 16 35 H 0.26 14.15 8.32 -92.71 -0.77 13.38 16 36 H 0.08 3.36 8.06 -2.38 -0.02 3.34 16 37 H 0.07 3.50 8.14 -2.39 -0.02 3.48 16 38 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 39 H 0.08 3.45 8.14 -2.38 -0.02 3.44 16 Total: -1.00 -62.54 324.24 2.78 -59.75 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: -0.41 Total: 29.49 kcal Atomic # 6 Polarization: -52.27 SS G_CDS: 3.26 Total: -49.02 kcal Atomic # 7 Polarization: -69.40 SS G_CDS: -1.24 Total: -70.64 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.85 Total: -15.25 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -62.54 2.78 -59.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088248989.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.407 kcal (2) G-P(sol) polarization free energy of solvation -62.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds