Wall clock time and date at job start Mon Mar 30 2020 06:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.46905 * 2 1 4 4 N 1.46897 * 109.47167 * 240.00564 * 2 1 3 5 5 C 1.50694 * 109.47215 * 120.00420 * 2 1 3 6 6 C 1.38287 * 119.97100 * 80.00404 * 5 2 1 7 7 C 1.38253 * 120.10927 * 180.02562 * 6 5 2 8 8 C 1.38162 * 120.05729 * 359.97438 * 7 6 5 9 9 C 1.38706 * 119.94379 * 359.97438 * 8 7 6 10 10 O 1.35899 * 120.05778 * 179.72776 * 9 8 7 11 11 C 1.42904 * 116.99796 * 0.02562 * 10 9 8 12 12 C 1.53002 * 109.47027 * 180.02562 * 11 10 9 13 13 C 1.50696 * 115.54943 * 65.11445 * 12 11 10 14 14 H 1.08003 * 119.99934 * 266.10842 * 13 12 11 15 15 C 1.37875 * 120.00506 * 86.10862 * 13 12 11 16 16 N 1.31515 * 119.99813 * 353.70669 * 15 13 12 17 17 Si 1.86799 * 120.00265 * 173.70576 * 15 13 12 18 18 H 1.48497 * 109.47181 * 60.00379 * 17 15 13 19 19 H 1.48507 * 109.47113 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46905 * 300.00005 * 17 15 13 21 21 C 1.52998 * 117.50033 * 279.43991 * 12 11 10 22 22 C 1.52996 * 117.49418 * 210.78069 * 12 11 10 23 23 C 1.38123 * 119.97369 * 259.99486 * 5 2 1 24 24 H 1.09001 * 109.47730 * 59.99806 * 1 2 3 25 25 H 1.09004 * 109.46977 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47153 * 299.99088 * 1 2 3 27 27 H 1.00897 * 111.00325 * 296.04358 * 4 2 1 28 28 H 1.00902 * 111.00108 * 59.99887 * 4 2 1 29 29 H 1.07993 * 119.94781 * 0.02562 * 6 5 2 30 30 H 1.07997 * 119.96584 * 179.97438 * 7 6 5 31 31 H 1.08001 * 120.02974 * 179.97438 * 8 7 6 32 32 H 1.08999 * 109.47136 * 300.00208 * 11 10 9 33 33 H 1.08998 * 109.47034 * 60.00089 * 11 10 9 34 34 H 0.97003 * 120.00192 * 179.97438 * 16 15 13 35 35 H 1.08999 * 117.49380 * 0.02562 * 21 12 11 36 36 H 1.08998 * 117.49950 * 145.02081 * 21 12 11 37 37 H 1.09005 * 117.49586 * 214.97974 * 22 12 11 38 38 H 1.08999 * 117.50303 * 359.97438 * 22 12 11 39 39 H 1.08001 * 120.02962 * 0.02562 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0323 -0.7105 1.2304 6 6 2.0665 -2.0925 1.2645 7 6 2.5264 -2.7472 2.3919 8 6 2.9534 -2.0219 3.4875 9 6 2.9211 -0.6356 3.4554 10 8 3.3354 0.0801 4.5338 11 6 3.7927 -0.6605 5.6672 12 6 4.2136 0.3087 6.7737 13 6 3.1064 1.1458 7.3605 14 1 2.9117 2.1339 6.9703 15 6 2.3419 0.6504 8.3954 16 7 2.4951 -0.5954 8.7882 17 14 1.0886 1.7485 9.2396 18 1 0.0883 2.2133 8.2454 19 1 0.4029 0.9835 10.3120 20 1 1.7788 2.9217 9.8332 21 6 5.5997 0.9472 6.6640 22 6 5.3365 -0.1362 7.7129 23 6 2.4583 0.0192 2.3230 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.7503 -1.6647 -1.1911 28 1 1.6961 -0.2348 -2.0386 29 1 1.7336 -2.6613 0.4090 30 1 2.5517 -3.8266 2.4162 31 1 3.3122 -2.5338 4.3683 32 1 2.9889 -1.3003 6.0315 33 1 4.6448 -1.2760 5.3792 34 1 1.9575 -0.9439 9.5165 35 1 6.2115 0.6770 5.8033 36 1 5.7108 1.9726 7.0165 37 1 5.2746 0.1770 8.7551 38 1 5.7750 -1.1195 7.5428 39 1 2.4311 1.0986 2.2960 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088248994.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:39 Heat of formation + Delta-G solvation = 3.947573 kcal Electronic energy + Delta-G solvation = -19197.396968 eV Core-core repulsion = 16298.631998 eV Total energy + Delta-G solvation = -2898.764970 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.74809 -37.87019 -36.18217 -35.01037 -31.95419 -30.73425 -29.31079 -28.48273 -26.62172 -25.28910 -23.29018 -22.23476 -21.15256 -20.18742 -19.11327 -17.45761 -16.41817 -16.11843 -15.43924 -15.16720 -14.96231 -14.54721 -14.31797 -13.78405 -13.62558 -13.50661 -13.17712 -12.87972 -12.41534 -12.19375 -11.82590 -11.66158 -11.36178 -11.16477 -10.96988 -10.89654 -10.56277 -10.41142 -10.30940 -10.15914 -9.58050 -8.96169 -8.86097 -8.47505 -8.45753 -8.21138 -7.64148 -6.07259 -4.11456 1.62162 1.85282 3.30964 3.34975 3.38533 3.91583 4.06470 4.39922 4.55157 4.75174 5.02027 5.12274 5.21840 5.24448 5.34056 5.41590 5.48411 5.62067 5.68779 5.82605 5.94243 5.96271 6.08449 6.19777 6.29684 6.31960 6.51348 6.61243 6.71472 6.74936 6.78103 6.83715 7.01586 7.02154 7.15972 7.29905 7.35884 7.44211 7.86768 8.20889 8.41275 8.89867 9.54153 11.02286 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.023041 B = 0.004841 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.942568 B = 5782.155539 C = 6280.208724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.128 3.872 3 H 0.090 0.910 4 N -0.841 5.841 5 C -0.039 4.039 6 C -0.165 4.165 7 C -0.079 4.079 8 C -0.216 4.216 9 C 0.152 3.848 10 O -0.295 6.295 11 C 0.105 3.895 12 C 0.039 3.961 13 C -0.487 4.487 14 H 0.062 0.938 15 C 0.069 3.931 16 N -0.884 5.884 17 Si 0.892 3.108 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.205 4.205 22 C -0.145 4.145 23 C -0.157 4.157 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.340 0.660 28 H 0.340 0.660 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.127 0.873 32 H 0.068 0.932 33 H 0.030 0.970 34 H 0.261 0.739 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.867 -2.920 -14.741 15.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.017 3.983 3 H 0.108 0.892 4 N -0.371 5.371 5 C -0.040 4.040 6 C -0.183 4.183 7 C -0.097 4.097 8 C -0.235 4.235 9 C 0.105 3.895 10 O -0.207 6.207 11 C 0.031 3.969 12 C 0.039 3.961 13 C -0.525 4.525 14 H 0.080 0.920 15 C -0.133 4.133 16 N -0.521 5.521 17 Si 0.720 3.280 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.243 4.243 22 C -0.183 4.183 23 C -0.176 4.176 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.153 0.847 28 H 0.153 0.847 29 H 0.130 0.870 30 H 0.136 0.864 31 H 0.145 0.855 32 H 0.086 0.914 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.191 -2.659 -14.284 14.578 hybrid contribution -1.709 -0.030 0.490 1.778 sum -2.901 -2.689 -13.794 14.350 Atomic orbital electron populations 1.22612 0.96784 1.02290 1.02482 1.20299 0.92145 0.97879 0.87978 0.89241 1.58935 1.67550 1.06835 1.03745 1.19333 0.97465 0.93446 0.93751 1.20544 1.05785 0.93609 0.98392 1.20827 0.96896 0.99249 0.92701 1.21351 1.07991 0.93439 1.00747 1.19184 0.92025 0.90260 0.88044 1.86192 1.76579 1.35885 1.22082 1.22624 0.96905 0.94336 0.83078 1.18719 0.87972 0.96292 0.93115 1.20353 1.14678 1.00976 1.16482 0.92001 1.24986 0.96771 0.94913 0.96667 1.69984 1.40403 1.13537 1.28144 0.86656 0.81468 0.80701 0.79217 1.20140 1.21279 1.20127 1.23004 1.02782 0.97801 1.00667 1.22528 1.03527 0.96046 0.96195 1.20187 1.05296 1.00096 0.92067 0.92551 0.92497 0.91472 0.84654 0.84745 0.87006 0.86403 0.85475 0.91385 0.95182 0.92930 0.91516 0.90129 0.89483 0.91742 0.85560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.77 9.46 37.16 0.35 -1.42 16 2 C 0.13 1.43 3.61 -68.87 -0.25 1.19 16 3 H 0.09 1.01 8.00 -51.93 -0.42 0.60 16 4 N -0.84 -8.10 9.12 -5.66 -0.05 -8.16 16 5 C -0.04 -0.56 4.95 -104.65 -0.52 -1.08 16 6 C -0.16 -2.25 9.27 -39.56 -0.37 -2.62 16 7 C -0.08 -1.16 10.04 -39.60 -0.40 -1.56 16 8 C -0.22 -3.80 9.04 -39.44 -0.36 -4.16 16 9 C 0.15 2.97 6.69 -39.22 -0.26 2.70 16 10 O -0.30 -6.69 10.06 -19.42 -0.20 -6.88 16 11 C 0.11 2.42 4.56 37.16 0.17 2.59 16 12 C 0.04 0.98 1.62 -155.66 -0.25 0.73 16 13 C -0.49 -13.43 8.77 -34.44 -0.30 -13.73 16 14 H 0.06 1.73 7.82 -52.48 -0.41 1.32 16 15 C 0.07 1.90 5.38 -17.82 -0.10 1.80 16 16 N -0.88 -24.72 12.88 55.43 0.71 -24.01 16 17 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 21 C -0.21 -4.55 9.96 -26.70 -0.27 -4.81 16 22 C -0.15 -3.37 9.37 -26.70 -0.25 -3.62 16 23 C -0.16 -2.68 9.61 -39.43 -0.38 -3.06 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.34 2.94 7.20 -39.29 -0.28 2.66 16 28 H 0.34 2.52 9.04 -39.29 -0.36 2.16 16 29 H 0.11 1.23 6.59 -52.49 -0.35 0.88 16 30 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.13 2.22 6.30 -52.49 -0.33 1.89 16 32 H 0.07 1.68 7.66 -51.93 -0.40 1.28 16 33 H 0.03 0.63 7.61 -51.93 -0.40 0.24 16 34 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 37 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 38 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 39 H 0.13 2.04 8.04 -52.49 -0.42 1.62 16 LS Contribution 326.87 15.07 4.93 4.93 Total: -1.00 -29.20 326.87 -8.67 -37.87 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -5.87 Total: 7.09 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: -3.17 Total: -27.03 kcal Atomic # 7 Polarization: -32.83 SS G_CDS: 0.66 Total: -32.16 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.20 Total: -6.88 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.20 -8.67 -37.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088248994.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.822 kcal (2) G-P(sol) polarization free energy of solvation -29.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds