Wall clock time and date at job start Mon Mar 30 2020 06:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.46905 * 2 1 4 4 N 1.46897 * 109.47167 * 240.00564 * 2 1 3 5 5 C 1.50694 * 109.47215 * 120.00420 * 2 1 3 6 6 C 1.38287 * 119.97100 * 80.00404 * 5 2 1 7 7 C 1.38253 * 120.10927 * 180.02562 * 6 5 2 8 8 C 1.38162 * 120.05729 * 359.97438 * 7 6 5 9 9 C 1.38706 * 119.94379 * 359.97438 * 8 7 6 10 10 O 1.35899 * 120.05778 * 179.72776 * 9 8 7 11 11 C 1.42904 * 116.99796 * 0.02562 * 10 9 8 12 12 C 1.53002 * 109.47027 * 180.02562 * 11 10 9 13 13 C 1.50696 * 115.54943 * 65.11445 * 12 11 10 14 14 H 1.08003 * 119.99934 * 266.10842 * 13 12 11 15 15 C 1.37875 * 120.00506 * 86.10862 * 13 12 11 16 16 N 1.31515 * 119.99813 * 353.70669 * 15 13 12 17 17 Si 1.86799 * 120.00265 * 173.70576 * 15 13 12 18 18 H 1.48497 * 109.47181 * 60.00379 * 17 15 13 19 19 H 1.48507 * 109.47113 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46905 * 300.00005 * 17 15 13 21 21 C 1.52998 * 117.50033 * 279.43991 * 12 11 10 22 22 C 1.52996 * 117.49418 * 210.78069 * 12 11 10 23 23 C 1.38123 * 119.97369 * 259.99486 * 5 2 1 24 24 H 1.09001 * 109.47730 * 59.99806 * 1 2 3 25 25 H 1.09004 * 109.46977 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47153 * 299.99088 * 1 2 3 27 27 H 1.00897 * 111.00325 * 296.04358 * 4 2 1 28 28 H 1.00902 * 111.00108 * 59.99887 * 4 2 1 29 29 H 1.07993 * 119.94781 * 0.02562 * 6 5 2 30 30 H 1.07997 * 119.96584 * 179.97438 * 7 6 5 31 31 H 1.08001 * 120.02974 * 179.97438 * 8 7 6 32 32 H 1.08999 * 109.47136 * 300.00208 * 11 10 9 33 33 H 1.08998 * 109.47034 * 60.00089 * 11 10 9 34 34 H 0.97003 * 120.00192 * 179.97438 * 16 15 13 35 35 H 1.08999 * 117.49380 * 0.02562 * 21 12 11 36 36 H 1.08998 * 117.49950 * 145.02081 * 21 12 11 37 37 H 1.09005 * 117.49586 * 214.97974 * 22 12 11 38 38 H 1.08999 * 117.50303 * 359.97438 * 22 12 11 39 39 H 1.08001 * 120.02962 * 0.02562 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0323 -0.7105 1.2304 6 6 2.0665 -2.0925 1.2645 7 6 2.5264 -2.7472 2.3919 8 6 2.9534 -2.0219 3.4875 9 6 2.9211 -0.6356 3.4554 10 8 3.3354 0.0801 4.5338 11 6 3.7927 -0.6605 5.6672 12 6 4.2136 0.3087 6.7737 13 6 3.1064 1.1458 7.3605 14 1 2.9117 2.1339 6.9703 15 6 2.3419 0.6504 8.3954 16 7 2.4951 -0.5954 8.7882 17 14 1.0886 1.7485 9.2396 18 1 0.0883 2.2133 8.2454 19 1 0.4029 0.9835 10.3120 20 1 1.7788 2.9217 9.8332 21 6 5.5997 0.9472 6.6640 22 6 5.3365 -0.1362 7.7129 23 6 2.4583 0.0192 2.3230 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.7503 -1.6647 -1.1911 28 1 1.6961 -0.2348 -2.0386 29 1 1.7336 -2.6613 0.4090 30 1 2.5517 -3.8266 2.4162 31 1 3.3122 -2.5338 4.3683 32 1 2.9889 -1.3003 6.0315 33 1 4.6448 -1.2760 5.3792 34 1 1.9575 -0.9439 9.5165 35 1 6.2115 0.6770 5.8033 36 1 5.7108 1.9726 7.0165 37 1 5.2746 0.1770 8.7551 38 1 5.7750 -1.1195 7.5428 39 1 2.4311 1.0986 2.2960 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088248994.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:39 Heat of formation + Delta-G solvation = -13.224747 kcal Electronic energy + Delta-G solvation = -19198.141615 eV Core-core repulsion = 16298.631998 eV Total energy + Delta-G solvation = -2899.509618 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.10329 -39.30487 -37.81747 -36.16965 -34.03216 -31.92493 -30.55098 -29.34265 -28.36625 -27.28113 -24.40046 -23.49962 -22.95228 -21.52409 -20.88547 -18.71514 -18.25908 -17.24795 -16.90183 -16.79013 -16.38538 -16.33452 -15.68164 -15.05988 -14.82194 -14.72466 -14.37791 -14.14592 -13.83490 -13.53997 -13.36240 -13.08299 -12.93828 -12.84154 -12.46274 -12.32952 -12.27020 -12.09256 -11.82806 -11.63495 -11.43120 -10.80531 -10.49332 -10.09607 -9.90258 -9.51194 -9.02810 -8.15492 -6.25535 0.38800 0.57252 1.40018 1.40690 1.48439 2.36806 2.43102 2.83491 3.13581 3.48611 3.67770 3.82857 3.93376 4.15282 4.16654 4.23757 4.30482 4.39762 4.41106 4.45033 4.57090 4.62686 4.66635 4.80872 4.87870 4.95003 5.02857 5.11554 5.17161 5.21243 5.44300 5.50139 5.56996 5.57587 5.62912 5.73046 5.95156 6.25459 6.35261 6.66587 6.68775 6.77808 7.42306 8.93198 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.023041 B = 0.004841 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.942568 B = 5782.155539 C = 6280.208724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.132 3.868 3 H 0.086 0.914 4 N -0.844 5.844 5 C -0.036 4.036 6 C -0.154 4.154 7 C -0.077 4.077 8 C -0.232 4.232 9 C 0.113 3.887 10 O -0.322 6.322 11 C 0.123 3.877 12 C 0.004 3.996 13 C -0.507 4.507 14 H 0.046 0.954 15 C 0.027 3.973 16 N -0.906 5.906 17 Si 0.949 3.051 18 H -0.277 1.277 19 H -0.280 1.280 20 H -0.270 1.270 21 C -0.185 4.185 22 C -0.141 4.141 23 C -0.172 4.172 24 H 0.078 0.922 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.347 0.653 28 H 0.355 0.645 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.119 0.881 32 H 0.040 0.960 33 H 0.046 0.954 34 H 0.262 0.738 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.429 -3.583 -16.879 17.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.020 3.980 3 H 0.104 0.896 4 N -0.377 5.377 5 C -0.037 4.037 6 C -0.172 4.172 7 C -0.095 4.095 8 C -0.251 4.251 9 C 0.067 3.933 10 O -0.236 6.236 11 C 0.048 3.952 12 C 0.004 3.996 13 C -0.545 4.545 14 H 0.064 0.936 15 C -0.173 4.173 16 N -0.544 5.544 17 Si 0.774 3.226 18 H -0.202 1.202 19 H -0.205 1.205 20 H -0.195 1.195 21 C -0.222 4.222 22 C -0.179 4.179 23 C -0.191 4.191 24 H 0.097 0.903 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.162 0.838 28 H 0.170 0.830 29 H 0.166 0.834 30 H 0.167 0.833 31 H 0.137 0.863 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.752 -3.321 -16.445 16.869 hybrid contribution -1.558 0.148 0.997 1.856 sum -3.310 -3.174 -15.449 16.115 Atomic orbital electron populations 1.22563 0.95402 1.02799 1.02869 1.20228 0.93037 0.97426 0.87269 0.89605 1.58874 1.67724 1.07392 1.03685 1.19732 0.95915 0.94060 0.93946 1.21001 1.03764 0.93520 0.98960 1.21209 0.95605 1.00798 0.91858 1.21435 1.09018 0.92883 1.01749 1.19548 0.94468 0.91308 0.87983 1.86113 1.77832 1.36834 1.22805 1.22222 0.96357 0.93476 0.83134 1.18882 0.88489 0.97678 0.94593 1.20561 1.16004 1.00810 1.17081 0.93557 1.25637 0.98412 0.96090 0.97173 1.70072 1.41221 1.14615 1.28451 0.85760 0.79291 0.79271 0.78232 1.20217 1.20525 1.19468 1.22998 1.00947 0.97511 1.00746 1.22453 1.02962 0.97253 0.95214 1.20382 1.05932 1.00370 0.92433 0.90335 0.91909 0.92971 0.83790 0.83035 0.83362 0.83308 0.86301 0.94211 0.93576 0.92914 0.89306 0.90136 0.91307 0.90009 0.85834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.97 9.46 71.98 0.68 -2.29 16 2 C 0.13 2.64 3.61 44.17 0.16 2.80 16 3 H 0.09 1.80 8.00 -2.39 -0.02 1.78 16 4 N -0.84 -13.43 9.12 -171.82 -1.57 -14.99 16 5 C -0.04 -0.97 4.95 -19.88 -0.10 -1.07 16 6 C -0.15 -3.76 9.27 22.28 0.21 -3.55 16 7 C -0.08 -2.11 10.04 22.26 0.22 -1.88 16 8 C -0.23 -8.20 9.04 22.36 0.20 -8.00 16 9 C 0.11 4.51 6.69 22.51 0.15 4.66 16 10 O -0.32 -15.21 10.06 -92.42 -0.93 -16.14 16 11 C 0.12 5.86 4.56 71.98 0.33 6.19 16 12 C 0.00 0.20 1.62 -52.93 -0.09 0.12 16 13 C -0.51 -28.76 8.77 25.60 0.22 -28.53 16 14 H 0.05 2.68 7.82 -2.91 -0.02 2.66 16 15 C 0.03 1.53 5.38 84.65 0.46 1.98 16 16 N -0.91 -51.72 12.88 21.45 0.28 -51.45 16 17 Si 0.95 44.19 29.54 68.60 2.03 46.22 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 C -0.18 -8.17 9.96 30.62 0.30 -7.86 16 22 C -0.14 -6.60 9.37 30.62 0.29 -6.31 16 23 C -0.17 -5.91 9.61 22.37 0.21 -5.70 16 24 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.35 4.58 7.20 -89.70 -0.65 3.94 16 28 H 0.35 4.01 9.04 -89.69 -0.81 3.20 16 29 H 0.15 2.54 6.59 -2.91 -0.02 2.52 16 30 H 0.15 3.11 8.06 -2.91 -0.02 3.08 16 31 H 0.12 4.28 6.30 -2.91 -0.02 4.27 16 32 H 0.04 2.06 7.66 -2.39 -0.02 2.05 16 33 H 0.05 1.98 7.61 -2.39 -0.02 1.96 16 34 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 35 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 36 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 37 H 0.07 3.43 8.14 -2.38 -0.02 3.41 16 38 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 39 H 0.12 4.15 8.04 -2.91 -0.02 4.13 16 Total: -1.00 -64.11 326.87 2.65 -61.46 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: -0.40 Total: 24.36 kcal Atomic # 6 Polarization: -52.70 SS G_CDS: 3.25 Total: -49.45 kcal Atomic # 7 Polarization: -65.15 SS G_CDS: -1.29 Total: -66.44 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.93 Total: -16.14 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -64.11 2.65 -61.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088248994.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.233 kcal (2) G-P(sol) polarization free energy of solvation -64.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds