Wall clock time and date at job start Mon Mar 30 2020 06:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47552 * 2 1 4 4 N 1.46897 * 109.47317 * 120.00526 * 2 1 3 5 5 C 1.50703 * 109.47407 * 240.00398 * 2 1 3 6 6 C 1.38288 * 119.97069 * 279.72727 * 5 2 1 7 7 C 1.38251 * 120.11379 * 179.76485 * 6 5 2 8 8 C 1.38170 * 120.05014 * 0.50517 * 7 6 5 9 9 C 1.38705 * 119.94496 * 359.75011 * 8 7 6 10 10 O 1.35903 * 120.05384 * 180.02562 * 9 8 7 11 11 C 1.42901 * 117.00022 * 359.97321 * 10 9 8 12 12 C 1.52993 * 109.46968 * 180.02562 * 11 10 9 13 13 C 1.50699 * 115.55454 * 65.11217 * 12 11 10 14 14 H 1.08004 * 119.99733 * 266.11510 * 13 12 11 15 15 C 1.37879 * 120.00242 * 86.10403 * 13 12 11 16 16 N 1.31520 * 119.99796 * 353.71815 * 15 13 12 17 17 Si 1.86798 * 120.00242 * 173.70902 * 15 13 12 18 18 H 1.48498 * 109.46974 * 60.00231 * 17 15 13 19 19 H 1.48499 * 109.47212 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47129 * 300.00825 * 17 15 13 21 21 C 1.53004 * 117.49854 * 279.43947 * 12 11 10 22 22 C 1.53005 * 117.49683 * 210.78141 * 12 11 10 23 23 C 1.38117 * 119.97790 * 99.99577 * 5 2 1 24 24 H 1.09004 * 109.46896 * 59.99696 * 1 2 3 25 25 H 1.09003 * 109.47548 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47341 * 299.99991 * 1 2 3 27 27 H 1.00904 * 110.99511 * 300.00264 * 4 2 1 28 28 H 1.00897 * 111.00475 * 63.95182 * 4 2 1 29 29 H 1.08000 * 119.94577 * 0.02562 * 6 5 2 30 30 H 1.07999 * 119.97457 * 180.25480 * 7 6 5 31 31 H 1.07995 * 120.02460 * 179.72492 * 8 7 6 32 32 H 1.08997 * 109.47091 * 300.00555 * 11 10 9 33 33 H 1.09002 * 109.46697 * 60.00326 * 11 10 9 34 34 H 0.96992 * 119.99813 * 179.97438 * 16 15 13 35 35 H 1.08993 * 117.50095 * 0.02562 * 21 12 11 36 36 H 1.09006 * 117.49871 * 145.02269 * 21 12 11 37 37 H 1.09007 * 117.49365 * 214.97808 * 22 12 11 38 38 H 1.08992 * 117.49924 * 359.97438 * 22 12 11 39 39 H 1.08007 * 120.02333 * 0.02562 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 1.1993 5 6 2.0324 -0.7103 -1.2305 6 6 2.0718 -2.0923 -1.2627 7 6 2.5276 -2.7470 -2.3918 8 6 2.9548 -2.0214 -3.4874 9 6 2.9211 -0.6352 -3.4555 10 8 3.3402 0.0807 -4.5320 11 6 3.8037 -0.6597 -5.6630 12 6 4.2305 0.3097 -6.7670 13 6 5.4165 1.1815 -6.4438 14 1 5.2649 2.1702 -6.0364 15 6 6.6952 0.7169 -6.6681 16 7 6.8855 -0.5282 -7.0463 17 14 8.1571 1.8561 -6.4349 18 1 8.1912 2.3364 -5.0302 19 1 9.4111 1.1204 -6.7376 20 1 8.0312 3.0172 -7.3521 21 6 3.1301 0.9107 -7.6438 22 6 4.0689 -0.1544 -8.2160 23 6 2.4582 0.0194 -2.3231 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6961 -0.2351 2.0385 28 1 1.7502 -1.6649 1.1908 29 1 1.7421 -2.6611 -0.4059 30 1 2.5536 -3.8264 -2.4161 31 1 3.3149 -2.5333 -4.3675 32 1 4.6549 -1.2746 -5.3707 33 1 3.0022 -1.3001 -6.0312 34 1 7.7850 -0.8549 -7.2044 35 1 2.1020 0.6158 -7.4339 36 1 3.2641 1.9365 -7.9872 37 1 4.8203 0.1712 -8.9355 38 1 3.6589 -1.1505 -8.3826 39 1 2.4316 1.0988 -2.2957 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088248995.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:41 Heat of formation + Delta-G solvation = 4.207123 kcal Electronic energy + Delta-G solvation = -19189.626842 eV Core-core repulsion = 16290.873127 eV Total energy + Delta-G solvation = -2898.753715 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.74874 -37.87109 -36.18253 -35.01131 -31.94388 -30.73438 -29.30934 -28.50010 -26.62121 -25.28133 -23.29443 -22.23434 -21.15737 -20.18872 -19.11018 -17.45828 -16.41443 -16.11799 -15.43821 -15.17773 -14.96322 -14.47080 -14.34074 -13.89549 -13.62777 -13.42718 -13.19678 -12.87558 -12.41096 -12.22271 -11.86575 -11.63383 -11.35238 -11.16003 -10.95825 -10.89405 -10.55548 -10.41156 -10.31190 -10.15607 -9.57748 -8.94882 -8.85658 -8.47687 -8.44733 -8.20876 -7.64181 -6.06223 -4.10462 1.62018 1.85271 3.32680 3.36617 3.40265 3.90612 4.07473 4.41364 4.55196 4.74221 5.01815 5.10148 5.21906 5.24717 5.33741 5.41819 5.46852 5.61187 5.67766 5.82266 5.90380 5.95925 6.08161 6.19288 6.29644 6.31856 6.51113 6.61130 6.71134 6.74557 6.78364 6.83753 7.01841 7.02633 7.16119 7.30997 7.35923 7.44100 7.87951 8.20927 8.41773 8.90854 9.55284 11.03350 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.023446 B = 0.004755 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.926763 B = 5887.209960 C = 6271.987504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.128 3.872 3 H 0.090 0.910 4 N -0.840 5.840 5 C -0.040 4.040 6 C -0.164 4.164 7 C -0.079 4.079 8 C -0.216 4.216 9 C 0.152 3.848 10 O -0.295 6.295 11 C 0.105 3.895 12 C 0.040 3.960 13 C -0.488 4.488 14 H 0.062 0.938 15 C 0.070 3.930 16 N -0.884 5.884 17 Si 0.892 3.108 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.205 4.205 22 C -0.145 4.145 23 C -0.157 4.157 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.340 0.660 28 H 0.340 0.660 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.127 0.873 32 H 0.068 0.932 33 H 0.030 0.970 34 H 0.261 0.739 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.201 -3.062 11.042 16.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.017 3.983 3 H 0.108 0.892 4 N -0.370 5.370 5 C -0.040 4.040 6 C -0.183 4.183 7 C -0.097 4.097 8 C -0.235 4.235 9 C 0.105 3.895 10 O -0.207 6.207 11 C 0.031 3.969 12 C 0.039 3.961 13 C -0.525 4.525 14 H 0.080 0.920 15 C -0.133 4.133 16 N -0.521 5.521 17 Si 0.720 3.280 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.243 4.243 22 C -0.183 4.183 23 C -0.176 4.176 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.153 0.847 28 H 0.153 0.847 29 H 0.130 0.870 30 H 0.136 0.864 31 H 0.145 0.855 32 H 0.086 0.914 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.082 0.918 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.291 -2.798 10.678 15.091 hybrid contribution -0.078 -0.007 0.160 0.178 sum -10.369 -2.806 10.838 15.260 Atomic orbital electron populations 1.22610 0.96860 1.02219 1.02401 1.20305 0.92046 0.97950 0.88023 0.89214 1.58918 1.67595 1.06801 1.03717 1.19334 0.97533 0.93447 0.93702 1.20545 1.05861 0.93613 0.98296 1.20830 0.96905 0.99251 0.92697 1.21353 1.07712 0.93444 1.01018 1.19182 0.91804 0.90252 0.88277 1.86192 1.76111 1.35896 1.22540 1.22624 0.95906 0.94198 0.84216 1.18721 0.94328 0.96331 0.86678 1.20351 0.88698 1.00444 1.43038 0.91995 1.24987 0.98774 0.94981 0.94586 1.69982 1.21820 1.14203 1.46061 0.86651 0.81630 0.80900 0.78848 1.20084 1.21270 1.20147 1.23004 0.94309 0.98080 1.08880 1.22529 1.01010 0.95958 0.98798 1.20185 1.05367 1.00090 0.91990 0.91593 0.92522 0.92543 0.84728 0.84651 0.87002 0.86401 0.85475 0.91354 0.95221 0.92920 0.91564 0.90132 0.89473 0.91755 0.85562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 9.46 37.15 0.35 -1.32 16 2 C 0.13 1.43 3.61 -68.87 -0.25 1.18 16 3 H 0.09 1.03 8.00 -51.93 -0.42 0.61 16 4 N -0.84 -8.33 9.12 -5.66 -0.05 -8.38 16 5 C -0.04 -0.57 4.95 -104.65 -0.52 -1.09 16 6 C -0.16 -2.25 9.27 -39.56 -0.37 -2.62 16 7 C -0.08 -1.16 10.04 -39.60 -0.40 -1.56 16 8 C -0.22 -3.80 9.04 -39.43 -0.36 -4.16 16 9 C 0.15 2.97 6.69 -39.22 -0.26 2.70 16 10 O -0.30 -6.69 10.06 -19.44 -0.20 -6.89 16 11 C 0.11 2.43 4.56 37.15 0.17 2.59 16 12 C 0.04 1.00 1.62 -155.66 -0.25 0.74 16 13 C -0.49 -13.49 8.77 -34.44 -0.30 -13.79 16 14 H 0.06 1.74 7.82 -52.48 -0.41 1.33 16 15 C 0.07 1.91 5.38 -17.82 -0.10 1.82 16 16 N -0.88 -24.84 12.88 55.43 0.71 -24.13 16 17 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 C -0.21 -4.53 9.96 -26.69 -0.27 -4.80 16 22 C -0.15 -3.37 9.37 -26.69 -0.25 -3.62 16 23 C -0.16 -2.68 9.61 -39.44 -0.38 -3.06 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.34 2.59 9.04 -39.29 -0.36 2.23 16 28 H 0.34 3.00 7.19 -39.29 -0.28 2.72 16 29 H 0.11 1.23 6.58 -52.49 -0.35 0.88 16 30 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.13 2.22 6.30 -52.49 -0.33 1.89 16 32 H 0.07 1.69 7.66 -51.93 -0.40 1.30 16 33 H 0.03 0.62 7.61 -51.93 -0.40 0.22 16 34 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 37 H 0.09 2.13 8.14 -51.92 -0.42 1.71 16 38 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.13 2.04 8.04 -52.48 -0.42 1.62 16 LS Contribution 326.86 15.07 4.93 4.93 Total: -1.00 -29.41 326.86 -8.67 -38.08 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -5.87 Total: 7.00 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: -3.17 Total: -26.96 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: 0.66 Total: -32.51 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.20 Total: -6.89 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.41 -8.67 -38.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088248995.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.288 kcal (2) G-P(sol) polarization free energy of solvation -29.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds