Wall clock time and date at job start Mon Mar 30 2020 06:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47552 * 2 1 4 4 N 1.46897 * 109.47317 * 120.00526 * 2 1 3 5 5 C 1.50703 * 109.47407 * 240.00398 * 2 1 3 6 6 C 1.38288 * 119.97069 * 279.72727 * 5 2 1 7 7 C 1.38251 * 120.11379 * 179.76485 * 6 5 2 8 8 C 1.38170 * 120.05014 * 0.50517 * 7 6 5 9 9 C 1.38705 * 119.94496 * 359.75011 * 8 7 6 10 10 O 1.35903 * 120.05384 * 180.02562 * 9 8 7 11 11 C 1.42901 * 117.00022 * 359.97321 * 10 9 8 12 12 C 1.52993 * 109.46968 * 180.02562 * 11 10 9 13 13 C 1.50699 * 115.55454 * 65.11217 * 12 11 10 14 14 H 1.08004 * 119.99733 * 266.11510 * 13 12 11 15 15 C 1.37879 * 120.00242 * 86.10403 * 13 12 11 16 16 N 1.31520 * 119.99796 * 353.71815 * 15 13 12 17 17 Si 1.86798 * 120.00242 * 173.70902 * 15 13 12 18 18 H 1.48498 * 109.46974 * 60.00231 * 17 15 13 19 19 H 1.48499 * 109.47212 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47129 * 300.00825 * 17 15 13 21 21 C 1.53004 * 117.49854 * 279.43947 * 12 11 10 22 22 C 1.53005 * 117.49683 * 210.78141 * 12 11 10 23 23 C 1.38117 * 119.97790 * 99.99577 * 5 2 1 24 24 H 1.09004 * 109.46896 * 59.99696 * 1 2 3 25 25 H 1.09003 * 109.47548 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47341 * 299.99991 * 1 2 3 27 27 H 1.00904 * 110.99511 * 300.00264 * 4 2 1 28 28 H 1.00897 * 111.00475 * 63.95182 * 4 2 1 29 29 H 1.08000 * 119.94577 * 0.02562 * 6 5 2 30 30 H 1.07999 * 119.97457 * 180.25480 * 7 6 5 31 31 H 1.07995 * 120.02460 * 179.72492 * 8 7 6 32 32 H 1.08997 * 109.47091 * 300.00555 * 11 10 9 33 33 H 1.09002 * 109.46697 * 60.00326 * 11 10 9 34 34 H 0.96992 * 119.99813 * 179.97438 * 16 15 13 35 35 H 1.08993 * 117.50095 * 0.02562 * 21 12 11 36 36 H 1.09006 * 117.49871 * 145.02269 * 21 12 11 37 37 H 1.09007 * 117.49365 * 214.97808 * 22 12 11 38 38 H 1.08992 * 117.49924 * 359.97438 * 22 12 11 39 39 H 1.08007 * 120.02333 * 0.02562 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 1.1993 5 6 2.0324 -0.7103 -1.2305 6 6 2.0718 -2.0923 -1.2627 7 6 2.5276 -2.7470 -2.3918 8 6 2.9548 -2.0214 -3.4874 9 6 2.9211 -0.6352 -3.4555 10 8 3.3402 0.0807 -4.5320 11 6 3.8037 -0.6597 -5.6630 12 6 4.2305 0.3097 -6.7670 13 6 5.4165 1.1815 -6.4438 14 1 5.2649 2.1702 -6.0364 15 6 6.6952 0.7169 -6.6681 16 7 6.8855 -0.5282 -7.0463 17 14 8.1571 1.8561 -6.4349 18 1 8.1912 2.3364 -5.0302 19 1 9.4111 1.1204 -6.7376 20 1 8.0312 3.0172 -7.3521 21 6 3.1301 0.9107 -7.6438 22 6 4.0689 -0.1544 -8.2160 23 6 2.4582 0.0194 -2.3231 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6961 -0.2351 2.0385 28 1 1.7502 -1.6649 1.1908 29 1 1.7421 -2.6611 -0.4059 30 1 2.5536 -3.8264 -2.4161 31 1 3.3149 -2.5333 -4.3675 32 1 4.6549 -1.2746 -5.3707 33 1 3.0022 -1.3001 -6.0312 34 1 7.7850 -0.8549 -7.2044 35 1 2.1020 0.6158 -7.4339 36 1 3.2641 1.9365 -7.9872 37 1 4.8203 0.1712 -8.9355 38 1 3.6589 -1.1505 -8.3826 39 1 2.4316 1.0988 -2.2957 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088248995.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:41 Heat of formation + Delta-G solvation = -13.185841 kcal Electronic energy + Delta-G solvation = -19190.381058 eV Core-core repulsion = 16290.873127 eV Total energy + Delta-G solvation = -2899.507931 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.10311 -39.30420 -37.81592 -36.16958 -34.03014 -31.92706 -30.55190 -29.33980 -28.36443 -27.27978 -24.39641 -23.49849 -22.95140 -21.52374 -20.88407 -18.71625 -18.25910 -17.25107 -16.90123 -16.79137 -16.40397 -16.31770 -15.62770 -15.21856 -14.73656 -14.63297 -14.43329 -14.14349 -13.84292 -13.52209 -13.33191 -13.17959 -12.90868 -12.79493 -12.46732 -12.31422 -12.26659 -12.10731 -11.82413 -11.63363 -11.43041 -10.80485 -10.49160 -10.09304 -9.90115 -9.50606 -9.02795 -8.15504 -6.25433 0.38745 0.57275 1.40102 1.40983 1.48562 2.36802 2.43174 2.83503 3.13687 3.48789 3.68067 3.82565 3.93718 4.14942 4.16763 4.24599 4.30498 4.39721 4.41863 4.45227 4.57504 4.62993 4.66810 4.81442 4.88852 4.95039 5.03203 5.11617 5.17290 5.22194 5.44459 5.50342 5.57138 5.57757 5.63039 5.73221 5.95199 6.26323 6.35265 6.66695 6.68828 6.77946 7.42461 8.93186 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.023446 B = 0.004755 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.926763 B = 5887.209960 C = 6271.987504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.131 3.869 3 H 0.084 0.916 4 N -0.847 5.847 5 C -0.036 4.036 6 C -0.154 4.154 7 C -0.077 4.077 8 C -0.232 4.232 9 C 0.113 3.887 10 O -0.322 6.322 11 C 0.123 3.877 12 C 0.004 3.996 13 C -0.507 4.507 14 H 0.046 0.954 15 C 0.027 3.973 16 N -0.906 5.906 17 Si 0.949 3.051 18 H -0.277 1.277 19 H -0.280 1.280 20 H -0.269 1.269 21 C -0.184 4.184 22 C -0.141 4.141 23 C -0.172 4.172 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.355 0.645 28 H 0.348 0.652 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.119 0.881 32 H 0.038 0.962 33 H 0.047 0.953 34 H 0.262 0.738 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.413 -3.741 12.902 18.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.019 3.981 3 H 0.102 0.898 4 N -0.380 5.380 5 C -0.037 4.037 6 C -0.172 4.172 7 C -0.095 4.095 8 C -0.251 4.251 9 C 0.067 3.933 10 O -0.236 6.236 11 C 0.048 3.952 12 C 0.003 3.997 13 C -0.545 4.545 14 H 0.064 0.936 15 C -0.173 4.173 16 N -0.544 5.544 17 Si 0.774 3.226 18 H -0.203 1.203 19 H -0.205 1.205 20 H -0.194 1.194 21 C -0.221 4.221 22 C -0.179 4.179 23 C -0.191 4.191 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.170 0.830 28 H 0.162 0.838 29 H 0.166 0.834 30 H 0.167 0.833 31 H 0.137 0.863 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.520 -3.476 12.554 17.390 hybrid contribution 0.227 0.176 -0.279 0.401 sum -11.293 -3.299 12.275 17.003 Atomic orbital electron populations 1.22542 0.94997 1.02879 1.02982 1.20245 0.93336 0.97306 0.87185 0.89828 1.58858 1.67920 1.07420 1.03784 1.19735 0.95983 0.94059 0.93878 1.21000 1.03855 0.93524 0.98861 1.21211 0.95607 1.00798 0.91852 1.21436 1.08700 0.92888 1.02069 1.19546 0.94175 0.91296 0.88285 1.86113 1.77217 1.36860 1.23401 1.22220 0.95339 0.93409 0.84218 1.18879 0.95119 0.97662 0.88022 1.20566 0.90350 1.00319 1.43239 0.93577 1.25638 1.00983 0.96266 0.94444 1.70070 1.22228 1.15300 1.46758 0.85765 0.78872 0.79391 0.78565 1.20303 1.20509 1.19402 1.22998 0.94780 0.97802 1.06533 1.22454 1.00966 0.97198 0.97269 1.20378 1.06047 1.00356 0.92332 0.92585 0.91795 0.90454 0.83030 0.83753 0.83367 0.83308 0.86304 0.94321 0.93464 0.92918 0.89226 0.90151 0.91336 0.89982 0.85847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 9.46 71.98 0.68 -2.03 16 2 C 0.13 2.62 3.61 44.17 0.16 2.78 16 3 H 0.08 1.79 8.00 -2.39 -0.02 1.77 16 4 N -0.85 -14.08 9.12 -171.81 -1.57 -15.65 16 5 C -0.04 -0.97 4.95 -19.88 -0.10 -1.07 16 6 C -0.15 -3.76 9.27 22.28 0.21 -3.55 16 7 C -0.08 -2.11 10.04 22.26 0.22 -1.88 16 8 C -0.23 -8.20 9.04 22.37 0.20 -8.00 16 9 C 0.11 4.51 6.69 22.50 0.15 4.67 16 10 O -0.32 -15.21 10.06 -92.46 -0.93 -16.14 16 11 C 0.12 5.86 4.56 71.98 0.33 6.19 16 12 C 0.00 0.18 1.62 -52.93 -0.09 0.10 16 13 C -0.51 -28.88 8.77 25.60 0.22 -28.66 16 14 H 0.05 2.68 7.82 -2.91 -0.02 2.66 16 15 C 0.03 1.52 5.38 84.65 0.46 1.98 16 16 N -0.91 -52.00 12.88 21.45 0.28 -51.72 16 17 Si 0.95 44.55 29.54 68.60 2.03 46.57 16 18 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 21 C -0.18 -8.08 9.96 30.62 0.30 -7.77 16 22 C -0.14 -6.59 9.37 30.62 0.29 -6.30 16 23 C -0.17 -5.91 9.61 22.36 0.21 -5.70 16 24 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.35 4.23 9.04 -89.69 -0.81 3.42 16 28 H 0.35 4.75 7.19 -89.70 -0.65 4.11 16 29 H 0.15 2.54 6.58 -2.91 -0.02 2.52 16 30 H 0.15 3.11 8.06 -2.91 -0.02 3.08 16 31 H 0.12 4.28 6.30 -2.91 -0.02 4.27 16 32 H 0.04 2.02 7.66 -2.39 -0.02 2.00 16 33 H 0.05 2.01 7.61 -2.39 -0.02 1.99 16 34 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 35 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 36 H 0.08 3.49 8.14 -2.38 -0.02 3.47 16 37 H 0.07 3.41 8.14 -2.38 -0.02 3.39 16 38 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 39 H 0.12 4.15 8.04 -2.91 -0.02 4.12 16 Total: -1.00 -64.65 326.86 2.66 -61.99 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: -0.40 Total: 24.20 kcal Atomic # 6 Polarization: -52.51 SS G_CDS: 3.25 Total: -49.25 kcal Atomic # 7 Polarization: -66.08 SS G_CDS: -1.29 Total: -67.37 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.93 Total: -16.14 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -64.65 2.66 -61.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088248995.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.808 kcal (2) G-P(sol) polarization free energy of solvation -64.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds