Wall clock time and date at job start Mon Mar 30 2020 06:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 110.99950 * 2 1 4 4 C 1.50702 * 109.47274 * 180.02562 * 3 2 1 5 5 C 1.38165 * 120.02849 * 255.59374 * 4 3 2 6 6 C 1.38247 * 120.05494 * 179.97438 * 5 4 3 7 7 C 1.38291 * 120.11117 * 0.02562 * 6 5 4 8 8 C 1.38127 * 120.05450 * 359.95403 * 7 6 5 9 9 C 1.38717 * 120.02439 * 75.54924 * 4 3 2 10 10 O 1.35897 * 120.05814 * 0.04011 * 9 4 3 11 11 C 1.42904 * 117.00078 * 174.83871 * 10 9 4 12 12 C 1.52998 * 109.47041 * 184.85870 * 11 10 9 13 13 C 1.50700 * 115.55025 * 275.55109 * 12 11 10 14 14 H 1.08001 * 119.99828 * 114.64353 * 13 12 11 15 15 C 1.37872 * 120.00120 * 294.65120 * 13 12 11 16 16 N 1.31520 * 120.00340 * 352.53534 * 15 13 12 17 17 Si 1.86808 * 120.00060 * 172.54191 * 15 13 12 18 18 H 1.48495 * 109.46866 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.46875 * 119.99539 * 17 15 13 20 20 H 1.48504 * 109.46870 * 239.99196 * 17 15 13 21 21 C 1.52999 * 117.49838 * 129.84838 * 12 11 10 22 22 C 1.52996 * 117.49997 * 61.22382 * 12 11 10 23 23 H 1.08999 * 109.47102 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46673 * 299.99735 * 1 2 3 25 25 H 1.08997 * 109.47648 * 59.99747 * 1 2 3 26 26 H 1.00895 * 111.00547 * 123.95469 * 2 1 3 27 27 H 1.09000 * 109.47457 * 60.00326 * 3 2 1 28 28 H 1.09005 * 109.47147 * 300.00404 * 3 2 1 29 29 H 1.07995 * 119.97473 * 0.25757 * 5 4 3 30 30 H 1.07994 * 119.94536 * 179.97438 * 6 5 4 31 31 H 1.07996 * 119.97137 * 179.97438 * 7 6 5 32 32 H 1.08000 * 120.02530 * 179.97438 * 8 7 6 33 33 H 1.09002 * 109.46741 * 304.86339 * 11 10 9 34 34 H 1.09003 * 109.46747 * 64.85896 * 11 10 9 35 35 H 0.96990 * 120.00335 * 185.01096 * 16 15 13 36 36 H 1.09005 * 117.49729 * 359.97438 * 21 12 11 37 37 H 1.08997 * 117.49916 * 145.02046 * 21 12 11 38 38 H 1.08997 * 117.49780 * 214.97823 * 22 12 11 39 39 H 1.08995 * 117.49815 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5019 1.3313 -0.0006 5 6 4.2015 1.6102 1.1577 6 6 5.5835 1.5730 1.1579 7 6 6.2692 1.2572 -0.0008 8 6 5.5743 0.9772 -1.1613 9 6 4.1873 1.0134 -1.1640 10 8 3.5015 0.7386 -2.3046 11 6 4.2713 0.5309 -3.4905 12 6 3.3311 0.3564 -4.6848 13 6 2.8009 -1.0383 -4.8964 14 1 1.7453 -1.2373 -4.7854 15 6 3.6636 -2.0603 -5.2315 16 7 4.9211 -1.7946 -5.5103 17 14 3.0462 -3.8224 -5.2898 18 1 1.6041 -3.8535 -4.9369 19 1 3.2332 -4.3673 -6.6585 20 1 3.8107 -4.6471 -4.3199 21 6 3.6036 1.2052 -5.9283 22 6 2.4055 1.5242 -5.0317 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.8307 -0.5261 0.7813 27 1 1.6460 1.8948 0.8900 28 1 1.6459 1.8948 -0.8900 29 1 3.6683 1.8529 2.0649 30 1 6.1285 1.7917 2.0642 31 1 7.3488 1.2292 0.0017 32 1 6.1103 0.7311 -2.0661 33 1 4.9177 1.3922 -3.6595 34 1 4.8820 -0.3646 -3.3749 35 1 5.5100 -2.5020 -5.8163 36 1 4.4525 1.8882 -5.8953 37 1 3.3995 0.7549 -6.8996 38 1 1.4133 1.2837 -5.4133 39 1 2.4661 2.4166 -4.4089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088249027.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:06 Heat of formation + Delta-G solvation = 12.246972 kcal Electronic energy + Delta-G solvation = -19745.918455 eV Core-core repulsion = 16847.513374 eV Total energy + Delta-G solvation = -2898.405081 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.69902 -37.35621 -35.69312 -35.57577 -31.99833 -31.25517 -29.54818 -26.74969 -26.18074 -25.22015 -23.33799 -21.81200 -21.17108 -20.85570 -19.06745 -17.37939 -16.44204 -15.77164 -15.42659 -14.99874 -14.71802 -14.50248 -14.09702 -14.04600 -13.67173 -13.59114 -12.90719 -12.45871 -12.10686 -11.96969 -11.85413 -11.53188 -11.45571 -11.03396 -10.95549 -10.91225 -10.53222 -10.36170 -10.21839 -10.11903 -9.48174 -8.86624 -8.60618 -8.51891 -8.16571 -8.10196 -7.56458 -6.04665 -4.07434 1.60879 1.87461 3.30547 3.39137 3.44787 4.03848 4.05689 4.42545 4.68339 5.05214 5.12928 5.18238 5.34360 5.42804 5.47289 5.56898 5.60922 5.71316 5.83550 5.91864 6.02590 6.07402 6.11346 6.26287 6.35599 6.37994 6.58889 6.68237 6.73263 6.75572 6.81240 6.87768 7.02948 7.22356 7.25740 7.39339 7.45942 7.64445 7.90694 8.30337 8.42815 8.92182 9.56266 11.04030 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.006712 C = 0.006120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.419788 B = 4170.615778 C = 4573.856404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.678 5.678 3 C 0.117 3.883 4 C -0.138 4.138 5 C -0.079 4.079 6 C -0.180 4.180 7 C -0.078 4.078 8 C -0.218 4.218 9 C 0.174 3.826 10 O -0.284 6.284 11 C 0.103 3.897 12 C 0.050 3.950 13 C -0.482 4.482 14 H 0.063 0.937 15 C 0.068 3.932 16 N -0.886 5.886 17 Si 0.892 3.108 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.283 1.283 21 C -0.167 4.167 22 C -0.197 4.197 23 H 0.065 0.935 24 H 0.012 0.988 25 H 0.066 0.934 26 H 0.336 0.664 27 H 0.027 0.973 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.130 0.870 33 H 0.029 0.971 34 H 0.076 0.924 35 H 0.260 0.740 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.289 6.312 11.480 13.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.308 5.308 3 C -0.012 4.012 4 C -0.139 4.139 5 C -0.098 4.098 6 C -0.198 4.198 7 C -0.096 4.096 8 C -0.237 4.237 9 C 0.125 3.875 10 O -0.196 6.196 11 C 0.029 3.971 12 C 0.049 3.951 13 C -0.519 4.519 14 H 0.081 0.919 15 C -0.134 4.134 16 N -0.523 5.523 17 Si 0.720 3.280 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.209 1.209 21 C -0.204 4.204 22 C -0.234 4.234 23 H 0.084 0.916 24 H 0.031 0.969 25 H 0.085 0.915 26 H 0.153 0.847 27 H 0.045 0.955 28 H 0.100 0.900 29 H 0.136 0.864 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.148 0.852 33 H 0.047 0.953 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.294 6.112 10.731 12.417 hybrid contribution 0.020 -0.740 0.711 1.027 sum -1.274 5.371 11.442 12.704 Atomic orbital electron populations 1.22157 0.87993 1.01675 0.99875 1.60264 1.07105 1.13705 1.49716 1.20609 0.90238 0.89919 1.00405 1.19089 0.95241 1.07618 0.92000 1.20753 0.94105 0.98665 0.96263 1.20818 0.94109 1.06696 0.98202 1.20893 0.99350 0.96987 0.92370 1.21425 0.93680 1.08401 1.00192 1.19009 0.90027 0.90912 0.87574 1.86262 1.35937 1.82376 1.14986 1.22625 0.93675 0.98926 0.81901 1.18703 0.95344 0.91364 0.89659 1.20505 0.93939 0.90393 1.47108 0.91888 1.24979 0.94763 0.98923 0.94753 1.69959 1.04934 1.32952 1.44489 0.86526 0.79281 0.84782 0.77440 1.19557 1.21135 1.20898 1.22764 0.97401 1.03438 0.96847 1.22783 0.95160 1.00523 1.04937 0.91619 0.96923 0.91508 0.84658 0.95474 0.89974 0.86436 0.86701 0.86470 0.85242 0.95285 0.90549 0.92976 0.91816 0.89764 0.90359 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.70 60.07 0.64 1.07 16 2 N -0.68 -10.64 6.84 -122.42 -0.84 -11.48 16 3 C 0.12 1.78 5.43 -4.98 -0.03 1.75 16 4 C -0.14 -2.28 5.41 -104.47 -0.56 -2.84 16 5 C -0.08 -1.10 9.66 -39.60 -0.38 -1.48 16 6 C -0.18 -2.43 10.04 -39.56 -0.40 -2.83 16 7 C -0.08 -1.15 10.04 -39.60 -0.40 -1.55 16 8 C -0.22 -3.89 9.03 -39.43 -0.36 -4.25 16 9 C 0.17 3.35 6.65 -39.21 -0.26 3.09 16 10 O -0.28 -6.34 9.38 -19.42 -0.18 -6.53 16 11 C 0.10 2.43 4.57 37.16 0.17 2.60 16 12 C 0.05 1.25 1.55 -155.66 -0.24 1.01 16 13 C -0.48 -13.35 8.82 -34.44 -0.30 -13.66 16 14 H 0.06 1.78 7.82 -52.49 -0.41 1.36 16 15 C 0.07 1.88 5.23 -17.82 -0.09 1.78 16 16 N -0.89 -24.85 12.59 55.43 0.70 -24.15 16 17 Si 0.89 21.47 29.55 -169.99 -5.02 16.45 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 C -0.17 -3.86 9.88 -26.73 -0.26 -4.13 16 22 C -0.20 -4.38 9.88 -26.73 -0.26 -4.64 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 25 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.34 4.78 8.81 -39.29 -0.35 4.43 16 27 H 0.03 0.35 7.96 -51.93 -0.41 -0.06 16 28 H 0.08 1.38 7.99 -51.93 -0.41 0.96 16 29 H 0.12 1.30 8.01 -52.49 -0.42 0.88 16 30 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.13 2.37 6.33 -52.49 -0.33 2.04 16 33 H 0.03 0.64 7.38 -51.93 -0.38 0.26 16 34 H 0.08 1.97 6.84 -51.93 -0.36 1.62 16 35 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 36 H 0.06 1.37 8.06 -51.93 -0.42 0.95 16 37 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 38 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 39 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 329.05 15.07 4.96 4.96 Total: -1.00 -29.17 329.05 -9.14 -38.31 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -6.01 Total: 6.51 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: -2.74 Total: -24.07 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: -0.14 Total: -35.63 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -0.18 Total: -6.53 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.17 -9.14 -38.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249027.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.559 kcal (2) G-P(sol) polarization free energy of solvation -29.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds