Wall clock time and date at job start Mon Mar 30 2020 06:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 110.99950 * 2 1 4 4 C 1.50702 * 109.47274 * 180.02562 * 3 2 1 5 5 C 1.38165 * 120.02849 * 255.59374 * 4 3 2 6 6 C 1.38247 * 120.05494 * 179.97438 * 5 4 3 7 7 C 1.38291 * 120.11117 * 0.02562 * 6 5 4 8 8 C 1.38127 * 120.05450 * 359.95403 * 7 6 5 9 9 C 1.38717 * 120.02439 * 75.54924 * 4 3 2 10 10 O 1.35897 * 120.05814 * 0.04011 * 9 4 3 11 11 C 1.42904 * 117.00078 * 174.83871 * 10 9 4 12 12 C 1.52998 * 109.47041 * 184.85870 * 11 10 9 13 13 C 1.50700 * 115.55025 * 275.55109 * 12 11 10 14 14 H 1.08001 * 119.99828 * 114.64353 * 13 12 11 15 15 C 1.37872 * 120.00120 * 294.65120 * 13 12 11 16 16 N 1.31520 * 120.00340 * 352.53534 * 15 13 12 17 17 Si 1.86808 * 120.00060 * 172.54191 * 15 13 12 18 18 H 1.48495 * 109.46866 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.46875 * 119.99539 * 17 15 13 20 20 H 1.48504 * 109.46870 * 239.99196 * 17 15 13 21 21 C 1.52999 * 117.49838 * 129.84838 * 12 11 10 22 22 C 1.52996 * 117.49997 * 61.22382 * 12 11 10 23 23 H 1.08999 * 109.47102 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46673 * 299.99735 * 1 2 3 25 25 H 1.08997 * 109.47648 * 59.99747 * 1 2 3 26 26 H 1.00895 * 111.00547 * 123.95469 * 2 1 3 27 27 H 1.09000 * 109.47457 * 60.00326 * 3 2 1 28 28 H 1.09005 * 109.47147 * 300.00404 * 3 2 1 29 29 H 1.07995 * 119.97473 * 0.25757 * 5 4 3 30 30 H 1.07994 * 119.94536 * 179.97438 * 6 5 4 31 31 H 1.07996 * 119.97137 * 179.97438 * 7 6 5 32 32 H 1.08000 * 120.02530 * 179.97438 * 8 7 6 33 33 H 1.09002 * 109.46741 * 304.86339 * 11 10 9 34 34 H 1.09003 * 109.46747 * 64.85896 * 11 10 9 35 35 H 0.96990 * 120.00335 * 185.01096 * 16 15 13 36 36 H 1.09005 * 117.49729 * 359.97438 * 21 12 11 37 37 H 1.08997 * 117.49916 * 145.02046 * 21 12 11 38 38 H 1.08997 * 117.49780 * 214.97823 * 22 12 11 39 39 H 1.08995 * 117.49815 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5019 1.3313 -0.0006 5 6 4.2015 1.6102 1.1577 6 6 5.5835 1.5730 1.1579 7 6 6.2692 1.2572 -0.0008 8 6 5.5743 0.9772 -1.1613 9 6 4.1873 1.0134 -1.1640 10 8 3.5015 0.7386 -2.3046 11 6 4.2713 0.5309 -3.4905 12 6 3.3311 0.3564 -4.6848 13 6 2.8009 -1.0383 -4.8964 14 1 1.7453 -1.2373 -4.7854 15 6 3.6636 -2.0603 -5.2315 16 7 4.9211 -1.7946 -5.5103 17 14 3.0462 -3.8224 -5.2898 18 1 1.6041 -3.8535 -4.9369 19 1 3.2332 -4.3673 -6.6585 20 1 3.8107 -4.6471 -4.3199 21 6 3.6036 1.2052 -5.9283 22 6 2.4055 1.5242 -5.0317 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.8307 -0.5261 0.7813 27 1 1.6460 1.8948 0.8900 28 1 1.6459 1.8948 -0.8900 29 1 3.6683 1.8529 2.0649 30 1 6.1285 1.7917 2.0642 31 1 7.3488 1.2292 0.0017 32 1 6.1103 0.7311 -2.0661 33 1 4.9177 1.3922 -3.6595 34 1 4.8820 -0.3646 -3.3749 35 1 5.5100 -2.5020 -5.8163 36 1 4.4525 1.8882 -5.8953 37 1 3.3995 0.7549 -6.8996 38 1 1.4133 1.2837 -5.4133 39 1 2.4661 2.4166 -4.4089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088249027.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:05 Heat of formation + Delta-G solvation = -4.974455 kcal Electronic energy + Delta-G solvation = -19746.665232 eV Core-core repulsion = 16847.513374 eV Total energy + Delta-G solvation = -2899.151858 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.07119 -38.95002 -37.33472 -36.78181 -34.09230 -32.44601 -30.82941 -28.46572 -27.47628 -27.16914 -24.49232 -23.21202 -22.92045 -22.13986 -20.95977 -18.78198 -18.28735 -17.13307 -16.84139 -16.69822 -16.30322 -16.01420 -15.56568 -15.37620 -15.10730 -14.76894 -14.60193 -13.88500 -13.53361 -13.36703 -13.28706 -13.00369 -12.90063 -12.87013 -12.58022 -12.37883 -12.20785 -12.08623 -11.85131 -11.64662 -11.36075 -10.84667 -10.51704 -10.09966 -9.80724 -9.21669 -8.92564 -8.14464 -6.23031 0.40807 0.62741 1.37348 1.41107 1.52130 2.40754 2.48991 2.84779 3.10912 3.56734 3.59098 3.86206 3.96959 4.15544 4.26047 4.35218 4.39904 4.44722 4.51696 4.56041 4.62248 4.65621 4.72913 4.74569 4.84109 4.93195 4.99708 5.06655 5.15974 5.18689 5.49459 5.53838 5.55208 5.58984 5.64635 5.77908 6.03067 6.14836 6.36857 6.57316 6.76856 6.78691 7.42757 8.93819 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.006712 C = 0.006120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.419788 B = 4170.615778 C = 4573.856404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.706 5.706 3 C 0.121 3.879 4 C -0.144 4.144 5 C -0.072 4.072 6 C -0.165 4.165 7 C -0.081 4.081 8 C -0.238 4.238 9 C 0.130 3.870 10 O -0.305 6.305 11 C 0.125 3.875 12 C 0.016 3.984 13 C -0.502 4.502 14 H 0.048 0.952 15 C 0.027 3.973 16 N -0.908 5.908 17 Si 0.948 3.052 18 H -0.271 1.271 19 H -0.275 1.275 20 H -0.282 1.282 21 C -0.163 4.163 22 C -0.176 4.176 23 H 0.069 0.931 24 H 0.038 0.962 25 H 0.052 0.948 26 H 0.344 0.656 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.156 0.844 30 H 0.155 0.845 31 H 0.142 0.858 32 H 0.110 0.890 33 H 0.035 0.965 34 H 0.042 0.958 35 H 0.262 0.738 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.290 6.965 13.988 15.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.337 5.337 3 C -0.007 4.007 4 C -0.145 4.145 5 C -0.090 4.090 6 C -0.183 4.183 7 C -0.099 4.099 8 C -0.257 4.257 9 C 0.083 3.917 10 O -0.218 6.218 11 C 0.050 3.950 12 C 0.016 3.984 13 C -0.539 4.539 14 H 0.066 0.934 15 C -0.173 4.173 16 N -0.546 5.546 17 Si 0.774 3.226 18 H -0.195 1.195 19 H -0.201 1.201 20 H -0.208 1.208 21 C -0.200 4.200 22 C -0.213 4.213 23 H 0.088 0.912 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.162 0.838 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.173 0.827 30 H 0.172 0.828 31 H 0.160 0.840 32 H 0.128 0.872 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.299 6.774 13.249 14.937 hybrid contribution 0.049 -0.892 0.069 0.897 sum -1.250 5.882 13.319 14.613 Atomic orbital electron populations 1.22139 0.86754 1.02148 1.00366 1.60207 1.08576 1.14302 1.50650 1.20546 0.89610 0.89891 1.00664 1.19396 0.96023 1.07224 0.91848 1.21194 0.94545 0.96890 0.96414 1.21315 0.94228 1.03928 0.98826 1.21227 1.00738 0.96181 0.91752 1.21453 0.93452 1.09837 1.00979 1.19432 0.90916 0.93764 0.87544 1.86193 1.36314 1.83740 1.15523 1.22111 0.92905 0.97492 0.82483 1.18825 0.97327 0.91183 0.91095 1.20699 0.93411 0.92323 1.47509 0.93404 1.25615 0.94981 1.02220 0.94495 1.70043 1.05650 1.33907 1.44964 0.85650 0.78625 0.80582 0.77731 1.19516 1.20089 1.20786 1.22711 0.98469 1.03150 0.95714 1.22763 0.94709 0.99847 1.03962 0.91206 0.94330 0.92945 0.83831 0.92308 0.92384 0.82670 0.82756 0.83981 0.87176 0.94710 0.93989 0.92867 0.90328 0.90969 0.90193 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.89 10.70 127.69 1.37 2.25 16 2 N -0.71 -21.61 6.84 -541.22 -3.70 -25.31 16 3 C 0.12 3.55 5.43 85.56 0.46 4.01 16 4 C -0.14 -4.54 5.41 -19.77 -0.11 -4.65 16 5 C -0.07 -1.73 9.66 22.25 0.22 -1.51 16 6 C -0.17 -3.78 10.04 22.28 0.22 -3.56 16 7 C -0.08 -2.23 10.04 22.26 0.22 -2.01 16 8 C -0.24 -8.62 9.03 22.37 0.20 -8.42 16 9 C 0.13 5.11 6.65 22.51 0.15 5.26 16 10 O -0.31 -14.14 9.38 -92.39 -0.87 -15.01 16 11 C 0.13 6.16 4.57 71.98 0.33 6.48 16 12 C 0.02 0.83 1.55 -52.93 -0.08 0.75 16 13 C -0.50 -28.70 8.82 25.60 0.23 -28.48 16 14 H 0.05 2.79 7.82 -2.91 -0.02 2.77 16 15 C 0.03 1.52 5.23 84.65 0.44 1.96 16 16 N -0.91 -52.23 12.59 21.45 0.27 -51.96 16 17 Si 0.95 44.85 29.55 68.60 2.03 46.88 16 18 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 21 C -0.16 -7.65 9.88 30.59 0.30 -7.35 16 22 C -0.18 -7.88 9.88 30.59 0.30 -7.58 16 23 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 25 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.34 9.31 8.81 -89.70 -0.79 8.52 16 27 H 0.06 1.32 7.96 -2.39 -0.02 1.30 16 28 H 0.06 1.96 7.99 -2.38 -0.02 1.94 16 29 H 0.16 2.57 8.01 -2.91 -0.02 2.54 16 30 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 31 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 32 H 0.11 4.29 6.33 -2.91 -0.02 4.27 16 33 H 0.03 1.61 7.38 -2.39 -0.02 1.59 16 34 H 0.04 2.30 6.84 -2.39 -0.02 2.29 16 35 H 0.26 14.33 8.32 -92.72 -0.77 13.56 16 36 H 0.08 3.40 8.06 -2.38 -0.02 3.38 16 37 H 0.07 3.52 8.14 -2.39 -0.02 3.50 16 38 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 39 H 0.08 3.49 8.14 -2.39 -0.02 3.47 16 Total: -1.00 -64.79 329.05 2.22 -62.56 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 0.24 Total: 25.67 kcal Atomic # 6 Polarization: -47.09 SS G_CDS: 4.26 Total: -42.83 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -3.43 Total: -77.27 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.87 Total: -15.01 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -64.79 2.22 -62.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249027.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.587 kcal (2) G-P(sol) polarization free energy of solvation -64.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds