Wall clock time and date at job start Mon Mar 30 2020 06:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46897 * 111.00362 * 2 1 4 4 C 1.50695 * 109.47603 * 179.97438 * 3 2 1 5 5 C 1.38284 * 119.97385 * 270.30293 * 4 3 2 6 6 C 1.38254 * 120.10971 * 180.25292 * 5 4 3 7 7 C 1.38159 * 120.05372 * 359.44741 * 6 5 4 8 8 C 1.38716 * 119.94750 * 0.27424 * 7 6 5 9 9 O 1.35905 * 120.05684 * 179.97438 * 8 7 6 10 10 C 1.42892 * 116.99966 * 0.02562 * 9 8 7 11 11 C 1.53004 * 109.47198 * 179.97438 * 10 9 8 12 12 C 1.50700 * 115.54885 * 65.10866 * 11 10 9 13 13 H 1.07999 * 119.99894 * 266.11265 * 12 11 10 14 14 C 1.37875 * 119.99922 * 86.10634 * 12 11 10 15 15 N 1.31517 * 120.00041 * 353.70966 * 14 12 11 16 16 Si 1.86802 * 120.00063 * 173.70034 * 14 12 11 17 17 H 1.48501 * 109.46909 * 90.00439 * 16 14 12 18 18 H 1.48497 * 109.47354 * 210.00158 * 16 14 12 19 19 H 1.48500 * 109.47001 * 330.00523 * 16 14 12 20 20 C 1.52998 * 117.49759 * 279.43934 * 11 10 9 21 21 C 1.53003 * 117.49820 * 210.77994 * 11 10 9 22 22 C 1.38129 * 119.96875 * 90.00003 * 4 3 2 23 23 H 1.09002 * 109.47506 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47022 * 299.99349 * 1 2 3 25 25 H 1.09004 * 109.47250 * 59.99511 * 1 2 3 26 26 H 1.00896 * 111.00444 * 123.95977 * 2 1 3 27 27 H 1.09002 * 109.46536 * 59.99991 * 3 2 1 28 28 H 1.09000 * 109.47217 * 300.00683 * 3 2 1 29 29 H 1.07993 * 119.94715 * 359.97438 * 5 4 3 30 30 H 1.08001 * 119.96801 * 179.72200 * 6 5 4 31 31 H 1.08001 * 120.02985 * 180.30068 * 7 6 5 32 32 H 1.08998 * 109.47434 * 300.00155 * 10 9 8 33 33 H 1.09009 * 109.47211 * 59.99718 * 10 9 8 34 34 H 0.97001 * 119.99668 * 179.97438 * 15 14 12 35 35 H 1.09000 * 117.50166 * 359.97438 * 20 11 10 36 36 H 1.09007 * 117.49482 * 145.01792 * 20 11 10 37 37 H 1.08999 * 117.49605 * 214.97769 * 21 11 10 38 38 H 1.08998 * 117.49917 * 359.97438 * 21 11 10 39 39 H 1.07998 * 120.02791 * 0.05050 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5019 1.3312 0.0006 5 6 4.1918 1.3066 1.1988 6 6 5.5740 1.2750 1.2027 7 6 6.2690 1.2564 0.0088 8 6 5.5791 1.2752 -1.1945 9 8 6.2606 1.2574 -2.3702 10 6 7.6869 1.2189 -2.2928 11 6 8.2741 1.2031 -3.7055 12 6 8.0287 2.4436 -4.5252 13 1 7.1808 2.4910 -5.1924 14 6 8.8866 3.5182 -4.4234 15 7 9.8455 3.5110 -3.5233 16 14 8.6871 4.9841 -5.5639 17 1 7.7713 5.9740 -4.9420 18 1 10.0116 5.6136 -5.7973 19 1 8.1197 4.5300 -6.8589 20 6 8.3037 -0.1368 -4.4434 21 6 9.6028 0.4725 -3.9102 22 6 4.1921 1.3126 -1.1957 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8900 26 1 1.8306 -0.5262 0.7813 27 1 1.6459 1.8947 0.8900 28 1 1.6459 1.8948 -0.8899 29 1 3.6503 1.3167 2.1331 30 1 6.1107 1.2604 2.1398 31 1 7.3486 1.2268 0.0123 32 1 8.0458 2.0991 -1.7595 33 1 7.9977 0.3198 -1.7604 34 1 10.4493 4.2668 -3.4519 35 1 7.9051 -1.0073 -3.9222 36 1 8.1459 -0.1211 -5.5219 37 1 10.2991 0.8888 -4.6381 38 1 10.0587 0.0034 -3.0384 39 1 3.6527 1.3277 -2.1312 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088249046.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:07 Heat of formation + Delta-G solvation = 9.304187 kcal Electronic energy + Delta-G solvation = -19003.757281 eV Core-core repulsion = 16105.224591 eV Total energy + Delta-G solvation = -2898.532690 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.66315 -37.69342 -36.18146 -35.34548 -31.94512 -31.25262 -29.79551 -26.87613 -26.37240 -25.21181 -23.58998 -22.17690 -21.17371 -20.73841 -19.11955 -17.35891 -16.39956 -15.95175 -15.52138 -15.19496 -14.99825 -14.67775 -14.42642 -14.18371 -13.77474 -13.56329 -12.93095 -12.61418 -12.31944 -12.14170 -11.91139 -11.73731 -11.57839 -11.21709 -10.97336 -10.93668 -10.55319 -10.42288 -10.31205 -10.15702 -9.57713 -8.84502 -8.71594 -8.48921 -8.45003 -8.20328 -7.64830 -6.06555 -4.10538 1.58921 1.83206 3.30103 3.36705 3.41105 3.92598 3.97420 4.39822 4.41057 4.88663 5.02408 5.17171 5.23588 5.24424 5.29664 5.39572 5.40684 5.54282 5.61375 5.68056 5.84549 5.95517 6.02312 6.20415 6.30368 6.33729 6.52179 6.61919 6.70098 6.74986 6.78399 6.81630 6.83903 7.02906 7.18025 7.19971 7.36784 7.45002 7.87828 8.21729 8.42249 8.91144 9.55131 11.03004 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.022825 B = 0.004481 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.430311 B = 6246.522933 C = 6483.753464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.689 5.689 3 C 0.101 3.899 4 C -0.053 4.053 5 C -0.171 4.171 6 C -0.081 4.081 7 C -0.213 4.213 8 C 0.149 3.851 9 O -0.295 6.295 10 C 0.105 3.895 11 C 0.040 3.960 12 C -0.487 4.487 13 H 0.063 0.937 14 C 0.069 3.931 15 N -0.884 5.884 16 Si 0.892 3.108 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.272 1.272 20 C -0.205 4.205 21 C -0.146 4.146 22 C -0.139 4.139 23 H 0.067 0.933 24 H 0.019 0.981 25 H 0.065 0.935 26 H 0.343 0.657 27 H 0.038 0.962 28 H 0.081 0.919 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.128 0.872 32 H 0.068 0.932 33 H 0.030 0.970 34 H 0.260 0.740 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.665 -5.096 9.523 15.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.320 5.320 3 C -0.027 4.027 4 C -0.054 4.054 5 C -0.189 4.189 6 C -0.099 4.099 7 C -0.232 4.232 8 C 0.102 3.898 9 O -0.207 6.207 10 C 0.031 3.969 11 C 0.039 3.961 12 C -0.524 4.524 13 H 0.081 0.919 14 C -0.134 4.134 15 N -0.521 5.521 16 Si 0.719 3.281 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.242 4.242 21 C -0.183 4.183 22 C -0.159 4.159 23 H 0.086 0.914 24 H 0.038 0.962 25 H 0.084 0.916 26 H 0.160 0.840 27 H 0.056 0.944 28 H 0.100 0.900 29 H 0.130 0.870 30 H 0.136 0.864 31 H 0.146 0.854 32 H 0.086 0.914 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.082 0.918 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.529 -5.045 8.685 15.291 hybrid contribution 0.106 1.141 0.633 1.309 sum -11.423 -3.904 9.319 15.250 Atomic orbital electron populations 1.22209 0.87799 1.01863 1.00356 1.60396 1.07394 1.13868 1.50329 1.20881 0.90856 0.89786 1.01213 1.19371 0.94260 0.99146 0.92592 1.20721 0.94204 1.07193 0.96830 1.20815 0.93939 0.97896 0.97225 1.21374 1.00676 1.08771 0.92356 1.19249 0.91949 0.92724 0.85917 1.86199 1.22006 1.86306 1.26168 1.22623 0.75665 0.98840 0.99822 1.18720 0.95740 0.91112 0.90497 1.20398 1.11067 0.97451 1.23517 0.91933 1.24989 0.95071 0.98127 0.95184 1.69995 1.18016 1.31056 1.33016 0.86596 0.77368 0.82650 0.81465 1.20607 1.21181 1.19725 1.23008 1.03563 0.97856 0.99814 1.22530 0.91074 1.03333 1.01388 1.20241 0.91065 1.06217 0.98345 0.91406 0.96202 0.91597 0.83956 0.94408 0.90028 0.86979 0.86384 0.85449 0.91397 0.95207 0.93002 0.91510 0.90118 0.89488 0.91754 0.85413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.70 60.06 0.64 0.87 16 2 N -0.69 -7.50 6.84 -122.43 -0.84 -8.34 16 3 C 0.10 1.16 5.81 -4.98 -0.03 1.14 16 4 C -0.05 -0.76 5.39 -104.65 -0.56 -1.32 16 5 C -0.17 -2.29 9.70 -39.56 -0.38 -2.67 16 6 C -0.08 -1.17 10.04 -39.60 -0.40 -1.57 16 7 C -0.21 -3.71 9.04 -39.43 -0.36 -4.06 16 8 C 0.15 2.90 6.69 -39.22 -0.26 2.64 16 9 O -0.29 -6.69 10.06 -19.44 -0.20 -6.89 16 10 C 0.11 2.42 4.56 37.16 0.17 2.59 16 11 C 0.04 0.99 1.62 -155.66 -0.25 0.74 16 12 C -0.49 -13.46 8.77 -34.44 -0.30 -13.76 16 13 H 0.06 1.76 7.82 -52.49 -0.41 1.35 16 14 C 0.07 1.89 5.38 -17.82 -0.10 1.80 16 15 N -0.88 -24.76 12.88 55.43 0.71 -24.04 16 16 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 C -0.21 -4.56 9.96 -26.69 -0.27 -4.82 16 21 C -0.15 -3.38 9.37 -26.69 -0.25 -3.63 16 22 C -0.14 -2.39 9.64 -39.43 -0.38 -2.77 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.02 0.15 8.14 -51.93 -0.42 -0.28 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.34 3.41 8.81 -39.29 -0.35 3.07 16 27 H 0.04 0.38 8.09 -51.93 -0.42 -0.04 16 28 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 29 H 0.11 1.21 8.06 -52.49 -0.42 0.78 16 30 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 31 H 0.13 2.21 6.30 -52.49 -0.33 1.88 16 32 H 0.07 1.67 7.66 -51.93 -0.40 1.28 16 33 H 0.03 0.62 7.61 -51.92 -0.40 0.23 16 34 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 36 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 37 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 38 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.13 2.16 8.06 -52.49 -0.42 1.73 16 LS Contribution 331.17 15.07 4.99 4.99 Total: -1.00 -29.07 331.17 -9.16 -38.23 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -6.08 Total: 4.63 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: -2.73 Total: -24.83 kcal Atomic # 7 Polarization: -32.26 SS G_CDS: -0.12 Total: -32.38 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.20 Total: -6.89 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.07 -9.16 -38.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249046.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.536 kcal (2) G-P(sol) polarization free energy of solvation -29.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds