Wall clock time and date at job start Mon Mar 30 2020 06:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46897 * 111.00362 * 2 1 4 4 C 1.50695 * 109.47603 * 179.97438 * 3 2 1 5 5 C 1.38284 * 119.97385 * 270.30293 * 4 3 2 6 6 C 1.38254 * 120.10971 * 180.25292 * 5 4 3 7 7 C 1.38159 * 120.05372 * 359.44741 * 6 5 4 8 8 C 1.38716 * 119.94750 * 0.27424 * 7 6 5 9 9 O 1.35905 * 120.05684 * 179.97438 * 8 7 6 10 10 C 1.42892 * 116.99966 * 0.02562 * 9 8 7 11 11 C 1.53004 * 109.47198 * 179.97438 * 10 9 8 12 12 C 1.50700 * 115.54885 * 65.10866 * 11 10 9 13 13 H 1.07999 * 119.99894 * 266.11265 * 12 11 10 14 14 C 1.37875 * 119.99922 * 86.10634 * 12 11 10 15 15 N 1.31517 * 120.00041 * 353.70966 * 14 12 11 16 16 Si 1.86802 * 120.00063 * 173.70034 * 14 12 11 17 17 H 1.48501 * 109.46909 * 90.00439 * 16 14 12 18 18 H 1.48497 * 109.47354 * 210.00158 * 16 14 12 19 19 H 1.48500 * 109.47001 * 330.00523 * 16 14 12 20 20 C 1.52998 * 117.49759 * 279.43934 * 11 10 9 21 21 C 1.53003 * 117.49820 * 210.77994 * 11 10 9 22 22 C 1.38129 * 119.96875 * 90.00003 * 4 3 2 23 23 H 1.09002 * 109.47506 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47022 * 299.99349 * 1 2 3 25 25 H 1.09004 * 109.47250 * 59.99511 * 1 2 3 26 26 H 1.00896 * 111.00444 * 123.95977 * 2 1 3 27 27 H 1.09002 * 109.46536 * 59.99991 * 3 2 1 28 28 H 1.09000 * 109.47217 * 300.00683 * 3 2 1 29 29 H 1.07993 * 119.94715 * 359.97438 * 5 4 3 30 30 H 1.08001 * 119.96801 * 179.72200 * 6 5 4 31 31 H 1.08001 * 120.02985 * 180.30068 * 7 6 5 32 32 H 1.08998 * 109.47434 * 300.00155 * 10 9 8 33 33 H 1.09009 * 109.47211 * 59.99718 * 10 9 8 34 34 H 0.97001 * 119.99668 * 179.97438 * 15 14 12 35 35 H 1.09000 * 117.50166 * 359.97438 * 20 11 10 36 36 H 1.09007 * 117.49482 * 145.01792 * 20 11 10 37 37 H 1.08999 * 117.49605 * 214.97769 * 21 11 10 38 38 H 1.08998 * 117.49917 * 359.97438 * 21 11 10 39 39 H 1.07998 * 120.02791 * 0.05050 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5019 1.3312 0.0006 5 6 4.1918 1.3066 1.1988 6 6 5.5740 1.2750 1.2027 7 6 6.2690 1.2564 0.0088 8 6 5.5791 1.2752 -1.1945 9 8 6.2606 1.2574 -2.3702 10 6 7.6869 1.2189 -2.2928 11 6 8.2741 1.2031 -3.7055 12 6 8.0287 2.4436 -4.5252 13 1 7.1808 2.4910 -5.1924 14 6 8.8866 3.5182 -4.4234 15 7 9.8455 3.5110 -3.5233 16 14 8.6871 4.9841 -5.5639 17 1 7.7713 5.9740 -4.9420 18 1 10.0116 5.6136 -5.7973 19 1 8.1197 4.5300 -6.8589 20 6 8.3037 -0.1368 -4.4434 21 6 9.6028 0.4725 -3.9102 22 6 4.1921 1.3126 -1.1957 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8900 26 1 1.8306 -0.5262 0.7813 27 1 1.6459 1.8947 0.8900 28 1 1.6459 1.8948 -0.8899 29 1 3.6503 1.3167 2.1331 30 1 6.1107 1.2604 2.1398 31 1 7.3486 1.2268 0.0123 32 1 8.0458 2.0991 -1.7595 33 1 7.9977 0.3198 -1.7604 34 1 10.4493 4.2668 -3.4519 35 1 7.9051 -1.0073 -3.9222 36 1 8.1459 -0.1211 -5.5219 37 1 10.2991 0.8888 -4.6381 38 1 10.0587 0.0034 -3.0384 39 1 3.6527 1.3277 -2.1312 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088249046.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:07 Heat of formation + Delta-G solvation = -7.745997 kcal Electronic energy + Delta-G solvation = -19004.496632 eV Core-core repulsion = 16105.224591 eV Total energy + Delta-G solvation = -2899.272041 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.04113 -39.15123 -37.73703 -36.47136 -34.02878 -32.36620 -31.10616 -28.41350 -27.66516 -27.08113 -24.47478 -23.44040 -22.94937 -22.08798 -20.96800 -18.71039 -18.25224 -17.03165 -16.85795 -16.78579 -16.51478 -16.32338 -15.60786 -15.48843 -15.00056 -14.78208 -14.56962 -14.02175 -13.62654 -13.40780 -13.29849 -12.98926 -12.88844 -12.77697 -12.64874 -12.41118 -12.33374 -12.10932 -11.84400 -11.73411 -11.43485 -10.79289 -10.49137 -10.08957 -9.82783 -9.37424 -9.02100 -8.15322 -6.25185 0.36575 0.57263 1.39176 1.40449 1.50778 2.38136 2.44212 2.79440 3.13818 3.48556 3.52895 3.85036 3.94963 4.14816 4.18032 4.27788 4.40683 4.41345 4.44855 4.54966 4.57201 4.64373 4.67291 4.71732 4.78289 4.94175 4.96782 5.07114 5.13580 5.17770 5.45343 5.50001 5.57501 5.58254 5.63083 5.73617 5.91637 6.04791 6.35906 6.46126 6.70209 6.78327 7.42683 8.93499 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.022825 B = 0.004481 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.430311 B = 6246.522933 C = 6483.753464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.706 5.706 3 C 0.105 3.895 4 C -0.047 4.047 5 C -0.156 4.156 6 C -0.078 4.078 7 C -0.227 4.227 8 C 0.109 3.891 9 O -0.323 6.323 10 C 0.123 3.877 11 C 0.005 3.995 12 C -0.507 4.507 13 H 0.046 0.954 14 C 0.027 3.973 15 N -0.906 5.906 16 Si 0.949 3.051 17 H -0.279 1.279 18 H -0.278 1.278 19 H -0.270 1.270 20 C -0.186 4.186 21 C -0.141 4.141 22 C -0.155 4.155 23 H 0.077 0.923 24 H 0.034 0.966 25 H 0.062 0.938 26 H 0.349 0.651 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.152 0.848 30 H 0.150 0.850 31 H 0.119 0.881 32 H 0.040 0.960 33 H 0.047 0.953 34 H 0.262 0.738 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.167 -5.403 11.306 18.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.337 5.337 3 C -0.023 4.023 4 C -0.048 4.048 5 C -0.174 4.174 6 C -0.095 4.095 7 C -0.246 4.246 8 C 0.063 3.937 9 O -0.237 6.237 10 C 0.048 3.952 11 C 0.004 3.996 12 C -0.545 4.545 13 H 0.064 0.936 14 C -0.173 4.173 15 N -0.543 5.543 16 Si 0.774 3.226 17 H -0.205 1.205 18 H -0.203 1.203 19 H -0.194 1.194 20 C -0.223 4.223 21 C -0.179 4.179 22 C -0.174 4.174 23 H 0.096 0.904 24 H 0.052 0.948 25 H 0.081 0.919 26 H 0.167 0.833 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.170 0.830 30 H 0.168 0.832 31 H 0.137 0.863 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.047 -5.363 10.476 17.571 hybrid contribution 0.447 1.203 0.176 1.296 sum -12.600 -4.159 10.652 17.015 Atomic orbital electron populations 1.22245 0.86265 1.02735 1.00860 1.60353 1.08931 1.13438 1.51005 1.20852 0.88765 0.90586 1.02128 1.19715 0.95891 0.97359 0.91799 1.21179 0.93909 1.04361 0.97966 1.21206 0.94715 0.96380 0.97236 1.21460 1.00532 1.09689 0.92939 1.19601 0.92772 0.95670 0.85637 1.86119 1.21510 1.87634 1.28422 1.22219 0.76376 0.98225 0.98353 1.18876 0.97498 0.91502 0.91689 1.20599 1.10778 0.99192 1.23907 0.93610 1.25636 0.94870 1.00395 0.96423 1.70078 1.18530 1.31766 1.33962 0.85701 0.77521 0.79616 0.79714 1.20516 1.20297 1.19426 1.23001 1.02307 0.97194 0.99761 1.22456 0.90652 1.03128 1.01631 1.20382 0.90352 1.07240 0.99461 0.90415 0.94779 0.91937 0.83308 0.92089 0.90525 0.83047 0.83191 0.86260 0.94202 0.93540 0.92918 0.89295 0.90187 0.91312 0.89966 0.86322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.70 127.69 1.37 1.77 16 2 N -0.71 -13.62 6.84 -541.24 -3.70 -17.32 16 3 C 0.11 2.15 5.81 85.56 0.50 2.65 16 4 C -0.05 -1.25 5.39 -19.88 -0.11 -1.36 16 5 C -0.16 -3.64 9.70 22.28 0.22 -3.42 16 6 C -0.08 -2.06 10.04 22.25 0.22 -1.83 16 7 C -0.23 -7.91 9.04 22.37 0.20 -7.71 16 8 C 0.11 4.35 6.69 22.51 0.15 4.50 16 9 O -0.32 -15.31 10.06 -92.48 -0.93 -16.25 16 10 C 0.12 5.87 4.56 71.98 0.33 6.20 16 11 C 0.00 0.24 1.62 -52.93 -0.09 0.16 16 12 C -0.51 -28.90 8.77 25.60 0.22 -28.68 16 13 H 0.05 2.68 7.82 -2.91 -0.02 2.65 16 14 C 0.03 1.52 5.38 84.65 0.46 1.98 16 15 N -0.91 -51.74 12.88 21.45 0.28 -51.46 16 16 Si 0.95 44.36 29.54 68.60 2.03 46.38 16 17 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 20 C -0.19 -8.23 9.96 30.62 0.30 -7.92 16 21 C -0.14 -6.60 9.37 30.62 0.29 -6.31 16 22 C -0.16 -5.37 9.64 22.37 0.22 -5.16 16 23 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.03 0.40 8.14 -2.38 -0.02 0.38 16 25 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.35 5.90 8.81 -89.70 -0.79 5.11 16 27 H 0.06 0.99 8.09 -2.39 -0.02 0.97 16 28 H 0.08 1.65 8.09 -2.39 -0.02 1.63 16 29 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 30 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 31 H 0.12 4.24 6.30 -2.91 -0.02 4.22 16 32 H 0.04 2.07 7.66 -2.39 -0.02 2.05 16 33 H 0.05 1.99 7.61 -2.38 -0.02 1.97 16 34 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 35 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 36 H 0.08 3.51 8.14 -2.38 -0.02 3.49 16 37 H 0.07 3.43 8.14 -2.39 -0.02 3.41 16 38 H 0.08 3.48 8.14 -2.39 -0.02 3.46 16 39 H 0.12 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -63.99 331.17 2.18 -61.81 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.24 Total: 21.97 kcal Atomic # 6 Polarization: -49.42 SS G_CDS: 4.28 Total: -45.14 kcal Atomic # 7 Polarization: -65.35 SS G_CDS: -3.43 Total: -68.78 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.93 Total: -16.25 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -63.99 2.18 -61.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249046.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.064 kcal (2) G-P(sol) polarization free energy of solvation -63.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds