Wall clock time and date at job start Mon Mar 30 2020 06:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99903 * 2 1 4 4 C 1.50698 * 109.47022 * 179.97438 * 3 2 1 5 5 C 1.38311 * 119.96282 * 270.27044 * 4 3 2 6 6 C 1.38264 * 120.14360 * 180.27828 * 5 4 3 7 7 C 1.38126 * 120.07861 * 359.45243 * 6 5 4 8 8 C 1.38885 * 119.92353 * 0.27597 * 7 6 5 9 9 N 1.39673 * 120.07340 * 179.97438 * 8 7 6 10 10 C 1.46503 * 120.00122 * 0.02562 * 9 8 7 11 11 C 1.52997 * 109.47123 * 180.72734 * 10 9 8 12 12 C 1.50697 * 115.54976 * 65.12125 * 11 10 9 13 13 H 1.08002 * 120.00247 * 265.35200 * 12 11 10 14 14 C 1.37883 * 120.00145 * 85.35999 * 12 11 10 15 15 N 1.31509 * 119.99725 * 353.39091 * 14 12 11 16 16 Si 1.86798 * 120.00192 * 173.38621 * 14 12 11 17 17 H 1.48504 * 109.47237 * 59.99861 * 16 14 12 18 18 H 1.48498 * 109.47349 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47134 * 299.99914 * 16 14 12 20 20 C 1.52999 * 117.49966 * 279.44986 * 11 10 9 21 21 C 1.52999 * 117.49776 * 210.78908 * 11 10 9 22 22 C 1.38081 * 119.96132 * 90.00462 * 4 3 2 23 23 H 1.08999 * 109.47169 * 299.99837 * 1 2 3 24 24 H 1.08995 * 109.47368 * 60.00199 * 1 2 3 25 25 H 1.09005 * 109.47103 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46659 * 59.99755 * 3 2 1 27 27 H 1.09004 * 109.47240 * 300.00141 * 3 2 1 28 28 H 1.07997 * 119.92594 * 0.02830 * 5 4 3 29 29 H 1.08006 * 119.95478 * 179.72658 * 6 5 4 30 30 H 1.07997 * 120.03399 * 180.29419 * 7 6 5 31 31 H 0.97003 * 120.00090 * 179.97438 * 9 8 7 32 32 H 1.09004 * 109.46653 * 300.72359 * 10 9 8 33 33 H 1.09001 * 109.47221 * 60.72235 * 10 9 8 34 34 H 0.97001 * 120.00050 * 185.06476 * 15 14 12 35 35 H 1.09002 * 117.49602 * 0.02562 * 20 11 10 36 36 H 1.09005 * 117.50027 * 145.02006 * 20 11 10 37 37 H 1.08997 * 117.50162 * 214.97942 * 21 11 10 38 38 H 1.08999 * 117.49860 * 359.97438 * 21 11 10 39 39 H 1.08004 * 120.04073 * 0.02562 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2001 1.1265 1.1992 6 6 5.5789 1.0231 1.2041 7 6 6.2733 0.9680 0.0114 8 6 5.5854 1.0223 -1.1939 9 7 6.2845 0.9673 -2.4019 10 6 7.7449 0.8517 -2.3984 11 6 8.2581 0.8298 -3.8396 12 6 8.0366 2.0951 -4.6277 13 1 7.1658 2.1925 -5.2591 14 6 8.9456 3.1283 -4.5427 15 7 9.9346 3.0646 -3.6783 16 14 8.7723 4.6187 -5.6555 17 1 7.4621 5.2722 -5.4072 18 1 9.8675 5.5799 -5.3697 19 1 8.8498 4.1884 -7.0747 20 6 8.1803 -0.4971 -4.5972 21 6 9.5348 0.0356 -4.1229 22 6 4.2004 1.1319 -1.1954 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 3.6593 1.1646 2.1332 29 1 6.1132 0.9810 2.1419 30 1 7.3499 0.8824 0.0161 31 1 5.8029 1.0050 -3.2431 32 1 8.1755 1.7036 -1.8722 33 1 8.0352 -0.0707 -1.8953 34 1 10.5306 3.8217 -3.5665 35 1 7.7631 -1.3545 -4.0690 36 1 7.9692 -0.4550 -5.6658 37 1 10.2142 0.4279 -4.8795 38 1 10.0092 -0.4711 -3.2824 39 1 3.6625 1.1749 -2.1309 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088249752.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:32 Heat of formation + Delta-G solvation = 0.417176 kcal Electronic energy + Delta-G solvation = -18940.432277 eV Core-core repulsion = 16041.514217 eV Total energy + Delta-G solvation = -2898.918059 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.23419 -37.71431 -36.82942 -34.18853 -31.99662 -31.41796 -29.20318 -27.14190 -25.81859 -25.35669 -24.62505 -22.00107 -21.17606 -20.27698 -19.17640 -16.82944 -16.40482 -16.27544 -15.86141 -15.43407 -14.94174 -14.65965 -14.54016 -13.93302 -13.44778 -13.34335 -12.95732 -12.69855 -12.35210 -12.17077 -11.90977 -11.57984 -11.40276 -11.06670 -10.99606 -10.94967 -10.55631 -10.51409 -10.26842 -9.74455 -9.59088 -9.52405 -8.86838 -8.50816 -8.45911 -8.22580 -6.70847 -6.10055 -4.17652 1.72395 2.09206 3.26242 3.31628 3.33822 3.81366 4.18701 4.35147 4.47543 4.99259 5.07992 5.18393 5.23382 5.26500 5.30073 5.37613 5.48081 5.52309 5.62649 5.82230 5.95651 6.03110 6.22809 6.31768 6.35474 6.43807 6.54538 6.67686 6.79243 6.83975 6.93097 7.02680 7.04709 7.09837 7.33883 7.38158 7.46839 7.79802 8.10795 8.33310 8.53798 8.82661 9.48859 10.97913 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.022347 B = 0.004417 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.662183 B = 6337.701562 C = 6566.853476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.383 6.383 3 C 0.105 3.895 4 C -0.048 4.048 5 C -0.180 4.180 6 C -0.073 4.073 7 C -0.198 4.198 8 C 0.232 3.768 9 N -0.720 5.720 10 C 0.166 3.834 11 C 0.030 3.970 12 C -0.498 4.498 13 H 0.058 0.942 14 C 0.075 3.925 15 N -0.877 5.877 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.210 4.210 21 C -0.149 4.149 22 C -0.188 4.188 23 H 0.039 0.961 24 H 0.040 0.960 25 H 0.084 0.916 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.400 0.600 32 H 0.066 0.934 33 H 0.028 0.972 34 H 0.262 0.738 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.249 -3.644 7.498 14.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.029 3.971 4 C -0.049 4.049 5 C -0.200 4.200 6 C -0.092 4.092 7 C -0.221 4.221 8 C 0.123 3.877 9 N -0.343 5.343 10 C 0.042 3.958 11 C 0.030 3.970 12 C -0.536 4.536 13 H 0.076 0.924 14 C -0.129 4.129 15 N -0.513 5.513 16 Si 0.718 3.282 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.248 4.248 21 C -0.187 4.187 22 C -0.211 4.211 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.102 0.898 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.128 0.872 29 H 0.133 0.867 30 H 0.139 0.861 31 H 0.234 0.766 32 H 0.085 0.915 33 H 0.046 0.954 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.670 -3.741 7.497 14.366 hybrid contribution -0.309 1.158 -0.890 1.493 sum -11.979 -2.583 6.607 13.922 Atomic orbital electron populations 1.22732 0.81544 1.02582 0.99785 1.88003 1.19105 1.27803 1.95345 1.21359 0.90635 0.84702 1.00394 1.19115 0.92789 0.99800 0.93228 1.20546 0.94158 1.08762 0.96579 1.20773 0.93846 0.97494 0.97116 1.20709 0.99923 1.10281 0.91196 1.17931 0.90784 0.91717 0.87222 1.44905 1.07019 1.77979 1.04400 1.20990 0.78183 0.98450 0.98176 1.18974 0.97141 0.90079 0.90844 1.20303 1.07912 0.98717 1.26661 0.92356 1.24960 0.94624 0.98162 0.95187 1.69953 1.16772 1.30679 1.33910 0.86693 0.77724 0.82451 0.81342 1.20244 1.21244 1.20201 1.23018 1.03151 0.98792 0.99821 1.22493 0.90734 1.03706 1.01767 1.20369 0.92312 1.10834 0.97572 0.94269 0.94169 0.89774 0.92740 0.92693 0.87210 0.86672 0.86126 0.76560 0.91534 0.95359 0.92828 0.91609 0.90428 0.89869 0.91738 0.86662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -5.17 10.69 -35.23 -0.38 -5.54 16 3 C 0.11 1.33 6.06 36.00 0.22 1.55 16 4 C -0.05 -0.74 5.51 -104.65 -0.58 -1.32 16 5 C -0.18 -2.67 9.70 -39.55 -0.38 -3.05 16 6 C -0.07 -1.13 10.04 -39.61 -0.40 -1.52 16 7 C -0.20 -3.48 9.31 -39.38 -0.37 -3.84 16 8 C 0.23 4.28 6.65 -83.79 -0.56 3.72 16 9 N -0.72 -14.21 5.65 -58.63 -0.33 -14.54 16 10 C 0.17 3.60 4.74 -4.04 -0.02 3.58 16 11 C 0.03 0.71 1.37 -155.66 -0.21 0.50 16 12 C -0.50 -12.93 8.66 -34.44 -0.30 -13.23 16 13 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 14 C 0.07 1.98 5.39 -17.82 -0.10 1.88 16 15 N -0.88 -24.06 12.92 55.43 0.72 -23.34 16 16 Si 0.89 20.69 29.55 -169.99 -5.02 15.67 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 20 C -0.21 -4.43 9.96 -26.69 -0.27 -4.69 16 21 C -0.15 -3.37 9.42 -26.69 -0.25 -3.62 16 22 C -0.19 -3.15 9.55 -39.38 -0.38 -3.53 16 23 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.59 8.09 -51.93 -0.42 0.17 16 27 H 0.05 0.64 8.09 -51.93 -0.42 0.22 16 28 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 29 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 30 H 0.12 2.13 6.73 -52.49 -0.35 1.78 16 31 H 0.40 7.78 8.41 -40.82 -0.34 7.43 16 32 H 0.07 1.61 7.91 -51.93 -0.41 1.20 16 33 H 0.03 0.59 7.93 -51.93 -0.41 0.17 16 34 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 36 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 37 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 38 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.12 1.81 8.06 -52.48 -0.42 1.38 16 LS Contribution 331.95 15.07 5.00 5.00 Total: -1.00 -27.93 331.95 -8.62 -36.55 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -6.13 Total: 8.39 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -2.47 Total: -22.20 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.39 Total: -37.88 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.38 Total: -5.54 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.93 -8.62 -36.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249752.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.965 kcal (2) G-P(sol) polarization free energy of solvation -27.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds