Wall clock time and date at job start Mon Mar 30 2020 06:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99903 * 2 1 4 4 C 1.50698 * 109.47022 * 179.97438 * 3 2 1 5 5 C 1.38311 * 119.96282 * 270.27044 * 4 3 2 6 6 C 1.38264 * 120.14360 * 180.27828 * 5 4 3 7 7 C 1.38126 * 120.07861 * 359.45243 * 6 5 4 8 8 C 1.38885 * 119.92353 * 0.27597 * 7 6 5 9 9 N 1.39673 * 120.07340 * 179.97438 * 8 7 6 10 10 C 1.46503 * 120.00122 * 0.02562 * 9 8 7 11 11 C 1.52997 * 109.47123 * 180.72734 * 10 9 8 12 12 C 1.50697 * 115.54976 * 65.12125 * 11 10 9 13 13 H 1.08002 * 120.00247 * 265.35200 * 12 11 10 14 14 C 1.37883 * 120.00145 * 85.35999 * 12 11 10 15 15 N 1.31509 * 119.99725 * 353.39091 * 14 12 11 16 16 Si 1.86798 * 120.00192 * 173.38621 * 14 12 11 17 17 H 1.48504 * 109.47237 * 59.99861 * 16 14 12 18 18 H 1.48498 * 109.47349 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47134 * 299.99914 * 16 14 12 20 20 C 1.52999 * 117.49966 * 279.44986 * 11 10 9 21 21 C 1.52999 * 117.49776 * 210.78908 * 11 10 9 22 22 C 1.38081 * 119.96132 * 90.00462 * 4 3 2 23 23 H 1.08999 * 109.47169 * 299.99837 * 1 2 3 24 24 H 1.08995 * 109.47368 * 60.00199 * 1 2 3 25 25 H 1.09005 * 109.47103 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46659 * 59.99755 * 3 2 1 27 27 H 1.09004 * 109.47240 * 300.00141 * 3 2 1 28 28 H 1.07997 * 119.92594 * 0.02830 * 5 4 3 29 29 H 1.08006 * 119.95478 * 179.72658 * 6 5 4 30 30 H 1.07997 * 120.03399 * 180.29419 * 7 6 5 31 31 H 0.97003 * 120.00090 * 179.97438 * 9 8 7 32 32 H 1.09004 * 109.46653 * 300.72359 * 10 9 8 33 33 H 1.09001 * 109.47221 * 60.72235 * 10 9 8 34 34 H 0.97001 * 120.00050 * 185.06476 * 15 14 12 35 35 H 1.09002 * 117.49602 * 0.02562 * 20 11 10 36 36 H 1.09005 * 117.50027 * 145.02006 * 20 11 10 37 37 H 1.08997 * 117.50162 * 214.97942 * 21 11 10 38 38 H 1.08999 * 117.49860 * 359.97438 * 21 11 10 39 39 H 1.08004 * 120.04073 * 0.02562 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2001 1.1265 1.1992 6 6 5.5789 1.0231 1.2041 7 6 6.2733 0.9680 0.0114 8 6 5.5854 1.0223 -1.1939 9 7 6.2845 0.9673 -2.4019 10 6 7.7449 0.8517 -2.3984 11 6 8.2581 0.8298 -3.8396 12 6 8.0366 2.0951 -4.6277 13 1 7.1658 2.1925 -5.2591 14 6 8.9456 3.1283 -4.5427 15 7 9.9346 3.0646 -3.6783 16 14 8.7723 4.6187 -5.6555 17 1 7.4621 5.2722 -5.4072 18 1 9.8675 5.5799 -5.3697 19 1 8.8498 4.1884 -7.0747 20 6 8.1803 -0.4971 -4.5972 21 6 9.5348 0.0356 -4.1229 22 6 4.2004 1.1319 -1.1954 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 3.6593 1.1646 2.1332 29 1 6.1132 0.9810 2.1419 30 1 7.3499 0.8824 0.0161 31 1 5.8029 1.0050 -3.2431 32 1 8.1755 1.7036 -1.8722 33 1 8.0352 -0.0707 -1.8953 34 1 10.5306 3.8217 -3.5665 35 1 7.7631 -1.3545 -4.0690 36 1 7.9692 -0.4550 -5.6658 37 1 10.2142 0.4279 -4.8795 38 1 10.0092 -0.4711 -3.2824 39 1 3.6625 1.1749 -2.1309 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088249752.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:32 Heat of formation + Delta-G solvation = -14.589416 kcal Electronic energy + Delta-G solvation = -18941.083011 eV Core-core repulsion = 16041.514217 eV Total energy + Delta-G solvation = -2899.568794 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.49216 -38.94249 -38.29550 -35.64180 -33.99495 -32.58935 -30.59567 -28.05045 -27.69937 -26.67465 -25.94539 -23.30131 -22.89201 -21.65106 -20.93551 -18.32386 -17.86439 -17.26877 -17.13011 -16.64736 -16.55792 -16.16366 -15.72965 -15.60515 -14.96125 -14.55761 -14.43772 -14.30633 -13.59497 -13.35577 -13.30096 -13.05090 -12.93438 -12.82357 -12.41688 -12.31452 -12.21335 -12.05485 -11.71346 -11.42173 -11.05140 -10.66413 -10.59764 -10.45325 -10.04027 -9.70758 -8.16177 -8.09876 -6.23405 0.47991 0.81926 1.40653 1.41955 1.48361 2.40461 2.67812 2.80736 3.16606 3.34193 3.53653 3.97193 4.05786 4.24000 4.29831 4.38840 4.49209 4.54383 4.55660 4.60760 4.62179 4.65557 4.70863 4.80689 4.89132 4.89605 4.97360 5.09427 5.19420 5.25147 5.52085 5.60584 5.61316 5.68358 5.75855 5.79910 6.09157 6.27156 6.35753 6.63086 6.81121 7.05793 7.45010 8.95638 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.022347 B = 0.004417 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.662183 B = 6337.701562 C = 6566.853476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.412 6.412 3 C 0.106 3.894 4 C -0.054 4.054 5 C -0.175 4.175 6 C -0.073 4.073 7 C -0.217 4.217 8 C 0.207 3.793 9 N -0.726 5.726 10 C 0.186 3.814 11 C 0.008 3.992 12 C -0.507 4.507 13 H 0.053 0.947 14 C 0.029 3.971 15 N -0.904 5.904 16 Si 0.946 3.054 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.272 1.272 20 C -0.184 4.184 21 C -0.155 4.155 22 C -0.196 4.196 23 H 0.055 0.945 24 H 0.049 0.951 25 H 0.094 0.906 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.139 0.861 29 H 0.142 0.858 30 H 0.110 0.890 31 H 0.399 0.601 32 H 0.032 0.968 33 H 0.035 0.965 34 H 0.260 0.740 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.252 -3.830 8.365 16.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.332 6.332 3 C 0.030 3.970 4 C -0.055 4.055 5 C -0.195 4.195 6 C -0.092 4.092 7 C -0.240 4.240 8 C 0.101 3.899 9 N -0.352 5.352 10 C 0.062 3.938 11 C 0.007 3.993 12 C -0.545 4.545 13 H 0.071 0.929 14 C -0.172 4.172 15 N -0.542 5.542 16 Si 0.772 3.228 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.221 4.221 21 C -0.194 4.194 22 C -0.219 4.219 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.113 0.887 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.156 0.844 29 H 0.160 0.840 30 H 0.128 0.872 31 H 0.233 0.767 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.706 -3.933 8.378 16.538 hybrid contribution 0.202 1.180 -1.077 1.611 sum -13.504 -2.753 7.300 15.596 Atomic orbital electron populations 1.22948 0.79407 1.03781 1.01046 1.87946 1.21472 1.28133 1.95614 1.21384 0.88727 0.84913 1.01941 1.19524 0.94660 0.98483 0.92792 1.20951 0.94060 1.06872 0.97646 1.21102 0.94418 0.96338 0.97319 1.20833 0.99723 1.11436 0.92054 1.18176 0.91599 0.93207 0.86915 1.44716 1.05992 1.79533 1.04958 1.20556 0.79401 0.97208 0.96665 1.19049 0.98129 0.90352 0.91785 1.20577 1.07511 0.99866 1.26518 0.92855 1.25611 0.94593 1.00651 0.96307 1.70060 1.17548 1.31262 1.35291 0.85806 0.77506 0.79622 0.79823 1.20041 1.21215 1.19753 1.22986 1.01228 0.98047 0.99846 1.22428 0.90895 1.04229 1.01809 1.20546 0.91727 1.10922 0.98704 0.92608 0.93268 0.88721 0.90486 0.91885 0.84357 0.83982 0.87172 0.76716 0.94981 0.94687 0.93111 0.89479 0.90226 0.91990 0.90635 0.86148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 11.01 113.37 1.25 1.62 16 2 O -0.41 -10.08 10.69 -148.98 -1.59 -11.67 16 3 C 0.11 2.40 6.06 71.24 0.43 2.84 16 4 C -0.05 -1.55 5.51 -19.89 -0.11 -1.65 16 5 C -0.18 -4.73 9.70 22.29 0.22 -4.52 16 6 C -0.07 -2.12 10.04 22.25 0.22 -1.90 16 7 C -0.22 -7.64 9.31 22.40 0.21 -7.43 16 8 C 0.21 7.67 6.65 38.21 0.25 7.92 16 9 N -0.73 -29.16 5.65 -339.41 -1.92 -31.08 16 10 C 0.19 8.28 4.74 86.38 0.41 8.69 16 11 C 0.01 0.36 1.37 -52.93 -0.07 0.28 16 12 C -0.51 -26.63 8.66 25.60 0.22 -26.41 16 13 H 0.05 2.78 7.82 -2.91 -0.02 2.76 16 14 C 0.03 1.57 5.39 84.66 0.46 2.03 16 15 N -0.90 -50.69 12.92 21.45 0.28 -50.41 16 16 Si 0.95 42.88 29.55 68.60 2.03 44.91 16 17 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 18 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 20 C -0.18 -7.58 9.96 30.62 0.30 -7.28 16 21 C -0.16 -7.09 9.42 30.62 0.29 -6.80 16 22 C -0.20 -6.46 9.55 22.40 0.21 -6.24 16 23 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 26 H 0.08 1.38 8.09 -2.38 -0.02 1.36 16 27 H 0.06 1.31 8.09 -2.38 -0.02 1.29 16 28 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 29 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 30 H 0.11 4.01 6.73 -2.91 -0.02 3.99 16 31 H 0.40 15.75 8.41 -92.71 -0.78 14.97 16 32 H 0.03 1.62 7.91 -2.38 -0.02 1.60 16 33 H 0.04 1.47 7.93 -2.39 -0.02 1.46 16 34 H 0.26 14.07 8.32 -92.71 -0.77 13.30 16 35 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 36 H 0.08 3.24 8.14 -2.38 -0.02 3.22 16 37 H 0.06 3.06 8.14 -2.39 -0.02 3.04 16 38 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 39 H 0.12 3.72 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -59.76 331.95 3.34 -56.42 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: 0.25 Total: 30.68 kcal Atomic # 6 Polarization: -43.14 SS G_CDS: 4.29 Total: -38.85 kcal Atomic # 7 Polarization: -79.85 SS G_CDS: -1.64 Total: -81.49 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -1.59 Total: -11.67 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -59.76 3.34 -56.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249752.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.834 kcal (2) G-P(sol) polarization free energy of solvation -59.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds