Wall clock time and date at job start Mon Mar 30 2020 06:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.47187 * 2 1 4 4 C 1.35898 * 116.99768 * 180.02562 * 3 2 1 5 5 C 1.38808 * 120.01885 * 0.24351 * 4 3 2 6 6 C 1.38177 * 120.09088 * 180.26412 * 5 4 3 7 7 C 1.38150 * 120.13011 * 359.48973 * 6 5 4 8 8 C 1.38933 * 120.03482 * 0.25937 * 7 6 5 9 9 N 1.39664 * 120.04995 * 180.02562 * 8 7 6 10 10 C 1.46497 * 119.99904 * 359.97438 * 9 8 7 11 11 C 1.53004 * 109.47441 * 180.72374 * 10 9 8 12 12 C 1.50697 * 115.54575 * 65.12427 * 11 10 9 13 13 H 1.08008 * 119.99913 * 265.35387 * 12 11 10 14 14 C 1.37873 * 119.99924 * 85.36571 * 12 11 10 15 15 N 1.31509 * 120.00146 * 353.37895 * 14 12 11 16 16 Si 1.86804 * 120.00053 * 173.38188 * 14 12 11 17 17 H 1.48494 * 109.47189 * 59.99601 * 16 14 12 18 18 H 1.48504 * 109.47283 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46902 * 299.99710 * 16 14 12 20 20 C 1.53003 * 117.49879 * 279.45707 * 11 10 9 21 21 C 1.52996 * 117.49903 * 210.79726 * 11 10 9 22 22 C 1.38577 * 120.01439 * 180.02562 * 4 3 2 23 23 H 1.09003 * 109.47417 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46906 * 300.00394 * 1 2 3 25 25 H 1.09001 * 109.47046 * 59.99735 * 1 2 3 26 26 H 1.08996 * 109.46840 * 239.99901 * 2 1 3 27 27 H 1.09001 * 109.47046 * 120.00265 * 2 1 3 28 28 H 1.08002 * 119.96051 * 0.03284 * 5 4 3 29 29 H 1.07998 * 119.93509 * 179.77530 * 6 5 4 30 30 H 1.08006 * 119.98566 * 180.28034 * 7 6 5 31 31 H 0.97007 * 120.00227 * 179.97438 * 9 8 7 32 32 H 1.08998 * 109.47451 * 300.72461 * 10 9 8 33 33 H 1.09005 * 109.47023 * 60.72390 * 10 9 8 34 34 H 0.97006 * 120.00351 * 185.06237 * 15 14 12 35 35 H 1.09004 * 117.49428 * 359.97438 * 20 11 10 36 36 H 1.08999 * 117.49763 * 145.01735 * 20 11 10 37 37 H 1.09005 * 117.49865 * 214.97729 * 21 11 10 38 38 H 1.09002 * 117.50091 * 359.97438 * 21 11 10 39 39 H 1.08000 * 120.06391 * 0.02562 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 4.1995 0.4247 -0.0062 6 6 5.5696 0.6039 -0.0012 7 6 6.1022 1.8786 -0.0013 8 6 5.2606 2.9840 -0.0009 9 7 5.7987 4.2728 -0.0015 10 6 7.2517 4.4599 -0.0020 11 6 7.5734 5.9556 0.0156 12 6 7.1533 6.6961 1.2590 13 1 6.2028 7.2084 1.2873 14 6 7.9822 6.7199 2.3604 15 7 9.0771 5.9916 2.3752 16 14 7.5501 7.7865 3.8318 17 1 6.2365 7.3643 4.3805 18 1 8.5943 7.6350 4.8768 19 1 7.4758 9.2078 3.4080 20 6 7.5014 6.7094 -1.3139 21 6 8.8603 6.4095 -0.6762 22 6 3.8837 2.8057 0.0000 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.7863 -0.5731 -0.0107 29 1 6.2254 -0.2542 -0.0019 30 1 7.1735 2.0160 -0.0020 31 1 5.2104 5.0441 -0.0016 32 1 7.6794 3.9858 0.8814 33 1 7.6759 4.0075 -0.8984 34 1 9.6218 5.9508 3.1769 35 1 7.2252 6.1395 -2.2012 36 1 7.1505 7.7410 -1.2892 37 1 9.4029 7.2442 -0.2322 38 1 9.4780 5.6426 -1.1436 39 1 3.2270 3.6631 0.0012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088249798.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:16 Heat of formation + Delta-G solvation = 3.849290 kcal Electronic energy + Delta-G solvation = -18960.303285 eV Core-core repulsion = 16061.534053 eV Total energy + Delta-G solvation = -2898.769232 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.80324 -37.93141 -36.63814 -33.84947 -31.99053 -31.92630 -29.71564 -28.42910 -25.86895 -25.02440 -23.44536 -22.18047 -21.20954 -20.53966 -19.21976 -17.87390 -16.41462 -16.01610 -15.79420 -15.32941 -15.22189 -14.66484 -14.11505 -13.77681 -13.44355 -13.22020 -13.03399 -12.77814 -12.52871 -12.52137 -11.87659 -11.65822 -11.52915 -11.17863 -10.98328 -10.91510 -10.69059 -10.56431 -10.51129 -10.27578 -9.59061 -9.48656 -8.87641 -8.50367 -8.23460 -7.93270 -6.77836 -6.09612 -4.17263 1.89681 2.07781 3.27555 3.30304 3.32613 3.35189 4.24047 4.32133 4.36486 4.84572 4.91277 5.14499 5.18852 5.24081 5.31755 5.39413 5.50140 5.67220 5.77147 5.77909 5.92392 5.95802 6.00002 6.28727 6.32645 6.41237 6.51875 6.65988 6.70245 6.75674 6.83041 6.96470 7.03911 7.06808 7.37921 7.44551 7.74353 7.80490 8.08033 8.33235 8.50897 8.83142 9.49486 10.98321 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.023540 B = 0.004384 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.189271 B = 6384.815652 C = 6820.441678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.321 6.321 4 C 0.171 3.829 5 C -0.286 4.286 6 C -0.035 4.035 7 C -0.236 4.236 8 C 0.268 3.732 9 N -0.714 5.714 10 C 0.165 3.835 11 C 0.030 3.970 12 C -0.499 4.499 13 H 0.059 0.941 14 C 0.075 3.925 15 N -0.877 5.877 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.211 4.211 21 C -0.149 4.149 22 C -0.244 4.244 23 H 0.074 0.926 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.122 0.878 31 H 0.401 0.599 32 H 0.068 0.932 33 H 0.030 0.970 34 H 0.262 0.738 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.812 -10.752 -4.961 15.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.235 6.235 4 C 0.125 3.875 5 C -0.307 4.307 6 C -0.054 4.054 7 C -0.259 4.259 8 C 0.158 3.842 9 N -0.337 5.337 10 C 0.042 3.958 11 C 0.029 3.971 12 C -0.537 4.537 13 H 0.077 0.923 14 C -0.129 4.129 15 N -0.513 5.513 16 Si 0.718 3.282 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.248 4.248 21 C -0.187 4.187 22 C -0.268 4.268 23 H 0.093 0.907 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.133 0.867 29 H 0.134 0.866 30 H 0.139 0.861 31 H 0.236 0.764 32 H 0.086 0.914 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.511 -10.548 -4.859 15.011 hybrid contribution -0.186 0.577 0.927 1.108 sum -9.697 -9.971 -3.932 14.454 Atomic orbital electron populations 1.21776 0.93244 1.02478 1.03404 1.22677 0.95311 0.82570 1.01268 1.86018 1.19929 1.28687 1.88849 1.18529 0.81321 0.93602 0.94036 1.20751 0.94258 0.97031 1.18646 1.20557 0.93981 0.96293 0.94584 1.20591 0.99519 0.91400 1.14394 1.17606 0.90875 0.86250 0.89449 1.44949 1.07802 1.03372 1.77552 1.21024 0.78360 0.97618 0.98841 1.18976 0.97715 0.89775 0.90593 1.20310 1.03798 1.32718 0.96843 0.92306 1.24956 0.94476 0.95158 0.98321 1.69951 1.14415 1.38693 1.28263 0.86690 0.78139 0.81187 0.82201 1.20204 1.21247 1.20188 1.23023 1.03371 1.00895 0.97496 1.22495 0.90213 1.02453 1.03514 1.19613 0.93222 0.95081 1.18887 0.90691 0.91621 0.91668 0.92281 0.92242 0.86741 0.86591 0.86052 0.76405 0.91383 0.95194 0.92822 0.91602 0.90395 0.89853 0.91725 0.85943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.16 0.38 -0.87 16 2 C 0.06 0.61 5.46 37.16 0.20 0.81 16 3 O -0.32 -4.76 10.13 -19.42 -0.20 -4.95 16 4 C 0.17 2.78 6.68 -39.25 -0.26 2.52 16 5 C -0.29 -4.25 9.03 -39.39 -0.36 -4.61 16 6 C -0.04 -0.54 10.03 -39.64 -0.40 -0.93 16 7 C -0.24 -4.15 9.31 -39.36 -0.37 -4.51 16 8 C 0.27 4.99 6.65 -83.81 -0.56 4.43 16 9 N -0.71 -14.12 5.65 -58.65 -0.33 -14.45 16 10 C 0.17 3.57 4.74 -4.04 -0.02 3.55 16 11 C 0.03 0.70 1.37 -155.66 -0.21 0.49 16 12 C -0.50 -12.97 8.66 -34.44 -0.30 -13.27 16 13 H 0.06 1.53 7.82 -52.48 -0.41 1.12 16 14 C 0.07 1.99 5.39 -17.82 -0.10 1.89 16 15 N -0.88 -24.07 12.92 55.43 0.72 -23.36 16 16 Si 0.89 20.79 29.55 -169.99 -5.02 15.76 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 20 C -0.21 -4.40 9.96 -26.69 -0.27 -4.66 16 21 C -0.15 -3.35 9.42 -26.70 -0.25 -3.60 16 22 C -0.24 -4.29 9.83 -39.24 -0.39 -4.68 16 23 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.57 7.65 -51.93 -0.40 0.17 16 27 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 28 H 0.11 1.41 6.29 -52.49 -0.33 1.08 16 29 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 30 H 0.12 2.14 6.73 -52.48 -0.35 1.78 16 31 H 0.40 7.83 8.41 -40.82 -0.34 7.48 16 32 H 0.07 1.64 7.91 -51.93 -0.41 1.23 16 33 H 0.03 0.61 7.93 -51.93 -0.41 0.20 16 34 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 37 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 38 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 328.22 15.07 4.95 4.95 Total: -1.00 -27.71 328.22 -8.77 -36.48 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -6.00 Total: 9.01 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: -2.88 Total: -23.43 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.39 Total: -37.81 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.20 Total: -4.95 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.71 -8.77 -36.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249798.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.327 kcal (2) G-P(sol) polarization free energy of solvation -27.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds