Wall clock time and date at job start Mon Mar 30 2020 06:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.47187 * 2 1 4 4 C 1.35898 * 116.99768 * 180.02562 * 3 2 1 5 5 C 1.38808 * 120.01885 * 0.24351 * 4 3 2 6 6 C 1.38177 * 120.09088 * 180.26412 * 5 4 3 7 7 C 1.38150 * 120.13011 * 359.48973 * 6 5 4 8 8 C 1.38933 * 120.03482 * 0.25937 * 7 6 5 9 9 N 1.39664 * 120.04995 * 180.02562 * 8 7 6 10 10 C 1.46497 * 119.99904 * 359.97438 * 9 8 7 11 11 C 1.53004 * 109.47441 * 180.72374 * 10 9 8 12 12 C 1.50697 * 115.54575 * 65.12427 * 11 10 9 13 13 H 1.08008 * 119.99913 * 265.35387 * 12 11 10 14 14 C 1.37873 * 119.99924 * 85.36571 * 12 11 10 15 15 N 1.31509 * 120.00146 * 353.37895 * 14 12 11 16 16 Si 1.86804 * 120.00053 * 173.38188 * 14 12 11 17 17 H 1.48494 * 109.47189 * 59.99601 * 16 14 12 18 18 H 1.48504 * 109.47283 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46902 * 299.99710 * 16 14 12 20 20 C 1.53003 * 117.49879 * 279.45707 * 11 10 9 21 21 C 1.52996 * 117.49903 * 210.79726 * 11 10 9 22 22 C 1.38577 * 120.01439 * 180.02562 * 4 3 2 23 23 H 1.09003 * 109.47417 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46906 * 300.00394 * 1 2 3 25 25 H 1.09001 * 109.47046 * 59.99735 * 1 2 3 26 26 H 1.08996 * 109.46840 * 239.99901 * 2 1 3 27 27 H 1.09001 * 109.47046 * 120.00265 * 2 1 3 28 28 H 1.08002 * 119.96051 * 0.03284 * 5 4 3 29 29 H 1.07998 * 119.93509 * 179.77530 * 6 5 4 30 30 H 1.08006 * 119.98566 * 180.28034 * 7 6 5 31 31 H 0.97007 * 120.00227 * 179.97438 * 9 8 7 32 32 H 1.08998 * 109.47451 * 300.72461 * 10 9 8 33 33 H 1.09005 * 109.47023 * 60.72390 * 10 9 8 34 34 H 0.97006 * 120.00351 * 185.06237 * 15 14 12 35 35 H 1.09004 * 117.49428 * 359.97438 * 20 11 10 36 36 H 1.08999 * 117.49763 * 145.01735 * 20 11 10 37 37 H 1.09005 * 117.49865 * 214.97729 * 21 11 10 38 38 H 1.09002 * 117.50091 * 359.97438 * 21 11 10 39 39 H 1.08000 * 120.06391 * 0.02562 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 4.1995 0.4247 -0.0062 6 6 5.5696 0.6039 -0.0012 7 6 6.1022 1.8786 -0.0013 8 6 5.2606 2.9840 -0.0009 9 7 5.7987 4.2728 -0.0015 10 6 7.2517 4.4599 -0.0020 11 6 7.5734 5.9556 0.0156 12 6 7.1533 6.6961 1.2590 13 1 6.2028 7.2084 1.2873 14 6 7.9822 6.7199 2.3604 15 7 9.0771 5.9916 2.3752 16 14 7.5501 7.7865 3.8318 17 1 6.2365 7.3643 4.3805 18 1 8.5943 7.6350 4.8768 19 1 7.4758 9.2078 3.4080 20 6 7.5014 6.7094 -1.3139 21 6 8.8603 6.4095 -0.6762 22 6 3.8837 2.8057 0.0000 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.7863 -0.5731 -0.0107 29 1 6.2254 -0.2542 -0.0019 30 1 7.1735 2.0160 -0.0020 31 1 5.2104 5.0441 -0.0016 32 1 7.6794 3.9858 0.8814 33 1 7.6759 4.0075 -0.8984 34 1 9.6218 5.9508 3.1769 35 1 7.2252 6.1395 -2.2012 36 1 7.1505 7.7410 -1.2892 37 1 9.4029 7.2442 -0.2322 38 1 9.4780 5.6426 -1.1436 39 1 3.2270 3.6631 0.0012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088249798.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:15 Heat of formation + Delta-G solvation = -10.470574 kcal Electronic energy + Delta-G solvation = -18960.924240 eV Core-core repulsion = 16061.534053 eV Total energy + Delta-G solvation = -2899.390188 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.00211 -39.33699 -38.19917 -35.29097 -33.98759 -32.80950 -30.97021 -29.74567 -27.72025 -26.68254 -24.40983 -23.46348 -22.93297 -21.77597 -21.03515 -19.08754 -18.20762 -17.08473 -16.95065 -16.87888 -16.56524 -16.46296 -15.74818 -15.26643 -14.84325 -14.49954 -14.36131 -13.98622 -13.94234 -13.49458 -13.30201 -13.03877 -12.88911 -12.80015 -12.75134 -12.39603 -12.30891 -12.04311 -11.69290 -11.64806 -11.41171 -10.97512 -10.64862 -10.45040 -10.03805 -9.19598 -8.22105 -8.10913 -6.23175 0.61473 0.78248 1.40830 1.41849 1.48281 2.21893 2.40967 2.81538 3.01898 3.16718 3.54430 4.00455 4.12147 4.20278 4.24211 4.31504 4.41164 4.45532 4.50834 4.55803 4.65051 4.69758 4.79080 4.81273 4.96519 4.98771 4.99180 5.14323 5.24252 5.26123 5.46002 5.48101 5.61361 5.61783 5.69080 5.76269 5.81710 6.35733 6.56066 6.63546 6.81252 7.01612 7.45296 8.95565 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.023540 B = 0.004384 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.189271 B = 6384.815652 C = 6820.441678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.336 6.336 4 C 0.167 3.833 5 C -0.276 4.276 6 C -0.031 4.031 7 C -0.255 4.255 8 C 0.248 3.752 9 N -0.722 5.722 10 C 0.186 3.814 11 C 0.007 3.993 12 C -0.508 4.508 13 H 0.052 0.948 14 C 0.030 3.970 15 N -0.903 5.903 16 Si 0.945 3.055 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.272 1.272 20 C -0.184 4.184 21 C -0.154 4.154 22 C -0.259 4.259 23 H 0.102 0.898 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.147 0.853 29 H 0.148 0.852 30 H 0.114 0.886 31 H 0.399 0.601 32 H 0.034 0.966 33 H 0.040 0.960 34 H 0.260 0.740 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.163 -12.391 -5.451 17.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.250 6.250 4 C 0.121 3.879 5 C -0.297 4.297 6 C -0.049 4.049 7 C -0.278 4.278 8 C 0.140 3.860 9 N -0.346 5.346 10 C 0.061 3.939 11 C 0.006 3.994 12 C -0.546 4.546 13 H 0.071 0.929 14 C -0.171 4.171 15 N -0.541 5.541 16 Si 0.771 3.229 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.221 4.221 21 C -0.193 4.193 22 C -0.283 4.283 23 H 0.121 0.879 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.165 0.835 29 H 0.166 0.834 30 H 0.132 0.868 31 H 0.234 0.766 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.892 -12.209 -5.357 17.216 hybrid contribution 0.113 0.969 1.052 1.435 sum -10.780 -11.240 -4.305 16.158 Atomic orbital electron populations 1.21814 0.91537 1.04187 1.03024 1.23064 0.96748 0.80766 1.02362 1.86019 1.18986 1.31520 1.88500 1.18659 0.82396 0.93464 0.93415 1.21125 0.93917 0.98112 1.16544 1.20920 0.94774 0.96267 0.92984 1.20728 0.99199 0.92336 1.15518 1.17794 0.91549 0.85946 0.90698 1.44774 1.06779 1.03975 1.79068 1.20602 0.79505 0.96114 0.97648 1.19044 0.98661 0.90747 0.90956 1.20588 1.03428 1.32517 0.98073 0.92943 1.25591 0.94619 0.96204 1.00672 1.70052 1.15276 1.40016 1.28711 0.85828 0.77673 0.79853 0.79537 1.20207 1.21133 1.19728 1.22994 1.01345 1.00833 0.96948 1.22431 0.90636 1.02162 1.04026 1.19711 0.92896 0.96068 1.19594 0.87906 0.92153 0.91932 0.90922 0.91245 0.83549 0.83424 0.86824 0.76644 0.94776 0.94204 0.93092 0.89328 0.90291 0.92026 0.90477 0.86168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 10.28 71.98 0.74 -1.31 16 2 C 0.05 0.83 5.46 71.98 0.39 1.22 16 3 O -0.34 -9.38 10.13 -92.41 -0.94 -10.31 16 4 C 0.17 5.18 6.68 22.49 0.15 5.33 16 5 C -0.28 -7.44 9.03 22.39 0.20 -7.24 16 6 C -0.03 -0.87 10.03 22.23 0.22 -0.65 16 7 C -0.25 -8.85 9.31 22.42 0.21 -8.64 16 8 C 0.25 9.28 6.65 38.20 0.25 9.53 16 9 N -0.72 -29.05 5.65 -339.47 -1.92 -30.96 16 10 C 0.19 8.17 4.74 86.38 0.41 8.58 16 11 C 0.01 0.31 1.37 -52.93 -0.07 0.24 16 12 C -0.51 -26.80 8.66 25.60 0.22 -26.58 16 13 H 0.05 2.76 7.82 -2.91 -0.02 2.74 16 14 C 0.03 1.62 5.39 84.65 0.46 2.08 16 15 N -0.90 -50.58 12.92 21.44 0.28 -50.31 16 16 Si 0.94 43.16 29.55 68.60 2.03 45.19 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 18 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 20 C -0.18 -7.53 9.96 30.62 0.30 -7.22 16 21 C -0.15 -6.98 9.42 30.62 0.29 -6.69 16 22 C -0.26 -9.07 9.83 22.49 0.22 -8.85 16 23 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 1.14 7.65 -2.39 -0.02 1.13 16 27 H 0.07 1.14 7.67 -2.39 -0.02 1.12 16 28 H 0.15 2.96 6.29 -2.91 -0.02 2.95 16 29 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 30 H 0.11 4.05 6.73 -2.91 -0.02 4.03 16 31 H 0.40 15.94 8.41 -92.70 -0.78 15.16 16 32 H 0.03 1.71 7.91 -2.39 -0.02 1.69 16 33 H 0.04 1.64 7.93 -2.38 -0.02 1.62 16 34 H 0.26 14.07 8.32 -92.70 -0.77 13.30 16 35 H 0.09 3.22 8.14 -2.38 -0.02 3.20 16 36 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 37 H 0.06 3.02 8.14 -2.38 -0.02 3.00 16 38 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 39 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -59.56 328.22 3.70 -55.86 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: 0.25 Total: 30.73 kcal Atomic # 6 Polarization: -44.19 SS G_CDS: 4.00 Total: -40.19 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -1.64 Total: -81.27 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -0.94 Total: -10.31 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -59.56 3.70 -55.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249798.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.386 kcal (2) G-P(sol) polarization free energy of solvation -59.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds