Wall clock time and date at job start Mon Mar 30 2020 06:35:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 O 1.42902 * 109.47187 * 2 1
4 4 C 1.35898 * 116.99768 * 180.02562 * 3 2 1
5 5 C 1.38808 * 120.01885 * 0.24351 * 4 3 2
6 6 C 1.38177 * 120.09088 * 180.26412 * 5 4 3
7 7 C 1.38150 * 120.13011 * 359.48973 * 6 5 4
8 8 C 1.38933 * 120.03482 * 0.25937 * 7 6 5
9 9 N 1.39664 * 120.04995 * 180.02562 * 8 7 6
10 10 C 1.46497 * 119.99904 * 359.97438 * 9 8 7
11 11 C 1.53004 * 109.47441 * 180.72374 * 10 9 8
12 12 C 1.50697 * 115.54575 * 65.12427 * 11 10 9
13 13 H 1.08008 * 119.99913 * 265.35387 * 12 11 10
14 14 C 1.37873 * 119.99924 * 85.36571 * 12 11 10
15 15 N 1.31509 * 120.00146 * 353.37895 * 14 12 11
16 16 Si 1.86804 * 120.00053 * 173.38188 * 14 12 11
17 17 H 1.48494 * 109.47189 * 59.99601 * 16 14 12
18 18 H 1.48504 * 109.47283 * 179.97438 * 16 14 12
19 19 H 1.48499 * 109.46902 * 299.99710 * 16 14 12
20 20 C 1.53003 * 117.49879 * 279.45707 * 11 10 9
21 21 C 1.52996 * 117.49903 * 210.79726 * 11 10 9
22 22 C 1.38577 * 120.01439 * 180.02562 * 4 3 2
23 23 H 1.09003 * 109.47417 * 179.97438 * 1 2 3
24 24 H 1.09004 * 109.46906 * 300.00394 * 1 2 3
25 25 H 1.09001 * 109.47046 * 59.99735 * 1 2 3
26 26 H 1.08996 * 109.46840 * 239.99901 * 2 1 3
27 27 H 1.09001 * 109.47046 * 120.00265 * 2 1 3
28 28 H 1.08002 * 119.96051 * 0.03284 * 5 4 3
29 29 H 1.07998 * 119.93509 * 179.77530 * 6 5 4
30 30 H 1.08006 * 119.98566 * 180.28034 * 7 6 5
31 31 H 0.97007 * 120.00227 * 179.97438 * 9 8 7
32 32 H 1.08998 * 109.47451 * 300.72461 * 10 9 8
33 33 H 1.09005 * 109.47023 * 60.72390 * 10 9 8
34 34 H 0.97006 * 120.00351 * 185.06237 * 15 14 12
35 35 H 1.09004 * 117.49428 * 359.97438 * 20 11 10
36 36 H 1.08999 * 117.49763 * 145.01735 * 20 11 10
37 37 H 1.09005 * 117.49865 * 214.97729 * 21 11 10
38 38 H 1.09002 * 117.50091 * 359.97438 * 21 11 10
39 39 H 1.08000 * 120.06391 * 0.02562 * 22 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3473 0.0000
4 6 3.3536 1.5253 -0.0005
5 6 4.1995 0.4247 -0.0062
6 6 5.5696 0.6039 -0.0012
7 6 6.1022 1.8786 -0.0013
8 6 5.2606 2.9840 -0.0009
9 7 5.7987 4.2728 -0.0015
10 6 7.2517 4.4599 -0.0020
11 6 7.5734 5.9556 0.0156
12 6 7.1533 6.6961 1.2590
13 1 6.2028 7.2084 1.2873
14 6 7.9822 6.7199 2.3604
15 7 9.0771 5.9916 2.3752
16 14 7.5501 7.7865 3.8318
17 1 6.2365 7.3643 4.3805
18 1 8.5943 7.6350 4.8768
19 1 7.4758 9.2078 3.4080
20 6 7.5014 6.7094 -1.3139
21 6 8.8603 6.4095 -0.6762
22 6 3.8837 2.8057 0.0000
23 1 -0.3634 -1.0277 -0.0005
24 1 -0.3633 0.5139 0.8900
25 1 -0.3633 0.5139 -0.8900
26 1 1.8933 -0.5138 -0.8900
27 1 1.8933 -0.5139 0.8900
28 1 3.7863 -0.5731 -0.0107
29 1 6.2254 -0.2542 -0.0019
30 1 7.1735 2.0160 -0.0020
31 1 5.2104 5.0441 -0.0016
32 1 7.6794 3.9858 0.8814
33 1 7.6759 4.0075 -0.8984
34 1 9.6218 5.9508 3.1769
35 1 7.2252 6.1395 -2.2012
36 1 7.1505 7.7410 -1.2892
37 1 9.4029 7.2442 -0.2322
38 1 9.4780 5.6426 -1.1436
39 1 3.2270 3.6631 0.0012
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000088249798.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:35:15
Heat of formation + Delta-G solvation = -10.470574 kcal
Electronic energy + Delta-G solvation = -18960.924240 eV
Core-core repulsion = 16061.534053 eV
Total energy + Delta-G solvation = -2899.390188 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 261.147 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-41.00211 -39.33699 -38.19917 -35.29097 -33.98759 -32.80950 -30.97021 -29.74567
-27.72025 -26.68254 -24.40983 -23.46348 -22.93297 -21.77597 -21.03515 -19.08754
-18.20762 -17.08473 -16.95065 -16.87888 -16.56524 -16.46296 -15.74818 -15.26643
-14.84325 -14.49954 -14.36131 -13.98622 -13.94234 -13.49458 -13.30201 -13.03877
-12.88911 -12.80015 -12.75134 -12.39603 -12.30891 -12.04311 -11.69290 -11.64806
-11.41171 -10.97512 -10.64862 -10.45040 -10.03805 -9.19598 -8.22105 -8.10913
-6.23175 0.61473 0.78248 1.40830 1.41849 1.48281 2.21893 2.40967
2.81538 3.01898 3.16718 3.54430 4.00455 4.12147 4.20278 4.24211
4.31504 4.41164 4.45532 4.50834 4.55803 4.65051 4.69758 4.79080
4.81273 4.96519 4.98771 4.99180 5.14323 5.24252 5.26123 5.46002
5.48101 5.61361 5.61783 5.69080 5.76269 5.81710 6.35733 6.56066
6.63546 6.81252 7.01612 7.45296 8.95565
Molecular weight = 261.15amu
Principal moments of inertia in cm(-1)
A = 0.023540 B = 0.004384 C = 0.004104
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1189.189271 B = 6384.815652 C = 6820.441678
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.045 3.955
3 O -0.336 6.336
4 C 0.167 3.833
5 C -0.276 4.276
6 C -0.031 4.031
7 C -0.255 4.255
8 C 0.248 3.752
9 N -0.722 5.722
10 C 0.186 3.814
11 C 0.007 3.993
12 C -0.508 4.508
13 H 0.052 0.948
14 C 0.030 3.970
15 N -0.903 5.903
16 Si 0.945 3.055
17 H -0.277 1.277
18 H -0.286 1.286
19 H -0.272 1.272
20 C -0.184 4.184
21 C -0.154 4.154
22 C -0.259 4.259
23 H 0.102 0.898
24 H 0.059 0.941
25 H 0.062 0.938
26 H 0.073 0.927
27 H 0.069 0.931
28 H 0.147 0.853
29 H 0.148 0.852
30 H 0.114 0.886
31 H 0.399 0.601
32 H 0.034 0.966
33 H 0.040 0.960
34 H 0.260 0.740
35 H 0.088 0.912
36 H 0.079 0.921
37 H 0.061 0.939
38 H 0.077 0.923
39 H 0.120 0.880
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.163 -12.391 -5.451 17.547
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.029 4.029
3 O -0.250 6.250
4 C 0.121 3.879
5 C -0.297 4.297
6 C -0.049 4.049
7 C -0.278 4.278
8 C 0.140 3.860
9 N -0.346 5.346
10 C 0.061 3.939
11 C 0.006 3.994
12 C -0.546 4.546
13 H 0.071 0.929
14 C -0.171 4.171
15 N -0.541 5.541
16 Si 0.771 3.229
17 H -0.202 1.202
18 H -0.211 1.211
19 H -0.197 1.197
20 C -0.221 4.221
21 C -0.193 4.193
22 C -0.283 4.283
23 H 0.121 0.879
24 H 0.078 0.922
25 H 0.081 0.919
26 H 0.091 0.909
27 H 0.088 0.912
28 H 0.165 0.835
29 H 0.166 0.834
30 H 0.132 0.868
31 H 0.234 0.766
32 H 0.052 0.948
33 H 0.058 0.942
34 H 0.069 0.931
35 H 0.107 0.893
36 H 0.097 0.903
37 H 0.080 0.920
38 H 0.095 0.905
39 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges -10.892 -12.209 -5.357 17.216
hybrid contribution 0.113 0.969 1.052 1.435
sum -10.780 -11.240 -4.305 16.158
Atomic orbital electron populations
1.21814 0.91537 1.04187 1.03024 1.23064 0.96748 0.80766 1.02362
1.86019 1.18986 1.31520 1.88500 1.18659 0.82396 0.93464 0.93415
1.21125 0.93917 0.98112 1.16544 1.20920 0.94774 0.96267 0.92984
1.20728 0.99199 0.92336 1.15518 1.17794 0.91549 0.85946 0.90698
1.44774 1.06779 1.03975 1.79068 1.20602 0.79505 0.96114 0.97648
1.19044 0.98661 0.90747 0.90956 1.20588 1.03428 1.32517 0.98073
0.92943 1.25591 0.94619 0.96204 1.00672 1.70052 1.15276 1.40016
1.28711 0.85828 0.77673 0.79853 0.79537 1.20207 1.21133 1.19728
1.22994 1.01345 1.00833 0.96948 1.22431 0.90636 1.02162 1.04026
1.19711 0.92896 0.96068 1.19594 0.87906 0.92153 0.91932 0.90922
0.91245 0.83549 0.83424 0.86824 0.76644 0.94776 0.94204 0.93092
0.89328 0.90291 0.92026 0.90477 0.86168
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.05 10.28 71.98 0.74 -1.31 16
2 C 0.05 0.83 5.46 71.98 0.39 1.22 16
3 O -0.34 -9.38 10.13 -92.41 -0.94 -10.31 16
4 C 0.17 5.18 6.68 22.49 0.15 5.33 16
5 C -0.28 -7.44 9.03 22.39 0.20 -7.24 16
6 C -0.03 -0.87 10.03 22.23 0.22 -0.65 16
7 C -0.25 -8.85 9.31 22.42 0.21 -8.64 16
8 C 0.25 9.28 6.65 38.20 0.25 9.53 16
9 N -0.72 -29.05 5.65 -339.47 -1.92 -30.96 16
10 C 0.19 8.17 4.74 86.38 0.41 8.58 16
11 C 0.01 0.31 1.37 -52.93 -0.07 0.24 16
12 C -0.51 -26.80 8.66 25.60 0.22 -26.58 16
13 H 0.05 2.76 7.82 -2.91 -0.02 2.74 16
14 C 0.03 1.62 5.39 84.65 0.46 2.08 16
15 N -0.90 -50.58 12.92 21.44 0.28 -50.31 16
16 Si 0.94 43.16 29.55 68.60 2.03 45.19 16
17 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16
18 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16
19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16
20 C -0.18 -7.53 9.96 30.62 0.30 -7.22 16
21 C -0.15 -6.98 9.42 30.62 0.29 -6.69 16
22 C -0.26 -9.07 9.83 22.49 0.22 -8.85 16
23 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16
24 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16
25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16
26 H 0.07 1.14 7.65 -2.39 -0.02 1.13 16
27 H 0.07 1.14 7.67 -2.39 -0.02 1.12 16
28 H 0.15 2.96 6.29 -2.91 -0.02 2.95 16
29 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16
30 H 0.11 4.05 6.73 -2.91 -0.02 4.03 16
31 H 0.40 15.94 8.41 -92.70 -0.78 15.16 16
32 H 0.03 1.71 7.91 -2.39 -0.02 1.69 16
33 H 0.04 1.64 7.93 -2.38 -0.02 1.62 16
34 H 0.26 14.07 8.32 -92.70 -0.77 13.30 16
35 H 0.09 3.22 8.14 -2.38 -0.02 3.20 16
36 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16
37 H 0.06 3.02 8.14 -2.38 -0.02 3.00 16
38 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16
39 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16
Total: -1.00 -59.56 328.22 3.70 -55.86
By element:
Atomic # 1 Polarization: 30.47 SS G_CDS: 0.25 Total: 30.73 kcal
Atomic # 6 Polarization: -44.19 SS G_CDS: 4.00 Total: -40.19 kcal
Atomic # 7 Polarization: -79.63 SS G_CDS: -1.64 Total: -81.27 kcal
Atomic # 8 Polarization: -9.38 SS G_CDS: -0.94 Total: -10.31 kcal
Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal
Total: -59.56 3.70 -55.86 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000088249798.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.386 kcal
(2) G-P(sol) polarization free energy of solvation -59.560 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.174 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.704 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.856 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.471 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds