Wall clock time and date at job start Mon Mar 30 2020 06:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36019 * 116.99894 * 2 1 4 4 C 1.38507 * 120.07878 * 0.02562 * 3 2 1 5 5 C 1.38277 * 120.02086 * 180.02562 * 4 3 2 6 6 C 1.38257 * 120.17893 * 359.97438 * 5 4 3 7 7 C 1.38227 * 120.15928 * 359.97438 * 6 5 4 8 8 C 1.38729 * 119.97816 * 359.76137 * 7 6 5 9 9 N 1.39964 * 120.08447 * 180.25330 * 8 7 6 10 10 C 1.46898 * 110.99984 * 64.47976 * 9 8 7 11 11 C 1.46896 * 111.00630 * 300.51945 * 9 8 7 12 12 C 1.52999 * 109.47379 * 195.33102 * 11 9 8 13 13 C 1.50699 * 115.54731 * 39.27413 * 12 11 9 14 14 H 1.07999 * 119.99620 * 267.62947 * 13 12 11 15 15 C 1.37880 * 120.00475 * 87.63420 * 13 12 11 16 16 N 1.31510 * 120.00269 * 182.50957 * 15 13 12 17 17 Si 1.86801 * 119.99872 * 2.50818 * 15 13 12 18 18 H 1.48501 * 109.47199 * 88.75533 * 17 15 13 19 19 H 1.48500 * 109.47083 * 208.75807 * 17 15 13 20 20 H 1.48500 * 109.47051 * 328.75541 * 17 15 13 21 21 C 1.52998 * 117.50026 * 253.55993 * 12 11 9 22 22 C 1.52996 * 60.00001 * 252.51122 * 21 12 11 23 23 H 1.09000 * 109.47395 * 60.00089 * 1 2 3 24 24 H 1.09007 * 109.46721 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46886 * 299.99792 * 1 2 3 26 26 H 1.08003 * 119.99025 * 0.02562 * 4 3 2 27 27 H 1.07998 * 119.91040 * 179.97438 * 5 4 3 28 28 H 1.07993 * 119.92170 * 179.97438 * 6 5 4 29 29 H 1.08003 * 120.00849 * 180.02562 * 7 6 5 30 30 H 1.09001 * 109.47657 * 54.24835 * 10 9 8 31 31 H 1.09004 * 109.47207 * 174.25365 * 10 9 8 32 32 H 1.09002 * 109.47260 * 294.25056 * 10 9 8 33 33 H 1.09003 * 109.47281 * 315.33517 * 11 9 8 34 34 H 1.08999 * 109.46911 * 75.32946 * 11 9 8 35 35 H 0.96998 * 120.00017 * 179.97438 * 16 15 13 36 36 H 1.08992 * 117.49917 * 0.02562 * 21 12 11 37 37 H 1.09001 * 117.49288 * 145.02004 * 21 12 11 38 38 H 1.09006 * 117.50141 * 252.51281 * 22 21 12 39 39 H 1.08998 * 117.52011 * 107.48343 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2937 2.3746 0.0005 5 6 1.9227 3.6060 0.0000 6 6 3.3032 3.6813 -0.0005 7 6 4.0617 2.5258 0.0000 8 6 3.4375 1.2869 0.0061 9 7 4.2034 0.1154 0.0120 10 6 4.9859 0.0042 1.2502 11 6 5.0746 0.0498 -1.1690 12 6 5.6007 -1.3771 -1.3361 13 6 4.6101 -2.4737 -1.0412 14 1 4.5535 -2.8979 -0.0496 15 6 3.7761 -2.9357 -2.0372 16 7 2.8780 -3.8579 -1.7679 17 14 3.9219 -2.2517 -3.7694 18 1 4.9128 -3.0499 -4.5350 19 1 2.6006 -2.3248 -4.4432 20 1 4.3681 -0.8367 -3.7069 21 6 7.0670 -1.6352 -0.9835 22 6 6.6221 -1.6278 -2.4473 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2151 2.3193 0.0014 27 1 1.3340 4.5114 0.0000 28 1 3.7901 4.6453 -0.0014 29 1 5.1400 2.5874 0.0000 30 1 4.3203 0.0875 2.1094 31 1 5.4920 -0.9609 1.2749 32 1 5.7261 0.8036 1.2853 33 1 4.5072 0.3341 -2.0552 34 1 5.9135 0.7337 -1.0399 35 1 2.2911 -4.1826 -2.4685 36 1 7.6567 -0.7886 -0.6321 37 1 7.3153 -2.5985 -0.5379 38 1 6.5777 -2.5861 -2.9648 39 1 6.9189 -0.7763 -3.0596 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259454.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:32 Heat of formation + Delta-G solvation = 39.173650 kcal Electronic energy + Delta-G solvation = -20389.179162 eV Core-core repulsion = 17491.941709 eV Total energy + Delta-G solvation = -2897.237453 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.99455 -37.86510 -36.79003 -35.00872 -31.81058 -29.89742 -29.48931 -27.00582 -26.80896 -25.32032 -23.96944 -21.77018 -21.54137 -20.76886 -18.71777 -17.72210 -16.24212 -15.89015 -15.72868 -15.26152 -14.80571 -14.41819 -14.05705 -13.94731 -13.74264 -13.22750 -12.88757 -12.55484 -12.26075 -12.05195 -11.82671 -11.61179 -11.42974 -11.25218 -10.98827 -10.73635 -10.61516 -10.32957 -10.31582 -9.97258 -9.42992 -8.92814 -8.60012 -8.33307 -8.28423 -7.72631 -7.51966 -5.84567 -3.80795 1.51791 1.73976 3.42619 3.51219 3.55776 3.77940 3.99470 4.44084 4.63689 5.02294 5.05866 5.16883 5.31538 5.41830 5.45741 5.48258 5.63345 5.79257 5.86822 5.88051 5.89724 5.97966 6.07165 6.12832 6.25109 6.27259 6.47604 6.52280 6.56460 6.61652 6.69051 6.73551 6.80555 7.05279 7.14631 7.22210 7.72114 7.76127 8.02753 8.26437 8.75979 9.19362 9.80508 11.28740 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018645 B = 0.008707 C = 0.007142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.414683 B = 3214.947914 C = 3919.546465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.272 6.272 3 C 0.154 3.846 4 C -0.215 4.215 5 C -0.092 4.092 6 C -0.158 4.158 7 C -0.118 4.118 8 C 0.070 3.930 9 N -0.464 5.464 10 C 0.044 3.956 11 C 0.101 3.899 12 C 0.011 3.989 13 C -0.445 4.445 14 H 0.077 0.923 15 C 0.081 3.919 16 N -0.903 5.903 17 Si 0.876 3.124 18 H -0.285 1.285 19 H -0.300 1.300 20 H -0.264 1.264 21 C -0.186 4.186 22 C -0.205 4.205 23 H 0.047 0.953 24 H 0.100 0.900 25 H 0.047 0.953 26 H 0.126 0.874 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.121 0.879 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.011 0.989 33 H 0.064 0.936 34 H 0.012 0.988 35 H 0.258 0.742 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.263 13.334 3.608 13.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.183 6.183 3 C 0.106 3.894 4 C -0.234 4.234 5 C -0.110 4.110 6 C -0.177 4.177 7 C -0.138 4.138 8 C -0.025 4.025 9 N -0.183 5.183 10 C -0.103 4.103 11 C -0.025 4.025 12 C 0.009 3.991 13 C -0.483 4.483 14 H 0.095 0.905 15 C -0.120 4.120 16 N -0.541 5.541 17 Si 0.706 3.294 18 H -0.211 1.211 19 H -0.227 1.227 20 H -0.189 1.189 21 C -0.223 4.223 22 C -0.243 4.243 23 H 0.066 0.934 24 H 0.118 0.882 25 H 0.065 0.935 26 H 0.144 0.856 27 H 0.136 0.864 28 H 0.134 0.866 29 H 0.139 0.861 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.030 0.970 33 H 0.082 0.918 34 H 0.030 0.970 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.647 12.578 3.518 13.164 hybrid contribution 0.279 1.212 -1.116 1.671 sum -1.368 13.791 2.402 14.065 Atomic orbital electron populations 1.23050 0.79912 1.04002 1.00052 1.86528 1.19598 1.25047 1.87095 1.19117 0.91301 0.84648 0.94327 1.21170 0.99823 0.92298 1.10113 1.20814 0.94506 0.96634 0.99087 1.20828 0.93846 0.97766 1.05268 1.21574 0.99968 0.92433 0.99854 1.18393 0.90602 0.89754 1.03788 1.59242 1.25394 1.31245 1.02427 1.22304 0.95606 1.01272 0.91087 1.21899 0.92775 0.96418 0.91443 1.19458 0.88463 0.93820 0.97321 1.19974 1.15694 1.14648 0.97981 0.90546 1.24804 0.94625 0.94445 0.98110 1.69887 1.21145 1.30146 1.32954 0.86951 0.76140 0.80453 0.85837 1.21121 1.22694 1.18878 1.22897 1.00500 1.01152 0.97760 1.22967 1.08262 1.01424 0.91631 0.93395 0.88152 0.93471 0.85616 0.86375 0.86567 0.86067 0.92581 0.89995 0.97027 0.91781 0.97009 0.93192 0.91440 0.89611 0.89411 0.91316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.27 -5.57 10.24 -19.80 -0.20 -5.77 16 3 C 0.15 2.87 6.70 -39.09 -0.26 2.61 16 4 C -0.21 -3.21 9.04 -39.47 -0.36 -3.56 16 5 C -0.09 -1.22 10.04 -39.56 -0.40 -1.62 16 6 C -0.16 -2.16 10.04 -39.58 -0.40 -2.56 16 7 C -0.12 -1.89 8.75 -39.40 -0.34 -2.23 16 8 C 0.07 1.33 4.63 -83.57 -0.39 0.95 16 9 N -0.46 -9.85 3.76 -178.79 -0.67 -10.52 16 10 C 0.04 0.82 9.11 60.06 0.55 1.37 16 11 C 0.10 2.20 4.42 -3.83 -0.02 2.18 16 12 C 0.01 0.25 0.35 -155.66 -0.05 0.20 16 13 C -0.45 -12.49 8.75 -34.44 -0.30 -12.79 16 14 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 15 C 0.08 2.36 5.47 -17.82 -0.10 2.26 16 16 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 17 Si 0.88 22.72 24.91 -169.99 -4.23 18.49 16 18 H -0.28 -7.22 7.10 56.52 0.40 -6.82 16 19 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 20 H -0.26 -6.57 5.55 56.52 0.31 -6.26 16 21 C -0.19 -3.80 9.67 -26.73 -0.26 -4.06 16 22 C -0.21 -4.47 7.46 -26.73 -0.20 -4.67 16 23 H 0.05 0.63 7.67 -51.93 -0.40 0.23 16 24 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 25 H 0.05 0.57 7.66 -51.93 -0.40 0.18 16 26 H 0.13 1.56 6.30 -52.48 -0.33 1.23 16 27 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 28 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 29 H 0.12 1.79 7.30 -52.48 -0.38 1.41 16 30 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 31 H 0.08 1.62 7.33 -51.93 -0.38 1.24 16 32 H 0.01 0.19 7.51 -51.93 -0.39 -0.20 16 33 H 0.06 1.50 6.53 -51.93 -0.34 1.16 16 34 H 0.01 0.23 7.36 -51.93 -0.38 -0.15 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.07 1.22 8.08 -51.93 -0.42 0.80 16 37 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 38 H 0.09 2.02 6.96 -51.93 -0.36 1.66 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 314.57 15.07 4.74 4.74 Total: -1.00 -32.04 314.57 -7.09 -39.13 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -5.96 Total: 1.72 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: -1.53 Total: -20.56 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.10 Total: -37.75 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -0.20 Total: -5.77 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.23 Total: 18.49 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.04 -7.09 -39.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259454.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.306 kcal (2) G-P(sol) polarization free energy of solvation -32.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds