Wall clock time and date at job start Mon Mar 30 2020 06:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36019 * 116.99894 * 2 1 4 4 C 1.38507 * 120.07878 * 0.02562 * 3 2 1 5 5 C 1.38277 * 120.02086 * 180.02562 * 4 3 2 6 6 C 1.38257 * 120.17893 * 359.97438 * 5 4 3 7 7 C 1.38227 * 120.15928 * 359.97438 * 6 5 4 8 8 C 1.38729 * 119.97816 * 359.76137 * 7 6 5 9 9 N 1.39964 * 120.08447 * 180.25330 * 8 7 6 10 10 C 1.46898 * 110.99984 * 64.47976 * 9 8 7 11 11 C 1.46896 * 111.00630 * 300.51945 * 9 8 7 12 12 C 1.52999 * 109.47379 * 195.33102 * 11 9 8 13 13 C 1.50699 * 115.54731 * 39.27413 * 12 11 9 14 14 H 1.07999 * 119.99620 * 267.62947 * 13 12 11 15 15 C 1.37880 * 120.00475 * 87.63420 * 13 12 11 16 16 N 1.31510 * 120.00269 * 182.50957 * 15 13 12 17 17 Si 1.86801 * 119.99872 * 2.50818 * 15 13 12 18 18 H 1.48501 * 109.47199 * 88.75533 * 17 15 13 19 19 H 1.48500 * 109.47083 * 208.75807 * 17 15 13 20 20 H 1.48500 * 109.47051 * 328.75541 * 17 15 13 21 21 C 1.52998 * 117.50026 * 253.55993 * 12 11 9 22 22 C 1.52996 * 60.00001 * 252.51122 * 21 12 11 23 23 H 1.09000 * 109.47395 * 60.00089 * 1 2 3 24 24 H 1.09007 * 109.46721 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46886 * 299.99792 * 1 2 3 26 26 H 1.08003 * 119.99025 * 0.02562 * 4 3 2 27 27 H 1.07998 * 119.91040 * 179.97438 * 5 4 3 28 28 H 1.07993 * 119.92170 * 179.97438 * 6 5 4 29 29 H 1.08003 * 120.00849 * 180.02562 * 7 6 5 30 30 H 1.09001 * 109.47657 * 54.24835 * 10 9 8 31 31 H 1.09004 * 109.47207 * 174.25365 * 10 9 8 32 32 H 1.09002 * 109.47260 * 294.25056 * 10 9 8 33 33 H 1.09003 * 109.47281 * 315.33517 * 11 9 8 34 34 H 1.08999 * 109.46911 * 75.32946 * 11 9 8 35 35 H 0.96998 * 120.00017 * 179.97438 * 16 15 13 36 36 H 1.08992 * 117.49917 * 0.02562 * 21 12 11 37 37 H 1.09001 * 117.49288 * 145.02004 * 21 12 11 38 38 H 1.09006 * 117.50141 * 252.51281 * 22 21 12 39 39 H 1.08998 * 117.52011 * 107.48343 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2937 2.3746 0.0005 5 6 1.9227 3.6060 0.0000 6 6 3.3032 3.6813 -0.0005 7 6 4.0617 2.5258 0.0000 8 6 3.4375 1.2869 0.0061 9 7 4.2034 0.1154 0.0120 10 6 4.9859 0.0042 1.2502 11 6 5.0746 0.0498 -1.1690 12 6 5.6007 -1.3771 -1.3361 13 6 4.6101 -2.4737 -1.0412 14 1 4.5535 -2.8979 -0.0496 15 6 3.7761 -2.9357 -2.0372 16 7 2.8780 -3.8579 -1.7679 17 14 3.9219 -2.2517 -3.7694 18 1 4.9128 -3.0499 -4.5350 19 1 2.6006 -2.3248 -4.4432 20 1 4.3681 -0.8367 -3.7069 21 6 7.0670 -1.6352 -0.9835 22 6 6.6221 -1.6278 -2.4473 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2151 2.3193 0.0014 27 1 1.3340 4.5114 0.0000 28 1 3.7901 4.6453 -0.0014 29 1 5.1400 2.5874 0.0000 30 1 4.3203 0.0875 2.1094 31 1 5.4920 -0.9609 1.2749 32 1 5.7261 0.8036 1.2853 33 1 4.5072 0.3341 -2.0552 34 1 5.9135 0.7337 -1.0399 35 1 2.2911 -4.1826 -2.4685 36 1 7.6567 -0.7886 -0.6321 37 1 7.3153 -2.5985 -0.5379 38 1 6.5777 -2.5861 -2.9648 39 1 6.9189 -0.7763 -3.0596 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259454.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:31 Heat of formation + Delta-G solvation = 18.531227 kcal Electronic energy + Delta-G solvation = -20390.074284 eV Core-core repulsion = 17491.941709 eV Total energy + Delta-G solvation = -2898.132575 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.26222 -39.41626 -38.20283 -36.46170 -34.02807 -31.05637 -30.73362 -28.64443 -28.01076 -27.36972 -25.41745 -23.26131 -22.94226 -22.08070 -20.63374 -18.95436 -18.16972 -17.25054 -17.02939 -16.84966 -16.49331 -15.68968 -15.55939 -15.35080 -15.12877 -14.76903 -14.70341 -14.23904 -13.84630 -13.41581 -13.25399 -12.99519 -12.98115 -12.69961 -12.54750 -12.28755 -12.06347 -11.97799 -11.89325 -11.71187 -11.41818 -10.86500 -10.46597 -10.16136 -9.74101 -9.01193 -8.93018 -8.10755 -6.08915 0.36297 0.57475 1.34968 1.38487 1.48998 2.47135 2.58563 2.83522 2.99463 3.26098 3.35749 3.98113 4.08513 4.19324 4.25777 4.31086 4.35364 4.38904 4.46000 4.46927 4.52098 4.57372 4.69623 4.71735 4.75171 4.85059 4.87227 4.95664 5.08797 5.14415 5.36916 5.42241 5.49372 5.55458 5.60152 5.84087 5.94228 6.30156 6.43109 6.53032 6.90315 6.96101 7.54966 9.06639 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018645 B = 0.008707 C = 0.007142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.414683 B = 3214.947914 C = 3919.546465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.324 6.324 3 C 0.119 3.881 4 C -0.212 4.212 5 C -0.084 4.084 6 C -0.150 4.150 7 C -0.121 4.121 8 C 0.034 3.966 9 N -0.496 5.496 10 C 0.052 3.948 11 C 0.114 3.886 12 C -0.020 4.020 13 C -0.430 4.430 14 H 0.028 0.972 15 C 0.022 3.978 16 N -0.954 5.954 17 Si 0.933 3.067 18 H -0.273 1.273 19 H -0.309 1.309 20 H -0.245 1.245 21 C -0.162 4.162 22 C -0.202 4.202 23 H 0.062 0.938 24 H 0.091 0.909 25 H 0.073 0.927 26 H 0.147 0.853 27 H 0.158 0.842 28 H 0.152 0.848 29 H 0.132 0.868 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.039 0.961 33 H 0.042 0.958 34 H 0.041 0.959 35 H 0.256 0.744 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.208 17.253 3.023 17.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.236 6.236 3 C 0.072 3.928 4 C -0.231 4.231 5 C -0.101 4.101 6 C -0.169 4.169 7 C -0.141 4.141 8 C -0.061 4.061 9 N -0.216 5.216 10 C -0.095 4.095 11 C -0.013 4.013 12 C -0.021 4.021 13 C -0.469 4.469 14 H 0.046 0.954 15 C -0.173 4.173 16 N -0.596 5.596 17 Si 0.760 3.240 18 H -0.199 1.199 19 H -0.237 1.237 20 H -0.168 1.168 21 C -0.199 4.199 22 C -0.239 4.239 23 H 0.081 0.919 24 H 0.110 0.890 25 H 0.092 0.908 26 H 0.165 0.835 27 H 0.176 0.824 28 H 0.170 0.830 29 H 0.150 0.850 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.121 0.879 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.566 16.522 2.942 16.792 hybrid contribution -0.078 0.039 -0.796 0.800 sum -0.644 16.562 2.147 16.713 Atomic orbital electron populations 1.23210 0.77953 1.04191 1.02009 1.86427 1.22081 1.27169 1.87958 1.19513 0.91763 0.85124 0.96351 1.21471 1.00876 0.91790 1.08991 1.21310 0.94866 0.97237 0.96732 1.21260 0.94117 0.98378 1.03110 1.21701 1.00722 0.91964 0.99689 1.18624 0.90786 0.90066 1.06583 1.59039 1.25985 1.33812 1.02731 1.22191 0.95874 1.00937 0.90472 1.21654 0.93330 0.95119 0.91148 1.19390 0.88900 0.93540 1.00255 1.20062 1.16172 1.15104 0.95518 0.95413 1.25550 0.94584 0.95015 1.02144 1.70047 1.22909 1.32524 1.34096 0.86029 0.75835 0.80937 0.81194 1.19895 1.23679 1.16819 1.22911 0.98128 1.02098 0.96736 1.23001 1.06916 1.01750 0.92266 0.91920 0.89012 0.90822 0.83489 0.82424 0.83034 0.84979 0.92740 0.92199 0.94286 0.93961 0.94155 0.93508 0.87854 0.90474 0.90989 0.88420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 9.81 113.37 1.11 1.75 16 2 O -0.32 -13.78 10.24 -93.77 -0.96 -14.74 16 3 C 0.12 4.42 6.70 22.59 0.15 4.57 16 4 C -0.21 -5.83 9.04 22.34 0.20 -5.63 16 5 C -0.08 -1.85 10.04 22.28 0.22 -1.62 16 6 C -0.15 -3.43 10.04 22.27 0.22 -3.21 16 7 C -0.12 -3.52 8.75 22.38 0.20 -3.32 16 8 C 0.03 1.28 4.63 38.22 0.18 1.45 16 9 N -0.50 -21.14 3.76 -719.57 -2.70 -23.84 16 10 C 0.05 1.93 9.11 127.69 1.16 3.09 16 11 C 0.11 4.81 4.42 86.30 0.38 5.20 16 12 C -0.02 -0.91 0.35 -52.93 -0.02 -0.93 16 13 C -0.43 -25.10 8.75 25.60 0.22 -24.88 16 14 H 0.03 1.84 8.06 -2.91 -0.02 1.81 16 15 C 0.02 1.36 5.47 84.66 0.46 1.82 16 16 N -0.95 -62.34 13.96 21.45 0.30 -62.04 16 17 Si 0.93 47.68 24.91 68.60 1.71 49.39 16 18 H -0.27 -13.31 7.10 99.48 0.71 -12.61 16 19 H -0.31 -16.10 7.11 99.48 0.71 -15.39 16 20 H -0.24 -11.63 5.55 99.48 0.55 -11.08 16 21 C -0.16 -6.28 9.67 30.59 0.30 -5.98 16 22 C -0.20 -8.33 7.46 30.59 0.23 -8.10 16 23 H 0.06 1.64 7.67 -2.39 -0.02 1.62 16 24 H 0.09 2.82 8.14 -2.38 -0.02 2.80 16 25 H 0.07 1.75 7.66 -2.39 -0.02 1.74 16 26 H 0.15 3.25 6.30 -2.91 -0.02 3.23 16 27 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 28 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 29 H 0.13 3.44 7.30 -2.91 -0.02 3.42 16 30 H 0.05 1.97 8.11 -2.39 -0.02 1.95 16 31 H 0.06 2.42 7.33 -2.38 -0.02 2.40 16 32 H 0.04 1.20 7.51 -2.39 -0.02 1.18 16 33 H 0.04 1.93 6.53 -2.39 -0.02 1.91 16 34 H 0.04 1.44 7.36 -2.39 -0.02 1.43 16 35 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 36 H 0.10 3.30 8.08 -2.39 -0.02 3.28 16 37 H 0.08 3.11 8.14 -2.39 -0.02 3.10 16 38 H 0.07 3.20 6.96 -2.38 -0.02 3.18 16 39 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 Total: -1.00 -74.06 314.57 4.23 -69.83 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.87 Total: 17.19 kcal Atomic # 6 Polarization: -40.81 SS G_CDS: 5.02 Total: -35.78 kcal Atomic # 7 Polarization: -83.47 SS G_CDS: -2.40 Total: -85.88 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.96 Total: -14.74 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 1.71 Total: 49.39 kcal Total: -74.06 4.23 -69.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259454.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.357 kcal (2) G-P(sol) polarization free energy of solvation -74.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds