Wall clock time and date at job start Mon Mar 30 2020 06:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35894 * 116.99874 * 2 1 4 4 C 1.38810 * 120.02113 * 359.97438 * 3 2 1 5 5 C 1.38170 * 120.09398 * 179.97438 * 4 3 2 6 6 C 1.38159 * 120.13049 * 0.04923 * 5 4 3 7 7 C 1.38934 * 120.03263 * 359.95215 * 6 5 4 8 8 N 1.39668 * 120.04526 * 180.02562 * 7 6 5 9 9 C 1.46504 * 119.99660 * 181.26088 * 8 7 6 10 10 C 1.46498 * 120.00289 * 1.52948 * 8 7 6 11 11 C 1.52996 * 109.47382 * 267.20094 * 10 8 7 12 12 C 1.50699 * 115.55245 * 180.33554 * 11 10 8 13 13 H 1.07999 * 120.00361 * 144.15675 * 12 11 10 14 14 C 1.37879 * 120.00105 * 324.16207 * 12 11 10 15 15 N 1.31517 * 119.99476 * 3.74205 * 14 12 11 16 16 Si 1.86794 * 120.00474 * 183.74370 * 14 12 11 17 17 H 1.48499 * 109.47320 * 89.99515 * 16 14 12 18 18 H 1.48497 * 109.47385 * 209.99981 * 16 14 12 19 19 H 1.48506 * 109.46811 * 329.99931 * 16 14 12 20 20 C 1.53003 * 117.49893 * 34.66309 * 11 10 8 21 21 C 1.53005 * 117.49821 * 326.00375 * 11 10 8 22 22 C 1.38578 * 120.01648 * 180.27787 * 3 2 1 23 23 H 1.09003 * 109.46965 * 59.99882 * 1 2 3 24 24 H 1.08999 * 109.47150 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46981 * 300.00075 * 1 2 3 26 26 H 1.08003 * 119.95334 * 0.02562 * 4 3 2 27 27 H 1.08000 * 119.93784 * 180.02562 * 5 4 3 28 28 H 1.07997 * 119.98592 * 179.97438 * 6 5 4 29 29 H 1.09006 * 109.46776 * 84.53481 * 9 8 7 30 30 H 1.08998 * 109.46773 * 204.53285 * 9 8 7 31 31 H 1.08995 * 109.47116 * 324.53417 * 9 8 7 32 32 H 1.09006 * 109.46663 * 27.19876 * 10 8 7 33 33 H 1.08999 * 109.47210 * 147.19434 * 10 8 7 34 34 H 0.96997 * 119.99792 * 185.00597 * 15 14 12 35 35 H 1.08993 * 117.50010 * 0.02562 * 20 11 10 36 36 H 1.09006 * 117.49620 * 145.02168 * 20 11 10 37 37 H 1.09000 * 117.50174 * 214.98178 * 21 11 10 38 38 H 1.09000 * 117.49792 * 359.97438 * 21 11 10 39 39 H 1.08006 * 120.06284 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2904 2.3753 -0.0005 5 6 1.9161 3.6072 0.0000 6 6 3.2955 3.6844 0.0000 7 6 4.0570 2.5224 0.0006 8 7 5.4515 2.6001 0.0011 9 6 6.2535 1.3744 -0.0262 10 6 6.1123 3.9072 0.0351 11 6 6.4037 4.3686 -1.3942 12 6 7.0935 5.7027 -1.5187 13 1 7.8218 5.8634 -2.2998 14 6 6.7950 6.7183 -0.6351 15 7 5.9637 6.5004 0.3605 16 14 7.5711 8.4034 -0.8522 17 1 6.7038 9.2397 -1.7203 18 1 7.7192 9.0548 0.4741 19 1 8.9073 8.2554 -1.4830 20 6 5.3913 3.9930 -2.4781 21 6 6.7522 3.2942 -2.4263 22 6 3.4298 1.2838 -0.0058 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2119 2.3182 -0.0005 27 1 1.3257 4.5115 0.0000 28 1 3.7821 4.6485 0.0000 29 1 6.3696 1.0392 -1.0570 30 1 7.2351 1.5728 0.4041 31 1 5.7524 0.5994 0.5536 32 1 5.4608 4.6310 0.5249 33 1 7.0477 3.8272 0.5889 34 1 5.6972 7.2322 0.9386 35 1 4.5174 3.4175 -2.1729 36 1 5.2244 4.7107 -3.2814 37 1 7.4802 3.5523 -3.1955 38 1 6.7743 2.2586 -2.0868 39 1 4.0194 0.3788 -0.0099 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259455.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:33 Heat of formation + Delta-G solvation = 33.784173 kcal Electronic energy + Delta-G solvation = -20021.656917 eV Core-core repulsion = 17124.185760 eV Total energy + Delta-G solvation = -2897.471158 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.76429 -38.29706 -36.30439 -34.11532 -32.21523 -30.24133 -29.09316 -27.51899 -26.75680 -25.62559 -23.97005 -21.68699 -21.01345 -20.39813 -18.87686 -17.51871 -16.40886 -15.82841 -15.48649 -15.44729 -14.97971 -14.73294 -14.59231 -14.01413 -13.26644 -13.03520 -12.57491 -12.26307 -12.08452 -12.03167 -11.77863 -11.51330 -11.44162 -11.06361 -10.95962 -10.88534 -10.60937 -10.42080 -10.14373 -9.99134 -9.71413 -9.07379 -8.86690 -8.70569 -8.10660 -7.79434 -6.53194 -6.08646 -4.18925 2.06725 2.20543 3.23204 3.30699 3.33632 3.48876 4.06330 4.31899 4.47629 4.97754 5.14782 5.25165 5.41755 5.45621 5.56717 5.59211 5.66010 5.88110 5.97262 6.00356 6.08629 6.20094 6.28567 6.32922 6.51227 6.57272 6.81233 6.85614 6.93153 6.98913 7.03827 7.17327 7.28771 7.31619 7.44769 7.57684 7.81866 7.95282 8.09281 8.32033 8.46937 8.81786 9.43643 10.87414 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.029495 B = 0.005609 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.090686 B = 4990.740901 C = 5457.500715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.325 6.325 3 C 0.159 3.841 4 C -0.281 4.281 5 C -0.043 4.043 6 C -0.214 4.214 7 C 0.268 3.732 8 N -0.619 5.619 9 C 0.089 3.911 10 C 0.144 3.856 11 C 0.035 3.965 12 C -0.480 4.480 13 H 0.061 0.939 14 C 0.068 3.932 15 N -0.890 5.890 16 Si 0.901 3.099 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.274 1.274 20 C -0.201 4.201 21 C -0.219 4.219 22 C -0.248 4.248 23 H 0.052 0.948 24 H 0.091 0.909 25 H 0.052 0.948 26 H 0.113 0.887 27 H 0.116 0.884 28 H 0.146 0.854 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.143 0.857 33 H 0.054 0.946 34 H 0.265 0.735 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.275 -8.622 1.389 11.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.239 6.239 3 C 0.113 3.887 4 C -0.302 4.302 5 C -0.062 4.062 6 C -0.236 4.236 7 C 0.161 3.839 8 N -0.326 5.326 9 C -0.054 4.054 10 C 0.024 3.976 11 C 0.033 3.967 12 C -0.518 4.518 13 H 0.079 0.921 14 C -0.133 4.133 15 N -0.529 5.529 16 Si 0.729 3.271 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.239 4.239 21 C -0.256 4.256 22 C -0.272 4.272 23 H 0.070 0.930 24 H 0.110 0.890 25 H 0.070 0.930 26 H 0.131 0.869 27 H 0.134 0.866 28 H 0.164 0.836 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.160 0.840 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.951 -8.694 1.605 11.247 hybrid contribution 0.120 0.928 -0.383 1.011 sum -6.832 -7.767 1.222 10.416 Atomic orbital electron populations 1.22924 0.79219 1.02936 1.01214 1.85993 1.20737 1.27960 1.89167 1.18558 0.91558 0.83418 0.95122 1.20768 0.98808 0.92461 1.18188 1.20613 0.94101 0.96281 0.95195 1.21080 0.93394 0.98732 1.10383 1.17505 0.83872 0.92440 0.90053 1.47139 1.01578 1.07169 1.76671 1.21711 0.95577 0.87668 1.00480 1.22001 0.98140 0.80706 0.96752 1.19545 0.96572 0.92635 0.87901 1.20647 1.22772 0.94965 1.13445 0.92108 1.24976 0.95055 0.99177 0.94115 1.69550 1.34698 1.31534 1.17135 0.86433 0.79664 0.83553 0.77499 1.20539 1.21052 1.19876 1.22991 0.92093 1.03566 1.05213 1.23067 0.99273 0.97573 1.05711 1.19673 0.91414 0.96845 1.19236 0.92960 0.89034 0.92974 0.86900 0.86606 0.83612 0.93545 0.91646 0.92702 0.83961 0.92785 0.92469 0.90798 0.91313 0.91472 0.90719 0.86130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.32 -5.00 10.49 -19.41 -0.20 -5.20 16 3 C 0.16 2.73 6.68 -39.24 -0.26 2.47 16 4 C -0.28 -4.59 9.04 -39.39 -0.36 -4.95 16 5 C -0.04 -0.75 10.03 -39.64 -0.40 -1.15 16 6 C -0.21 -4.30 8.03 -39.35 -0.32 -4.62 16 7 C 0.27 5.29 5.10 -83.81 -0.43 4.87 16 8 N -0.62 -12.29 2.23 -179.64 -0.40 -12.69 16 9 C 0.09 1.47 9.07 59.85 0.54 2.02 16 10 C 0.14 3.30 4.56 -4.04 -0.02 3.28 16 11 C 0.03 0.85 2.45 -155.66 -0.38 0.47 16 12 C -0.48 -12.70 9.06 -34.44 -0.31 -13.01 16 13 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 14 C 0.07 1.75 5.39 -17.82 -0.10 1.66 16 15 N -0.89 -23.08 10.23 55.43 0.57 -22.52 16 16 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 C -0.20 -4.68 9.38 -26.69 -0.25 -4.93 16 21 C -0.22 -4.86 9.57 -26.69 -0.26 -5.11 16 22 C -0.25 -4.54 9.15 -39.24 -0.36 -4.90 16 23 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 24 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 26 H 0.11 1.54 6.29 -52.48 -0.33 1.21 16 27 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 28 H 0.15 3.30 6.11 -52.49 -0.32 2.98 16 29 H 0.05 0.76 6.12 -51.93 -0.32 0.44 16 30 H 0.06 1.02 7.85 -51.93 -0.41 0.61 16 31 H 0.05 0.81 6.47 -51.93 -0.34 0.47 16 32 H 0.14 3.52 3.52 -51.93 -0.18 3.33 16 33 H 0.05 1.26 7.90 -51.93 -0.41 0.85 16 34 H 0.26 6.58 8.32 -40.82 -0.34 6.24 16 35 H 0.07 1.71 5.31 -51.93 -0.28 1.43 16 36 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 37 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 38 H 0.07 1.53 4.65 -51.93 -0.24 1.29 16 39 H 0.12 2.07 6.24 -52.48 -0.33 1.74 16 LS Contribution 305.52 15.07 4.60 4.60 Total: -1.00 -27.23 305.52 -7.53 -34.77 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -5.18 Total: 8.35 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: -1.90 Total: -22.56 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.17 Total: -35.21 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.20 Total: -5.20 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.23 -7.53 -34.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259455.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.551 kcal (2) G-P(sol) polarization free energy of solvation -27.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds