Wall clock time and date at job start Mon Mar 30 2020 06:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36011 * 116.99431 * 2 1 4 4 C 1.38705 * 119.97352 * 179.97438 * 3 2 1 5 5 C 1.38116 * 120.01290 * 180.02562 * 4 3 2 6 6 C 1.38858 * 119.98340 * 359.97438 * 5 4 3 7 7 N 1.39934 * 120.01984 * 179.97438 * 6 5 4 8 8 C 1.46494 * 120.00052 * 4.75092 * 7 6 5 9 9 C 1.46501 * 119.99814 * 184.75638 * 7 6 5 10 10 C 1.53002 * 109.46797 * 265.25421 * 9 7 6 11 11 C 1.50704 * 115.54744 * 185.43956 * 10 9 7 12 12 H 1.08001 * 119.99794 * 144.08569 * 11 10 9 13 13 C 1.37881 * 119.99800 * 324.07798 * 11 10 9 14 14 N 1.31503 * 120.00097 * 353.78088 * 13 11 10 15 15 Si 1.86806 * 119.99665 * 173.77874 * 13 11 10 16 16 H 1.48500 * 109.47257 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46846 * 120.00354 * 15 13 11 18 18 H 1.48505 * 109.46847 * 240.00191 * 15 13 11 19 19 C 1.53001 * 117.50078 * 39.77055 * 10 9 7 20 20 C 1.53002 * 117.50069 * 331.10663 * 10 9 7 21 21 C 1.38863 * 119.95769 * 0.27064 * 6 5 4 22 22 C 1.38103 * 119.98490 * 359.44834 * 21 6 5 23 23 H 1.09000 * 109.47190 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47567 * 299.99721 * 1 2 3 25 25 H 1.09002 * 109.47177 * 60.00235 * 1 2 3 26 26 H 1.08000 * 119.99367 * 0.02562 * 4 3 2 27 27 H 1.07998 * 120.00315 * 179.97438 * 5 4 3 28 28 H 1.08999 * 109.47575 * 276.15311 * 8 7 6 29 29 H 1.09007 * 109.46907 * 36.15622 * 8 7 6 30 30 H 1.09003 * 109.47270 * 156.15020 * 8 7 6 31 31 H 1.08998 * 109.47564 * 25.25400 * 9 7 6 32 32 H 1.09005 * 109.47330 * 145.25663 * 9 7 6 33 33 H 0.97000 * 120.00263 * 185.01521 * 14 13 11 34 34 H 1.09001 * 117.49687 * 359.97438 * 19 10 9 35 35 H 1.08997 * 117.50115 * 145.01693 * 19 10 9 36 36 H 1.08998 * 117.49824 * 214.97711 * 20 10 9 37 37 H 1.08995 * 117.49717 * 359.97438 * 20 10 9 38 38 H 1.08001 * 120.00648 * 179.70414 * 21 6 5 39 39 H 1.08007 * 119.99673 * 180.27380 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2119 0.0000 4 6 3.4315 1.2840 0.0005 5 6 4.0592 2.5143 0.0011 6 6 3.3033 3.6791 0.0005 7 7 3.9386 4.9259 0.0016 8 6 5.3977 5.0047 -0.1018 9 6 3.1443 6.1525 0.1063 10 6 2.8632 6.6991 -1.2949 11 6 2.1617 8.0320 -1.3439 12 1 2.4101 8.7448 -2.1163 13 6 1.2027 8.3413 -0.4028 14 7 0.8122 7.4307 0.4619 15 14 0.4581 10.0539 -0.3561 16 1 1.0627 10.8859 -1.4273 17 1 -1.0086 9.9620 -0.5696 18 1 0.7280 10.6751 0.9656 19 6 2.5359 5.6876 -2.3952 20 6 3.8905 6.4007 -2.3888 21 6 1.9166 3.6058 0.0051 22 6 1.2905 2.3749 -0.0013 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 4.0193 0.3780 0.0005 27 1 5.1378 2.5702 0.0019 28 1 5.8395 4.8756 0.8863 29 1 5.7578 4.2192 -0.7663 30 1 5.6816 5.9778 -0.5024 31 1 2.2012 5.9331 0.6066 32 1 3.6969 6.8952 0.6819 33 1 0.0870 7.6245 1.0762 34 1 2.5213 4.6328 -2.1210 35 1 1.8136 5.9863 -3.1548 36 1 4.0586 7.1683 -3.1442 37 1 4.7668 5.8155 -2.1102 38 1 1.3279 4.5112 0.0096 39 1 0.2119 2.3177 -0.0022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259456.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:35 Heat of formation + Delta-G solvation = 31.978222 kcal Electronic energy + Delta-G solvation = -19992.368806 eV Core-core repulsion = 17094.819336 eV Total energy + Delta-G solvation = -2897.549470 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.71477 -38.25619 -36.31741 -33.93732 -32.18479 -30.69471 -28.85169 -27.59155 -26.78548 -25.56482 -23.69273 -21.88301 -21.02812 -20.38670 -18.78335 -17.75319 -16.38770 -16.12684 -15.61447 -15.35452 -14.67428 -14.63457 -14.23987 -14.01353 -13.13533 -13.04642 -12.66702 -12.31337 -12.20107 -12.12844 -11.76521 -11.53460 -11.41152 -11.23569 -11.03644 -10.90468 -10.67050 -10.43148 -10.06800 -9.97219 -9.67320 -9.06039 -8.81808 -8.50626 -8.44428 -8.05023 -6.30677 -6.13106 -4.17469 1.89846 2.20529 3.20737 3.30091 3.34149 3.70208 3.99900 4.30974 4.41681 4.96390 5.22815 5.35389 5.35638 5.44951 5.57464 5.60924 5.65661 5.84922 5.87557 5.95138 6.10164 6.20125 6.25310 6.36795 6.51864 6.55645 6.60502 6.76292 6.91371 6.96336 7.02010 7.11797 7.21146 7.27214 7.43267 7.53686 7.82705 7.90526 8.08314 8.33430 8.45583 8.81817 9.43207 10.88384 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.022463 B = 0.006056 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.214671 B = 4622.108989 C = 5356.426957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.329 6.329 3 C 0.046 3.954 4 C -0.108 4.108 5 C -0.178 4.178 6 C 0.203 3.797 7 N -0.627 5.627 8 C 0.095 3.905 9 C 0.153 3.847 10 C 0.036 3.964 11 C -0.484 4.484 12 H 0.061 0.939 13 C 0.068 3.932 14 N -0.889 5.889 15 Si 0.898 3.102 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.282 1.282 19 C -0.200 4.200 20 C -0.216 4.216 21 C -0.146 4.146 22 C -0.157 4.157 23 H 0.090 0.910 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.036 0.964 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.128 0.872 32 H 0.053 0.947 33 H 0.264 0.736 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.147 0.853 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.585 -9.502 0.965 9.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.243 6.243 3 C 0.001 3.999 4 C -0.128 4.128 5 C -0.202 4.202 6 C 0.099 3.901 7 N -0.336 5.336 8 C -0.049 4.049 9 C 0.032 3.968 10 C 0.035 3.965 11 C -0.522 4.522 12 H 0.079 0.921 13 C -0.134 4.134 14 N -0.527 5.527 15 Si 0.726 3.274 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.208 1.208 19 C -0.238 4.238 20 C -0.254 4.254 21 C -0.168 4.168 22 C -0.176 4.176 23 H 0.108 0.892 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.137 0.863 27 H 0.138 0.862 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.145 0.855 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.165 0.835 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.678 -9.470 1.180 9.912 hybrid contribution -0.663 1.052 -0.205 1.260 sum 2.015 -8.418 0.975 8.711 Atomic orbital electron populations 1.22885 0.79576 1.02796 1.01110 1.85978 1.20365 1.27550 1.90432 1.18691 0.92127 0.83728 1.05387 1.19963 0.91107 0.97355 1.04334 1.20391 0.99009 0.90606 1.10145 1.17827 0.91689 0.85571 0.94973 1.46974 1.04705 1.03867 1.78095 1.21579 0.81740 1.01988 0.99584 1.21546 0.96430 0.82056 0.96745 1.19523 0.95447 0.94194 0.87381 1.20648 1.20610 0.98765 1.12156 0.92083 1.24980 0.96318 0.97306 0.94777 1.69689 1.27987 1.33368 1.21639 0.86422 0.78825 0.84127 0.78004 1.19770 1.20946 1.20792 1.22977 0.97305 0.97560 1.05976 1.23001 0.92967 1.03787 1.05597 1.20959 0.93145 0.98376 1.04347 1.20983 0.99286 0.91895 1.05470 0.89180 0.93148 0.93127 0.86327 0.86181 0.94573 0.92893 0.91114 0.85453 0.92843 0.92604 0.90874 0.91332 0.91487 0.90810 0.83543 0.86218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.33 -5.09 10.50 -19.77 -0.21 -5.30 16 3 C 0.05 0.78 6.69 -39.24 -0.26 0.52 16 4 C -0.11 -1.77 9.98 -39.45 -0.39 -2.16 16 5 C -0.18 -3.01 9.17 -39.40 -0.36 -3.37 16 6 C 0.20 3.87 5.39 -83.70 -0.45 3.42 16 7 N -0.63 -12.13 2.24 -179.57 -0.40 -12.53 16 8 C 0.09 1.51 8.19 59.84 0.49 2.00 16 9 C 0.15 3.46 4.46 -4.04 -0.02 3.44 16 10 C 0.04 0.87 2.38 -155.66 -0.37 0.50 16 11 C -0.48 -12.75 9.05 -34.44 -0.31 -13.06 16 12 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 13 C 0.07 1.76 5.31 -17.82 -0.09 1.67 16 14 N -0.89 -23.16 10.60 55.43 0.59 -22.58 16 15 Si 0.90 20.25 29.55 -169.99 -5.02 15.23 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 C -0.20 -4.63 9.45 -26.69 -0.25 -4.88 16 20 C -0.22 -4.72 9.33 -26.69 -0.25 -4.97 16 21 C -0.15 -2.88 7.66 -39.40 -0.30 -3.19 16 22 C -0.16 -2.76 9.03 -39.46 -0.36 -3.12 16 23 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.05 0.55 7.66 -51.93 -0.40 0.16 16 25 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 26 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 27 H 0.12 1.77 6.41 -52.49 -0.34 1.44 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.76 6.78 -51.93 -0.35 0.41 16 30 H 0.07 1.13 6.84 -51.93 -0.36 0.78 16 31 H 0.13 3.13 3.92 -51.93 -0.20 2.92 16 32 H 0.05 1.24 8.11 -51.93 -0.42 0.82 16 33 H 0.26 6.58 8.32 -40.82 -0.34 6.24 16 34 H 0.07 1.66 5.27 -51.93 -0.27 1.39 16 35 H 0.07 1.63 8.14 -51.93 -0.42 1.20 16 36 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 37 H 0.07 1.47 4.98 -51.93 -0.26 1.21 16 38 H 0.15 3.26 6.16 -52.49 -0.32 2.94 16 39 H 0.12 1.87 6.29 -52.48 -0.33 1.54 16 LS Contribution 306.95 15.07 4.63 4.63 Total: -1.00 -27.17 306.95 -7.67 -34.84 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -5.31 Total: 7.55 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -1.94 Total: -21.84 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.18 Total: -35.11 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.21 Total: -5.30 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.17 -7.67 -34.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259456.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.817 kcal (2) G-P(sol) polarization free energy of solvation -27.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds