Wall clock time and date at job start Mon Mar 30 2020 06:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36011 * 116.99431 * 2 1 4 4 C 1.38705 * 119.97352 * 179.97438 * 3 2 1 5 5 C 1.38116 * 120.01290 * 180.02562 * 4 3 2 6 6 C 1.38858 * 119.98340 * 359.97438 * 5 4 3 7 7 N 1.39934 * 120.01984 * 179.97438 * 6 5 4 8 8 C 1.46494 * 120.00052 * 4.75092 * 7 6 5 9 9 C 1.46501 * 119.99814 * 184.75638 * 7 6 5 10 10 C 1.53002 * 109.46797 * 265.25421 * 9 7 6 11 11 C 1.50704 * 115.54744 * 185.43956 * 10 9 7 12 12 H 1.08001 * 119.99794 * 144.08569 * 11 10 9 13 13 C 1.37881 * 119.99800 * 324.07798 * 11 10 9 14 14 N 1.31503 * 120.00097 * 353.78088 * 13 11 10 15 15 Si 1.86806 * 119.99665 * 173.77874 * 13 11 10 16 16 H 1.48500 * 109.47257 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46846 * 120.00354 * 15 13 11 18 18 H 1.48505 * 109.46847 * 240.00191 * 15 13 11 19 19 C 1.53001 * 117.50078 * 39.77055 * 10 9 7 20 20 C 1.53002 * 117.50069 * 331.10663 * 10 9 7 21 21 C 1.38863 * 119.95769 * 0.27064 * 6 5 4 22 22 C 1.38103 * 119.98490 * 359.44834 * 21 6 5 23 23 H 1.09000 * 109.47190 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47567 * 299.99721 * 1 2 3 25 25 H 1.09002 * 109.47177 * 60.00235 * 1 2 3 26 26 H 1.08000 * 119.99367 * 0.02562 * 4 3 2 27 27 H 1.07998 * 120.00315 * 179.97438 * 5 4 3 28 28 H 1.08999 * 109.47575 * 276.15311 * 8 7 6 29 29 H 1.09007 * 109.46907 * 36.15622 * 8 7 6 30 30 H 1.09003 * 109.47270 * 156.15020 * 8 7 6 31 31 H 1.08998 * 109.47564 * 25.25400 * 9 7 6 32 32 H 1.09005 * 109.47330 * 145.25663 * 9 7 6 33 33 H 0.97000 * 120.00263 * 185.01521 * 14 13 11 34 34 H 1.09001 * 117.49687 * 359.97438 * 19 10 9 35 35 H 1.08997 * 117.50115 * 145.01693 * 19 10 9 36 36 H 1.08998 * 117.49824 * 214.97711 * 20 10 9 37 37 H 1.08995 * 117.49717 * 359.97438 * 20 10 9 38 38 H 1.08001 * 120.00648 * 179.70414 * 21 6 5 39 39 H 1.08007 * 119.99673 * 180.27380 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2119 0.0000 4 6 3.4315 1.2840 0.0005 5 6 4.0592 2.5143 0.0011 6 6 3.3033 3.6791 0.0005 7 7 3.9386 4.9259 0.0016 8 6 5.3977 5.0047 -0.1018 9 6 3.1443 6.1525 0.1063 10 6 2.8632 6.6991 -1.2949 11 6 2.1617 8.0320 -1.3439 12 1 2.4101 8.7448 -2.1163 13 6 1.2027 8.3413 -0.4028 14 7 0.8122 7.4307 0.4619 15 14 0.4581 10.0539 -0.3561 16 1 1.0627 10.8859 -1.4273 17 1 -1.0086 9.9620 -0.5696 18 1 0.7280 10.6751 0.9656 19 6 2.5359 5.6876 -2.3952 20 6 3.8905 6.4007 -2.3888 21 6 1.9166 3.6058 0.0051 22 6 1.2905 2.3749 -0.0013 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 4.0193 0.3780 0.0005 27 1 5.1378 2.5702 0.0019 28 1 5.8395 4.8756 0.8863 29 1 5.7578 4.2192 -0.7663 30 1 5.6816 5.9778 -0.5024 31 1 2.2012 5.9331 0.6066 32 1 3.6969 6.8952 0.6819 33 1 0.0870 7.6245 1.0762 34 1 2.5213 4.6328 -2.1210 35 1 1.8136 5.9863 -3.1548 36 1 4.0586 7.1683 -3.1442 37 1 4.7668 5.8155 -2.1102 38 1 1.3279 4.5112 0.0096 39 1 0.2119 2.3177 -0.0022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259456.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:35 Heat of formation + Delta-G solvation = 18.855241 kcal Electronic energy + Delta-G solvation = -19992.937861 eV Core-core repulsion = 17094.819336 eV Total energy + Delta-G solvation = -2898.118525 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.05745 -39.69540 -37.84249 -35.44660 -34.14085 -32.04467 -30.17535 -29.02813 -28.06602 -27.41979 -25.13572 -23.28133 -22.81120 -21.80481 -20.56180 -19.02592 -18.28170 -17.48796 -17.04632 -16.50655 -16.46730 -16.24411 -15.56107 -15.44324 -14.74715 -14.44963 -14.10269 -13.75173 -13.57853 -13.45217 -13.42353 -13.16902 -12.86207 -12.80002 -12.58320 -12.42546 -12.24947 -12.12456 -11.73598 -11.47793 -11.37168 -10.98057 -10.64591 -9.98962 -9.92095 -9.79854 -8.08958 -7.72683 -6.20842 0.53864 0.83904 1.40309 1.44379 1.54454 2.38551 2.51514 2.65233 3.00969 3.04817 3.67939 4.02507 4.10308 4.37301 4.37743 4.39933 4.45641 4.54558 4.57602 4.66966 4.67209 4.73233 4.77291 4.82677 4.92154 5.03586 5.12989 5.14881 5.22855 5.31106 5.42744 5.51105 5.60021 5.65698 5.68040 5.85049 6.00198 6.34329 6.59512 6.63325 6.86161 6.92885 7.41929 8.90262 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.022463 B = 0.006056 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.214671 B = 4622.108989 C = 5356.426957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.336 6.336 3 C 0.047 3.953 4 C -0.108 4.108 5 C -0.169 4.169 6 C 0.184 3.816 7 N -0.633 5.633 8 C 0.091 3.909 9 C 0.171 3.829 10 C 0.014 3.986 11 C -0.511 4.511 12 H 0.049 0.951 13 C 0.029 3.971 14 N -0.903 5.903 15 Si 0.957 3.043 16 H -0.273 1.273 17 H -0.281 1.281 18 H -0.277 1.277 19 C -0.200 4.200 20 C -0.196 4.196 21 C -0.168 4.168 22 C -0.162 4.162 23 H 0.121 0.879 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.146 0.854 27 H 0.146 0.854 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.037 0.963 33 H 0.264 0.736 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.523 -10.960 0.999 11.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.251 6.251 3 C 0.001 3.999 4 C -0.127 4.127 5 C -0.191 4.191 6 C 0.082 3.918 7 N -0.344 5.344 8 C -0.051 4.051 9 C 0.048 3.952 10 C 0.013 3.987 11 C -0.549 4.549 12 H 0.067 0.933 13 C -0.171 4.171 14 N -0.541 5.541 15 Si 0.783 3.217 16 H -0.198 1.198 17 H -0.207 1.207 18 H -0.202 1.202 19 C -0.238 4.238 20 C -0.233 4.233 21 C -0.191 4.191 22 C -0.182 4.182 23 H 0.139 0.861 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.164 0.836 27 H 0.164 0.836 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.115 0.885 38 H 0.130 0.870 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.624 -10.956 1.211 11.603 hybrid contribution -1.006 1.390 -0.214 1.729 sum 2.619 -9.566 0.996 9.968 Atomic orbital electron populations 1.23182 0.77615 1.05008 1.01382 1.85975 1.22402 1.26579 1.90145 1.18854 0.92684 0.83957 1.04422 1.20337 0.91163 0.98208 1.02975 1.20647 1.00170 0.89741 1.08576 1.18007 0.91612 0.86159 0.96067 1.46853 1.05779 1.02883 1.78880 1.21744 0.79650 1.02577 1.01163 1.21016 0.95779 0.83008 0.95392 1.19618 0.96788 0.93693 0.88627 1.20871 1.21716 0.99894 1.12434 0.93282 1.25626 0.96647 1.00358 0.94473 1.69843 1.27986 1.34544 1.21691 0.85524 0.77939 0.80297 0.77963 1.19757 1.20716 1.20246 1.22855 0.98053 0.97562 1.05282 1.23024 0.92972 1.03194 1.04123 1.20760 0.93688 0.97871 1.06785 1.21079 1.00067 0.91592 1.05432 0.86073 0.92775 0.92965 0.83608 0.83591 0.92813 0.90791 0.91499 0.87730 0.94466 0.92592 0.90548 0.92805 0.91575 0.88520 0.86998 0.85184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.81 113.37 1.11 1.59 16 2 O -0.34 -9.62 10.50 -93.67 -0.98 -10.61 16 3 C 0.05 1.50 6.69 22.49 0.15 1.65 16 4 C -0.11 -3.21 9.98 22.35 0.22 -2.99 16 5 C -0.17 -5.25 9.17 22.39 0.21 -5.04 16 6 C 0.18 6.89 5.39 38.15 0.21 7.09 16 7 N -0.63 -24.17 2.24 -722.02 -1.62 -25.79 16 8 C 0.09 2.71 8.19 127.77 1.05 3.76 16 9 C 0.17 7.91 4.46 86.38 0.38 8.29 16 10 C 0.01 0.70 2.38 -52.92 -0.13 0.58 16 11 C -0.51 -27.63 9.05 25.60 0.23 -27.40 16 12 H 0.05 2.68 7.82 -2.91 -0.02 2.66 16 13 C 0.03 1.55 5.31 84.66 0.45 2.00 16 14 N -0.90 -48.43 10.60 21.45 0.23 -48.20 16 15 Si 0.96 42.15 29.55 68.60 2.03 44.17 16 16 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 17 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 19 C -0.20 -9.36 9.45 30.62 0.29 -9.07 16 20 C -0.20 -8.47 9.33 30.62 0.29 -8.19 16 21 C -0.17 -6.78 7.66 22.39 0.17 -6.61 16 22 C -0.16 -5.67 9.03 22.35 0.20 -5.46 16 23 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.05 1.10 7.66 -2.39 -0.02 1.08 16 25 H 0.05 1.08 7.66 -2.39 -0.02 1.06 16 26 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 27 H 0.15 3.72 6.41 -2.91 -0.02 3.70 16 28 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.07 1.88 6.78 -2.38 -0.02 1.86 16 30 H 0.07 2.03 6.84 -2.39 -0.02 2.01 16 31 H 0.11 5.37 3.92 -2.39 -0.01 5.36 16 32 H 0.04 1.78 8.11 -2.38 -0.02 1.76 16 33 H 0.26 13.52 8.32 -92.71 -0.77 12.75 16 34 H 0.08 3.51 5.27 -2.39 -0.01 3.50 16 35 H 0.05 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 37 H 0.10 3.69 4.98 -2.39 -0.01 3.68 16 38 H 0.11 5.28 6.16 -2.91 -0.02 5.27 16 39 H 0.13 4.08 6.29 -2.91 -0.02 4.06 16 Total: -1.00 -58.80 306.95 5.53 -53.27 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 1.05 Total: 26.95 kcal Atomic # 6 Polarization: -44.63 SS G_CDS: 4.83 Total: -39.80 kcal Atomic # 7 Polarization: -72.59 SS G_CDS: -1.39 Total: -73.99 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: -0.98 Total: -10.61 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -58.80 5.53 -53.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259456.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.124 kcal (2) G-P(sol) polarization free energy of solvation -58.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds