Wall clock time and date at job start Mon Mar 30 2020 07:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.47032 * 2 1 4 4 C 1.38115 * 120.40162 * 125.00160 * 3 2 1 5 5 C 1.39623 * 118.33764 * 180.02562 * 4 3 2 6 6 N 1.38548 * 120.53408 * 179.97438 * 5 4 3 7 7 C 1.46502 * 119.99866 * 188.78254 * 6 5 4 8 8 C 1.50695 * 109.47079 * 269.99903 * 7 6 5 9 9 H 1.08009 * 120.00068 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00391 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99419 * 0.02562 * 10 8 7 12 12 Si 1.86791 * 120.00479 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47114 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47033 * 120.00362 * 12 10 8 15 15 H 1.48495 * 109.47649 * 239.99953 * 12 10 8 16 16 C 1.46497 * 119.99722 * 8.78679 * 6 5 4 17 17 C 1.53001 * 117.51855 * 167.22153 * 16 6 5 18 18 C 1.53004 * 60.00094 * 107.48091 * 17 16 6 19 19 N 1.32992 * 118.93620 * 0.25724 * 5 4 3 20 20 C 1.31752 * 120.68647 * 359.48288 * 19 5 4 21 21 C 1.50693 * 119.08413 * 180.26649 * 20 19 5 22 22 N 1.31796 * 121.82912 * 0.53053 * 20 19 5 23 23 H 1.09004 * 109.46998 * 299.99272 * 1 2 3 24 24 H 1.08995 * 109.47299 * 59.99788 * 1 2 3 25 25 H 1.09007 * 109.46963 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46998 * 240.00728 * 2 1 3 27 27 H 1.09001 * 109.47624 * 120.00519 * 2 1 3 28 28 H 1.08002 * 120.83097 * 0.04936 * 4 3 2 29 29 H 1.08998 * 109.47274 * 30.00275 * 7 6 5 30 30 H 1.09002 * 109.46814 * 150.00305 * 7 6 5 31 31 H 0.97001 * 119.99878 * 179.97438 * 11 10 8 32 32 H 1.08997 * 115.55354 * 21.51833 * 16 6 5 33 33 H 1.08999 * 117.50185 * 214.97044 * 17 16 6 34 34 H 1.09002 * 117.49523 * 359.97438 * 17 16 6 35 35 H 1.09007 * 117.49365 * 252.51288 * 18 17 16 36 36 H 1.08997 * 117.49940 * 107.48992 * 18 17 16 37 37 H 1.09004 * 109.46890 * 270.25346 * 21 20 19 38 38 H 1.08995 * 109.47317 * 30.25251 * 21 20 19 39 39 H 1.08998 * 109.47148 * 150.26046 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9095 1.8520 0.9758 5 6 3.3469 3.1773 0.9349 6 7 4.2265 3.6580 1.8913 7 6 4.5285 5.0902 1.9549 8 6 5.7144 5.3930 1.0759 9 1 6.1950 4.5981 0.5246 10 6 6.1862 6.6846 0.9753 11 7 5.6013 7.6523 1.6470 12 14 7.6566 7.0598 -0.1138 13 1 8.1293 5.8072 -0.7563 14 1 7.2604 8.0343 -1.1620 15 1 8.7489 7.6365 0.7105 16 6 4.8547 2.7341 2.8390 17 6 6.0289 3.2605 3.6666 18 6 4.6718 3.0199 4.3309 19 7 2.9013 3.9724 -0.0335 20 6 2.0684 3.5173 -0.9473 21 6 1.5910 4.4481 -2.0320 22 7 1.6372 2.2719 -0.9361 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.2488 1.1807 1.7508 29 1 3.6654 5.6591 1.6094 30 1 4.7585 5.3676 2.9836 31 1 5.9334 8.5610 1.5765 32 1 4.8869 1.6903 2.5268 33 1 6.8337 2.5630 3.8989 34 1 6.3346 4.2943 3.5058 35 1 4.0845 3.8957 4.6073 36 1 4.5837 2.1641 5.0002 37 1 0.6822 4.9526 -1.7038 38 1 2.3628 5.1890 -2.2406 39 1 1.3826 3.8760 -2.9360 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088759992.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:57 Heat of formation + Delta-G solvation = 71.141143 kcal Electronic energy + Delta-G solvation = -19681.713052 eV Core-core repulsion = 16818.154565 eV Total energy + Delta-G solvation = -2863.558487 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.41086 -37.88705 -34.93577 -33.99546 -32.83290 -30.84929 -30.63894 -28.26176 -26.92460 -24.34767 -23.02072 -22.49274 -21.89700 -20.96829 -19.30041 -17.07180 -16.84114 -16.35178 -15.04054 -14.82113 -14.69105 -14.53818 -14.07762 -13.91733 -13.53655 -12.92976 -12.79769 -12.42125 -12.25118 -11.95003 -11.77722 -11.48634 -11.32960 -11.28724 -11.02092 -10.92539 -10.74930 -10.56812 -10.16341 -10.08602 -9.95307 -9.77483 -9.42585 -8.89474 -8.45273 -8.37609 -7.01421 -6.03571 -4.08651 1.65545 2.03588 3.28187 3.36202 3.39967 3.54985 4.23057 4.41773 4.48269 4.56719 4.78799 5.10157 5.22859 5.27634 5.30165 5.31325 5.40009 5.43047 5.54129 5.78373 5.84626 5.92041 5.93956 5.95829 5.97478 6.03931 6.12686 6.27330 6.35136 6.36817 6.44140 6.71471 6.86117 7.10286 7.39942 7.60897 7.85920 8.12750 8.21330 8.26493 8.93570 9.05834 9.55222 11.02545 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018546 B = 0.006668 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.433327 B = 4197.843039 C = 5253.577725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.068 4.068 3 C 0.195 3.805 4 C -0.312 4.312 5 C 0.454 3.546 6 N -0.548 5.548 7 C 0.252 3.748 8 C -0.513 4.513 9 H 0.056 0.944 10 C 0.062 3.938 11 N -0.896 5.896 12 Si 0.895 3.105 13 H -0.275 1.275 14 H -0.283 1.283 15 H -0.284 1.284 16 C 0.088 3.912 17 C -0.175 4.175 18 C -0.201 4.201 19 N -0.552 5.552 20 C 0.353 3.647 21 C -0.080 4.080 22 N -0.577 5.577 23 H 0.050 0.950 24 H 0.066 0.934 25 H 0.054 0.946 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.131 0.869 29 H 0.046 0.954 30 H 0.032 0.968 31 H 0.262 0.738 32 H 0.116 0.884 33 H 0.093 0.907 34 H 0.120 0.880 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.111 -12.336 0.237 13.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.106 4.106 3 C 0.052 3.948 4 C -0.341 4.341 5 C 0.209 3.791 6 N -0.254 5.254 7 C 0.133 3.867 8 C -0.552 4.552 9 H 0.074 0.926 10 C -0.140 4.140 11 N -0.535 5.535 12 Si 0.723 3.277 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.211 1.211 16 C -0.019 4.019 17 C -0.212 4.212 18 C -0.240 4.240 19 N -0.276 5.276 20 C 0.083 3.917 21 C -0.138 4.138 22 N -0.300 5.300 23 H 0.069 0.931 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.148 0.852 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.134 0.866 33 H 0.111 0.889 34 H 0.138 0.862 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.251 -11.424 -0.256 13.025 hybrid contribution 1.306 -0.163 0.196 1.331 sum -4.945 -11.587 -0.060 12.598 Atomic orbital electron populations 1.21628 0.94249 1.01175 1.02724 1.20413 0.96842 0.90668 1.02698 1.21099 0.89855 0.95331 0.88495 1.21882 1.08865 0.97400 1.05999 1.18465 0.86149 0.87979 0.86468 1.46569 1.41266 1.09327 1.28256 1.19349 0.97358 0.72773 0.97218 1.21390 1.13228 0.93529 1.27027 0.92591 1.24891 0.97222 0.96015 0.95854 1.69941 1.40961 1.00681 1.41959 0.86490 0.82415 0.78306 0.80497 1.19931 1.20909 1.21064 1.21386 1.00551 0.93461 0.86461 1.23395 0.91107 1.04645 1.02100 1.23418 1.01226 1.03532 0.95860 1.67985 1.16434 1.38417 1.04809 1.22845 0.87560 0.88991 0.92258 1.20462 1.01818 0.97142 0.94400 1.67934 1.30201 1.04262 1.27555 0.93051 0.91493 0.92711 0.90162 0.90670 0.85155 0.93628 0.94974 0.92846 0.86610 0.88857 0.86194 0.88667 0.88929 0.90320 0.89723 0.90396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.78 37.16 0.36 -1.19 16 2 C -0.07 -0.83 6.36 -27.89 -0.18 -1.01 16 3 C 0.19 3.25 6.20 -82.33 -0.51 2.74 16 4 C -0.31 -5.57 8.95 -39.11 -0.35 -5.92 16 5 C 0.45 9.74 7.36 -154.77 -1.14 8.60 16 6 N -0.55 -11.89 2.91 -167.44 -0.49 -12.38 16 7 C 0.25 6.42 4.40 -5.19 -0.02 6.40 16 8 C -0.51 -14.15 8.96 -34.44 -0.31 -14.45 16 9 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 10 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 11 N -0.90 -26.00 13.29 55.43 0.74 -25.27 16 12 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 13 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 C 0.09 1.53 5.94 -67.93 -0.40 1.13 16 17 C -0.17 -2.93 9.72 -26.73 -0.26 -3.19 16 18 C -0.20 -3.08 10.03 -26.73 -0.27 -3.35 16 19 N -0.55 -12.53 9.27 -9.96 -0.09 -12.62 16 20 C 0.35 6.93 7.64 -157.23 -1.20 5.72 16 21 C -0.08 -1.25 10.32 36.00 0.37 -0.87 16 22 N -0.58 -10.52 9.93 -7.07 -0.07 -10.59 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.81 7.98 -51.93 -0.41 0.40 16 25 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 26 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.07 0.77 7.93 -51.93 -0.41 0.36 16 28 H 0.13 1.97 6.35 -52.49 -0.33 1.64 16 29 H 0.05 1.30 7.55 -51.93 -0.39 0.91 16 30 H 0.03 0.84 6.26 -51.93 -0.32 0.52 16 31 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.12 1.75 6.60 -51.93 -0.34 1.41 16 33 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.12 2.43 6.29 -51.93 -0.33 2.10 16 35 H 0.09 1.60 7.88 -51.92 -0.41 1.19 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 325.47 15.07 4.90 4.90 Total: -1.00 -31.03 325.47 -9.91 -40.94 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -5.88 Total: 2.08 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -4.00 Total: -3.76 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: 0.09 Total: -60.86 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.03 -9.91 -40.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088759992.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.086 kcal (2) G-P(sol) polarization free energy of solvation -31.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds