Wall clock time and date at job start Mon Mar 30 2020 07:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.47032 * 2 1 4 4 C 1.38115 * 120.40162 * 125.00160 * 3 2 1 5 5 C 1.39623 * 118.33764 * 180.02562 * 4 3 2 6 6 N 1.38548 * 120.53408 * 179.97438 * 5 4 3 7 7 C 1.46502 * 119.99866 * 188.78254 * 6 5 4 8 8 C 1.50695 * 109.47079 * 269.99903 * 7 6 5 9 9 H 1.08009 * 120.00068 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00391 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99419 * 0.02562 * 10 8 7 12 12 Si 1.86791 * 120.00479 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47114 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47033 * 120.00362 * 12 10 8 15 15 H 1.48495 * 109.47649 * 239.99953 * 12 10 8 16 16 C 1.46497 * 119.99722 * 8.78679 * 6 5 4 17 17 C 1.53001 * 117.51855 * 167.22153 * 16 6 5 18 18 C 1.53004 * 60.00094 * 107.48091 * 17 16 6 19 19 N 1.32992 * 118.93620 * 0.25724 * 5 4 3 20 20 C 1.31752 * 120.68647 * 359.48288 * 19 5 4 21 21 C 1.50693 * 119.08413 * 180.26649 * 20 19 5 22 22 N 1.31796 * 121.82912 * 0.53053 * 20 19 5 23 23 H 1.09004 * 109.46998 * 299.99272 * 1 2 3 24 24 H 1.08995 * 109.47299 * 59.99788 * 1 2 3 25 25 H 1.09007 * 109.46963 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46998 * 240.00728 * 2 1 3 27 27 H 1.09001 * 109.47624 * 120.00519 * 2 1 3 28 28 H 1.08002 * 120.83097 * 0.04936 * 4 3 2 29 29 H 1.08998 * 109.47274 * 30.00275 * 7 6 5 30 30 H 1.09002 * 109.46814 * 150.00305 * 7 6 5 31 31 H 0.97001 * 119.99878 * 179.97438 * 11 10 8 32 32 H 1.08997 * 115.55354 * 21.51833 * 16 6 5 33 33 H 1.08999 * 117.50185 * 214.97044 * 17 16 6 34 34 H 1.09002 * 117.49523 * 359.97438 * 17 16 6 35 35 H 1.09007 * 117.49365 * 252.51288 * 18 17 16 36 36 H 1.08997 * 117.49940 * 107.48992 * 18 17 16 37 37 H 1.09004 * 109.46890 * 270.25346 * 21 20 19 38 38 H 1.08995 * 109.47317 * 30.25251 * 21 20 19 39 39 H 1.08998 * 109.47148 * 150.26046 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9095 1.8520 0.9758 5 6 3.3469 3.1773 0.9349 6 7 4.2265 3.6580 1.8913 7 6 4.5285 5.0902 1.9549 8 6 5.7144 5.3930 1.0759 9 1 6.1950 4.5981 0.5246 10 6 6.1862 6.6846 0.9753 11 7 5.6013 7.6523 1.6470 12 14 7.6566 7.0598 -0.1138 13 1 8.1293 5.8072 -0.7563 14 1 7.2604 8.0343 -1.1620 15 1 8.7489 7.6365 0.7105 16 6 4.8547 2.7341 2.8390 17 6 6.0289 3.2605 3.6666 18 6 4.6718 3.0199 4.3309 19 7 2.9013 3.9724 -0.0335 20 6 2.0684 3.5173 -0.9473 21 6 1.5910 4.4481 -2.0320 22 7 1.6372 2.2719 -0.9361 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.2488 1.1807 1.7508 29 1 3.6654 5.6591 1.6094 30 1 4.7585 5.3676 2.9836 31 1 5.9334 8.5610 1.5765 32 1 4.8869 1.6903 2.5268 33 1 6.8337 2.5630 3.8989 34 1 6.3346 4.2943 3.5058 35 1 4.0845 3.8957 4.6073 36 1 4.5837 2.1641 5.0002 37 1 0.6822 4.9526 -1.7038 38 1 2.3628 5.1890 -2.2406 39 1 1.3826 3.8760 -2.9360 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088759992.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:56 Heat of formation + Delta-G solvation = 54.129387 kcal Electronic energy + Delta-G solvation = -19682.450737 eV Core-core repulsion = 16818.154565 eV Total energy + Delta-G solvation = -2864.296172 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.86283 -39.34869 -36.22376 -35.44316 -34.83688 -32.30329 -32.01449 -29.81460 -28.63169 -25.79703 -24.63563 -24.00173 -23.18533 -22.21761 -20.80423 -18.73888 -18.39460 -18.25766 -16.67117 -16.31961 -16.22614 -15.84957 -15.50321 -15.11660 -14.85644 -14.61166 -14.17755 -13.85771 -13.58012 -13.35362 -13.19238 -13.17030 -12.87851 -12.67106 -12.46796 -12.33004 -12.25544 -12.16726 -11.94568 -11.49204 -11.45661 -11.26101 -11.17113 -10.62551 -10.31830 -9.89054 -8.66787 -8.12969 -6.31923 0.24033 0.56135 1.33967 1.36049 1.47357 2.02757 2.38512 2.87992 3.09499 3.15277 3.22490 3.44272 3.81196 3.88965 4.01410 4.14352 4.26682 4.33130 4.46405 4.57708 4.64127 4.68431 4.74817 4.80120 4.80418 4.91900 5.04784 5.06522 5.08793 5.14671 5.25033 5.25130 5.36512 5.44099 5.63327 5.71627 5.99672 6.10299 6.42892 6.72117 6.79084 7.35678 7.57057 8.86820 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018546 B = 0.006668 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.433327 B = 4197.843039 C = 5253.577725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.065 4.065 3 C 0.192 3.808 4 C -0.308 4.308 5 C 0.425 3.575 6 N -0.563 5.563 7 C 0.277 3.723 8 C -0.516 4.516 9 H 0.041 0.959 10 C 0.013 3.987 11 N -0.928 5.928 12 Si 0.959 3.041 13 H -0.274 1.274 14 H -0.280 1.280 15 H -0.272 1.272 16 C 0.070 3.930 17 C -0.181 4.181 18 C -0.178 4.178 19 N -0.602 5.602 20 C 0.336 3.664 21 C -0.076 4.076 22 N -0.576 5.576 23 H 0.042 0.958 24 H 0.051 0.949 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.162 0.838 29 H 0.004 0.996 30 H 0.017 0.983 31 H 0.265 0.735 32 H 0.147 0.853 33 H 0.127 0.873 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.136 0.864 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.076 -15.209 0.190 16.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.102 4.102 3 C 0.049 3.951 4 C -0.336 4.336 5 C 0.182 3.818 6 N -0.270 5.270 7 C 0.156 3.844 8 C -0.555 4.555 9 H 0.059 0.941 10 C -0.185 4.185 11 N -0.568 5.568 12 Si 0.785 3.215 13 H -0.199 1.199 14 H -0.206 1.206 15 H -0.197 1.197 16 C -0.035 4.035 17 C -0.219 4.219 18 C -0.216 4.216 19 N -0.328 5.328 20 C 0.067 3.933 21 C -0.134 4.134 22 N -0.298 5.298 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.102 0.898 26 H 0.112 0.888 27 H 0.120 0.880 28 H 0.179 0.821 29 H 0.022 0.978 30 H 0.035 0.965 31 H 0.074 0.926 32 H 0.165 0.835 33 H 0.145 0.855 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.154 0.846 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.229 -14.331 -0.301 15.629 hybrid contribution 1.213 0.676 0.199 1.403 sum -5.016 -13.655 -0.102 14.547 Atomic orbital electron populations 1.21603 0.93405 1.02768 1.01592 1.20589 0.97409 0.87581 1.04670 1.21953 0.88741 0.97141 0.87266 1.22153 1.08485 0.96006 1.06933 1.18920 0.86738 0.89608 0.86519 1.46452 1.42504 1.08235 1.29839 1.18666 0.94748 0.75453 0.95484 1.21492 1.13727 0.93325 1.27000 0.94080 1.25682 0.99906 0.95850 0.97109 1.70046 1.42443 1.01078 1.43251 0.85492 0.79315 0.77954 0.78769 1.19877 1.20563 1.19737 1.21823 1.00918 0.93949 0.86785 1.23344 0.92645 1.02977 1.02941 1.23446 0.99155 1.04004 0.95041 1.67952 1.18217 1.40267 1.06335 1.23474 0.87267 0.90190 0.92415 1.20534 1.01751 0.96689 0.94411 1.68069 1.29892 1.03832 1.28013 0.93849 0.92984 0.89760 0.88812 0.87968 0.82097 0.97828 0.96467 0.92576 0.83536 0.85508 0.90562 0.90976 0.84577 0.88966 0.91031 0.88010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.78 71.98 0.70 -1.88 16 2 C -0.06 -1.33 6.36 29.85 0.19 -1.14 16 3 C 0.19 6.00 6.20 42.42 0.26 6.27 16 4 C -0.31 -10.45 8.95 22.57 0.20 -10.25 16 5 C 0.42 18.49 7.36 133.16 0.98 19.47 16 6 N -0.56 -25.04 2.91 -683.66 -1.99 -27.03 16 7 C 0.28 14.98 4.40 85.63 0.38 15.35 16 8 C -0.52 -29.70 8.96 25.60 0.23 -29.47 16 9 H 0.04 2.43 7.81 -2.91 -0.02 2.41 16 10 C 0.01 0.76 5.46 84.65 0.46 1.22 16 11 N -0.93 -55.74 13.29 21.45 0.28 -55.46 16 12 Si 0.96 45.43 29.54 68.60 2.03 47.46 16 13 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 14 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 15 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 16 C 0.07 2.36 5.94 44.99 0.27 2.63 16 17 C -0.18 -5.97 9.72 30.60 0.30 -5.67 16 18 C -0.18 -5.16 10.03 30.60 0.31 -4.85 16 19 N -0.60 -28.30 9.27 -185.44 -1.72 -30.02 16 20 C 0.34 13.32 7.64 138.76 1.06 14.38 16 21 C -0.08 -2.38 10.32 71.23 0.73 -1.65 16 22 N -0.58 -20.44 9.93 -176.29 -1.75 -22.19 16 23 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 24 H 0.05 1.14 7.98 -2.39 -0.02 1.12 16 25 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 26 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 27 H 0.10 1.60 7.93 -2.39 -0.02 1.58 16 28 H 0.16 4.30 6.35 -2.91 -0.02 4.28 16 29 H 0.00 0.22 7.55 -2.39 -0.02 0.21 16 30 H 0.02 0.97 6.26 -2.39 -0.01 0.96 16 31 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 32 H 0.15 3.98 6.60 -2.39 -0.02 3.96 16 33 H 0.13 3.25 8.14 -2.39 -0.02 3.23 16 34 H 0.08 3.22 6.29 -2.39 -0.02 3.21 16 35 H 0.07 2.44 7.88 -2.38 -0.02 2.42 16 36 H 0.14 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.09 2.60 8.14 -2.39 -0.02 2.59 16 38 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -71.20 325.47 3.96 -67.23 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 1.03 Total: 15.61 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 6.07 Total: 4.40 kcal Atomic # 7 Polarization: -129.54 SS G_CDS: -5.17 Total: -134.71 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -71.20 3.96 -67.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088759992.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.362 kcal (2) G-P(sol) polarization free energy of solvation -71.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds