Wall clock time and date at job start Mon Mar 30 2020 07:00:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.50694 * 109.47032 * 2 1
4 4 C 1.38115 * 120.40162 * 125.00160 * 3 2 1
5 5 C 1.39623 * 118.33764 * 180.02562 * 4 3 2
6 6 N 1.38548 * 120.53408 * 179.97438 * 5 4 3
7 7 C 1.46502 * 119.99866 * 188.78254 * 6 5 4
8 8 C 1.50695 * 109.47079 * 269.99903 * 7 6 5
9 9 H 1.08009 * 120.00068 * 0.02562 * 8 7 6
10 10 C 1.37876 * 120.00391 * 180.02562 * 8 7 6
11 11 N 1.31520 * 119.99419 * 0.02562 * 10 8 7
12 12 Si 1.86791 * 120.00479 * 179.97438 * 10 8 7
13 13 H 1.48504 * 109.47114 * 0.02562 * 12 10 8
14 14 H 1.48504 * 109.47033 * 120.00362 * 12 10 8
15 15 H 1.48495 * 109.47649 * 239.99953 * 12 10 8
16 16 C 1.46497 * 119.99722 * 8.78679 * 6 5 4
17 17 C 1.53001 * 117.51855 * 167.22153 * 16 6 5
18 18 C 1.53004 * 60.00094 * 107.48091 * 17 16 6
19 19 N 1.32992 * 118.93620 * 0.25724 * 5 4 3
20 20 C 1.31752 * 120.68647 * 359.48288 * 19 5 4
21 21 C 1.50693 * 119.08413 * 180.26649 * 20 19 5
22 22 N 1.31796 * 121.82912 * 0.53053 * 20 19 5
23 23 H 1.09004 * 109.46998 * 299.99272 * 1 2 3
24 24 H 1.08995 * 109.47299 * 59.99788 * 1 2 3
25 25 H 1.09007 * 109.46963 * 179.97438 * 1 2 3
26 26 H 1.09004 * 109.46998 * 240.00728 * 2 1 3
27 27 H 1.09001 * 109.47624 * 120.00519 * 2 1 3
28 28 H 1.08002 * 120.83097 * 0.04936 * 4 3 2
29 29 H 1.08998 * 109.47274 * 30.00275 * 7 6 5
30 30 H 1.09002 * 109.46814 * 150.00305 * 7 6 5
31 31 H 0.97001 * 119.99878 * 179.97438 * 11 10 8
32 32 H 1.08997 * 115.55354 * 21.51833 * 16 6 5
33 33 H 1.08999 * 117.50185 * 214.97044 * 17 16 6
34 34 H 1.09002 * 117.49523 * 359.97438 * 17 16 6
35 35 H 1.09007 * 117.49365 * 252.51288 * 18 17 16
36 36 H 1.08997 * 117.49940 * 107.48992 * 18 17 16
37 37 H 1.09004 * 109.46890 * 270.25346 * 21 20 19
38 38 H 1.08995 * 109.47317 * 30.25251 * 21 20 19
39 39 H 1.08998 * 109.47148 * 150.26046 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 6 2.9095 1.8520 0.9758
5 6 3.3469 3.1773 0.9349
6 7 4.2265 3.6580 1.8913
7 6 4.5285 5.0902 1.9549
8 6 5.7144 5.3930 1.0759
9 1 6.1950 4.5981 0.5246
10 6 6.1862 6.6846 0.9753
11 7 5.6013 7.6523 1.6470
12 14 7.6566 7.0598 -0.1138
13 1 8.1293 5.8072 -0.7563
14 1 7.2604 8.0343 -1.1620
15 1 8.7489 7.6365 0.7105
16 6 4.8547 2.7341 2.8390
17 6 6.0289 3.2605 3.6666
18 6 4.6718 3.0199 4.3309
19 7 2.9013 3.9724 -0.0335
20 6 2.0684 3.5173 -0.9473
21 6 1.5910 4.4481 -2.0320
22 7 1.6372 2.2719 -0.9361
23 1 -0.3633 0.5137 0.8901
24 1 -0.3633 0.5138 -0.8899
25 1 -0.3633 -1.0277 -0.0005
26 1 1.8933 -0.5137 -0.8901
27 1 1.8934 -0.5139 0.8899
28 1 3.2488 1.1807 1.7508
29 1 3.6654 5.6591 1.6094
30 1 4.7585 5.3676 2.9836
31 1 5.9334 8.5610 1.5765
32 1 4.8869 1.6903 2.5268
33 1 6.8337 2.5630 3.8989
34 1 6.3346 4.2943 3.5058
35 1 4.0845 3.8957 4.6073
36 1 4.5837 2.1641 5.0002
37 1 0.6822 4.9526 -1.7038
38 1 2.3628 5.1890 -2.2406
39 1 1.3826 3.8760 -2.9360
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000088759992.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:00:56
Heat of formation + Delta-G solvation = 54.129387 kcal
Electronic energy + Delta-G solvation = -19682.450737 eV
Core-core repulsion = 16818.154565 eV
Total energy + Delta-G solvation = -2864.296172 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 261.154 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-41.86283 -39.34869 -36.22376 -35.44316 -34.83688 -32.30329 -32.01449 -29.81460
-28.63169 -25.79703 -24.63563 -24.00173 -23.18533 -22.21761 -20.80423 -18.73888
-18.39460 -18.25766 -16.67117 -16.31961 -16.22614 -15.84957 -15.50321 -15.11660
-14.85644 -14.61166 -14.17755 -13.85771 -13.58012 -13.35362 -13.19238 -13.17030
-12.87851 -12.67106 -12.46796 -12.33004 -12.25544 -12.16726 -11.94568 -11.49204
-11.45661 -11.26101 -11.17113 -10.62551 -10.31830 -9.89054 -8.66787 -8.12969
-6.31923 0.24033 0.56135 1.33967 1.36049 1.47357 2.02757 2.38512
2.87992 3.09499 3.15277 3.22490 3.44272 3.81196 3.88965 4.01410
4.14352 4.26682 4.33130 4.46405 4.57708 4.64127 4.68431 4.74817
4.80120 4.80418 4.91900 5.04784 5.06522 5.08793 5.14671 5.25033
5.25130 5.36512 5.44099 5.63327 5.71627 5.99672 6.10299 6.42892
6.72117 6.79084 7.35678 7.57057 8.86820
Molecular weight = 261.15amu
Principal moments of inertia in cm(-1)
A = 0.018546 B = 0.006668 C = 0.005328
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1509.433327 B = 4197.843039 C = 5253.577725
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.065 4.065
3 C 0.192 3.808
4 C -0.308 4.308
5 C 0.425 3.575
6 N -0.563 5.563
7 C 0.277 3.723
8 C -0.516 4.516
9 H 0.041 0.959
10 C 0.013 3.987
11 N -0.928 5.928
12 Si 0.959 3.041
13 H -0.274 1.274
14 H -0.280 1.280
15 H -0.272 1.272
16 C 0.070 3.930
17 C -0.181 4.181
18 C -0.178 4.178
19 N -0.602 5.602
20 C 0.336 3.664
21 C -0.076 4.076
22 N -0.576 5.576
23 H 0.042 0.958
24 H 0.051 0.949
25 H 0.084 0.916
26 H 0.094 0.906
27 H 0.102 0.898
28 H 0.162 0.838
29 H 0.004 0.996
30 H 0.017 0.983
31 H 0.265 0.735
32 H 0.147 0.853
33 H 0.127 0.873
34 H 0.076 0.924
35 H 0.072 0.928
36 H 0.136 0.864
37 H 0.092 0.908
38 H 0.071 0.929
39 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.076 -15.209 0.190 16.379
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.102 4.102
3 C 0.049 3.951
4 C -0.336 4.336
5 C 0.182 3.818
6 N -0.270 5.270
7 C 0.156 3.844
8 C -0.555 4.555
9 H 0.059 0.941
10 C -0.185 4.185
11 N -0.568 5.568
12 Si 0.785 3.215
13 H -0.199 1.199
14 H -0.206 1.206
15 H -0.197 1.197
16 C -0.035 4.035
17 C -0.219 4.219
18 C -0.216 4.216
19 N -0.328 5.328
20 C 0.067 3.933
21 C -0.134 4.134
22 N -0.298 5.298
23 H 0.062 0.938
24 H 0.070 0.930
25 H 0.102 0.898
26 H 0.112 0.888
27 H 0.120 0.880
28 H 0.179 0.821
29 H 0.022 0.978
30 H 0.035 0.965
31 H 0.074 0.926
32 H 0.165 0.835
33 H 0.145 0.855
34 H 0.094 0.906
35 H 0.090 0.910
36 H 0.154 0.846
37 H 0.110 0.890
38 H 0.090 0.910
39 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges -6.229 -14.331 -0.301 15.629
hybrid contribution 1.213 0.676 0.199 1.403
sum -5.016 -13.655 -0.102 14.547
Atomic orbital electron populations
1.21603 0.93405 1.02768 1.01592 1.20589 0.97409 0.87581 1.04670
1.21953 0.88741 0.97141 0.87266 1.22153 1.08485 0.96006 1.06933
1.18920 0.86738 0.89608 0.86519 1.46452 1.42504 1.08235 1.29839
1.18666 0.94748 0.75453 0.95484 1.21492 1.13727 0.93325 1.27000
0.94080 1.25682 0.99906 0.95850 0.97109 1.70046 1.42443 1.01078
1.43251 0.85492 0.79315 0.77954 0.78769 1.19877 1.20563 1.19737
1.21823 1.00918 0.93949 0.86785 1.23344 0.92645 1.02977 1.02941
1.23446 0.99155 1.04004 0.95041 1.67952 1.18217 1.40267 1.06335
1.23474 0.87267 0.90190 0.92415 1.20534 1.01751 0.96689 0.94411
1.68069 1.29892 1.03832 1.28013 0.93849 0.92984 0.89760 0.88812
0.87968 0.82097 0.97828 0.96467 0.92576 0.83536 0.85508 0.90562
0.90976 0.84577 0.88966 0.91031 0.88010
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.58 9.78 71.98 0.70 -1.88 16
2 C -0.06 -1.33 6.36 29.85 0.19 -1.14 16
3 C 0.19 6.00 6.20 42.42 0.26 6.27 16
4 C -0.31 -10.45 8.95 22.57 0.20 -10.25 16
5 C 0.42 18.49 7.36 133.16 0.98 19.47 16
6 N -0.56 -25.04 2.91 -683.66 -1.99 -27.03 16
7 C 0.28 14.98 4.40 85.63 0.38 15.35 16
8 C -0.52 -29.70 8.96 25.60 0.23 -29.47 16
9 H 0.04 2.43 7.81 -2.91 -0.02 2.41 16
10 C 0.01 0.76 5.46 84.65 0.46 1.22 16
11 N -0.93 -55.74 13.29 21.45 0.28 -55.46 16
12 Si 0.96 45.43 29.54 68.60 2.03 47.46 16
13 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16
14 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16
15 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16
16 C 0.07 2.36 5.94 44.99 0.27 2.63 16
17 C -0.18 -5.97 9.72 30.60 0.30 -5.67 16
18 C -0.18 -5.16 10.03 30.60 0.31 -4.85 16
19 N -0.60 -28.30 9.27 -185.44 -1.72 -30.02 16
20 C 0.34 13.32 7.64 138.76 1.06 14.38 16
21 C -0.08 -2.38 10.32 71.23 0.73 -1.65 16
22 N -0.58 -20.44 9.93 -176.29 -1.75 -22.19 16
23 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16
24 H 0.05 1.14 7.98 -2.39 -0.02 1.12 16
25 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16
26 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16
27 H 0.10 1.60 7.93 -2.39 -0.02 1.58 16
28 H 0.16 4.30 6.35 -2.91 -0.02 4.28 16
29 H 0.00 0.22 7.55 -2.39 -0.02 0.21 16
30 H 0.02 0.97 6.26 -2.39 -0.01 0.96 16
31 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16
32 H 0.15 3.98 6.60 -2.39 -0.02 3.96 16
33 H 0.13 3.25 8.14 -2.39 -0.02 3.23 16
34 H 0.08 3.22 6.29 -2.39 -0.02 3.21 16
35 H 0.07 2.44 7.88 -2.38 -0.02 2.42 16
36 H 0.14 2.78 8.14 -2.39 -0.02 2.76 16
37 H 0.09 2.60 8.14 -2.39 -0.02 2.59 16
38 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16
39 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16
Total: -1.00 -71.20 325.47 3.96 -67.23
By element:
Atomic # 1 Polarization: 14.58 SS G_CDS: 1.03 Total: 15.61 kcal
Atomic # 6 Polarization: -1.67 SS G_CDS: 6.07 Total: 4.40 kcal
Atomic # 7 Polarization: -129.54 SS G_CDS: -5.17 Total: -134.71 kcal
Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal
Total: -71.20 3.96 -67.23 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000088759992.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 121.362 kcal
(2) G-P(sol) polarization free energy of solvation -71.196 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.166 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.963 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.233 kcal
(6) G-S(sol) free energy of system = (1) + (5) 54.129 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds