Wall clock time and date at job start Mon Mar 30 2020 06:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46903 * 109.46956 * 2 1 4 4 C 1.46897 * 111.00240 * 297.29081 * 3 2 1 5 5 C 1.50695 * 109.47114 * 292.69437 * 4 3 2 6 6 H 1.08008 * 119.99947 * 355.02620 * 5 4 3 7 7 C 1.37879 * 120.00266 * 175.02653 * 5 4 3 8 8 N 1.31516 * 119.99595 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00219 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47205 * 60.00066 * 9 7 5 11 11 H 1.48499 * 109.47010 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47271 * 300.00008 * 9 7 5 13 13 C 1.46900 * 110.99600 * 61.24843 * 3 2 1 14 14 C 1.52990 * 109.47681 * 66.04386 * 13 3 2 15 15 H 1.09002 * 110.67081 * 308.21718 * 14 13 3 16 16 C 1.54711 * 110.75401 * 184.99727 * 14 13 3 17 17 C 1.51643 * 101.93729 * 216.24308 * 16 14 13 18 18 C 1.37735 * 132.17318 * 195.50238 * 17 16 14 19 19 C 1.38355 * 119.97853 * 179.41947 * 18 17 16 20 20 C 1.38285 * 119.76769 * 359.92189 * 19 18 17 21 21 C 1.37929 * 120.34779 * 0.21447 * 20 19 18 22 22 C 1.38888 * 107.04655 * 15.50331 * 17 16 14 23 23 O 1.36131 * 111.22927 * 0.83257 * 22 17 16 24 24 H 1.08994 * 109.47285 * 299.40709 * 1 2 3 25 25 H 1.09007 * 109.46761 * 59.40948 * 1 2 3 26 26 H 1.08999 * 109.46927 * 179.40438 * 1 2 3 27 27 H 1.08999 * 109.47087 * 240.00418 * 2 1 3 28 28 H 1.08996 * 109.46984 * 119.99850 * 2 1 3 29 29 H 1.09007 * 109.46729 * 52.69167 * 4 3 2 30 30 H 1.08997 * 109.47108 * 172.68940 * 4 3 2 31 31 H 0.96998 * 119.99617 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47020 * 306.03856 * 13 3 2 33 33 H 1.09001 * 109.46867 * 186.04881 * 13 3 2 34 34 H 1.08996 * 110.93564 * 98.08117 * 16 14 13 35 35 H 1.08995 * 110.93407 * 334.40362 * 16 14 13 36 36 H 1.07999 * 120.01754 * 359.43947 * 18 17 16 37 37 H 1.07999 * 120.11623 * 179.97438 * 19 18 17 38 38 H 1.08005 * 119.82709 * 180.22871 * 20 19 18 39 39 H 1.08005 * 119.88148 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6023 2.0910 -1.2187 5 6 2.3024 1.4917 -2.4111 6 1 3.0482 0.7234 -2.2695 7 6 1.9909 1.9241 -3.6827 8 7 1.0824 2.8593 -3.8550 9 14 2.8591 1.1817 -5.1606 10 1 2.5992 -0.2797 -5.2049 11 1 2.3486 1.8138 -6.4036 12 1 4.3204 1.4213 -5.0482 13 6 1.5732 2.1012 1.2024 14 6 2.2302 1.4828 2.4379 15 1 2.0790 0.4035 2.4546 16 6 1.6852 2.1327 3.7318 17 6 2.9193 2.1605 4.6126 18 6 3.0847 2.3492 5.9670 19 6 4.3523 2.3129 6.5203 20 6 5.4491 2.0854 5.7095 21 6 5.2860 1.8990 4.3526 22 6 4.0144 1.9448 3.7861 23 8 3.6314 1.8016 2.4877 24 1 -0.3633 0.5046 0.8952 25 1 -0.3633 0.5230 -0.8847 26 1 -0.3633 -1.0276 -0.0107 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 0.5239 1.9936 -1.3437 30 1 1.8646 3.1457 -1.1356 31 1 0.8635 3.1638 -4.7496 32 1 0.4895 2.0236 1.2900 33 1 1.8573 3.1508 1.1266 34 1 0.9029 1.5179 4.1768 35 1 1.3224 3.1419 3.5377 36 1 2.2253 2.5250 6.5969 37 1 4.4846 2.4609 7.5819 38 1 6.4387 2.0532 6.1409 39 1 6.1479 1.7215 3.7264 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090874862.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:50 Heat of formation + Delta-G solvation = -0.365640 kcal Electronic energy + Delta-G solvation = -19404.728522 eV Core-core repulsion = 16505.776517 eV Total energy + Delta-G solvation = -2898.952005 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.00682 -37.81697 -36.74078 -32.90022 -32.44749 -30.37409 -29.94737 -29.21646 -26.93770 -24.71784 -23.39023 -22.35198 -21.56427 -21.43809 -19.21410 -17.38147 -16.66778 -16.24819 -15.89182 -15.06883 -14.91534 -14.74768 -14.18966 -13.98306 -13.32237 -13.12796 -13.00525 -12.84930 -12.79542 -12.16082 -11.85575 -11.72428 -11.51641 -11.36000 -11.12891 -11.04918 -10.76980 -10.66667 -10.61866 -10.36094 -10.06342 -9.68265 -9.19163 -8.90951 -8.40547 -8.02847 -7.16922 -6.00270 -4.00869 1.28035 1.40530 3.35582 3.39338 3.42142 3.43101 3.73624 4.40001 4.47747 4.57487 4.84453 5.00662 5.04779 5.16862 5.29314 5.34984 5.39201 5.46394 5.61176 5.62448 5.75467 5.77956 5.88170 5.98621 6.05560 6.14670 6.29550 6.33134 6.39187 6.44925 6.46659 6.66826 6.70508 6.88127 7.30195 7.40521 7.42245 7.83236 8.11529 8.20267 8.56768 9.06913 9.63031 11.10458 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.032530 B = 0.004252 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.542059 B = 6583.545546 C = 6999.309923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.057 3.943 3 N -0.529 5.529 4 C 0.189 3.811 5 C -0.504 4.504 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.901 5.901 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.053 3.947 14 C 0.090 3.910 15 H 0.086 0.914 16 C -0.107 4.107 17 C -0.180 4.180 18 C -0.072 4.072 19 C -0.160 4.160 20 C -0.087 4.087 21 C -0.145 4.145 22 C 0.116 3.884 23 O -0.278 6.278 24 H 0.043 0.957 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.083 0.917 28 H 0.051 0.949 29 H 0.004 0.996 30 H 0.025 0.975 31 H 0.261 0.739 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.857 -2.456 18.903 19.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.072 4.072 3 N -0.252 5.252 4 C 0.064 3.936 5 C -0.542 4.542 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.075 4.075 14 C 0.034 3.966 15 H 0.103 0.897 16 C -0.145 4.145 17 C -0.181 4.181 18 C -0.090 4.090 19 C -0.179 4.179 20 C -0.105 4.105 21 C -0.164 4.164 22 C 0.069 3.931 23 O -0.191 6.191 24 H 0.062 0.938 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.102 0.898 28 H 0.069 0.931 29 H 0.021 0.979 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.401 -2.338 18.514 18.815 hybrid contribution -0.645 -0.262 -0.805 1.064 sum 1.756 -2.601 17.709 17.985 Atomic orbital electron populations 1.22412 0.99468 1.01115 1.01943 1.22040 0.91963 0.91684 1.01475 1.62320 1.59008 1.01700 1.02215 1.19791 0.94775 0.93772 0.85228 1.21113 1.21598 1.21454 0.90080 0.91930 1.24974 0.95329 0.95284 0.99008 1.69946 1.32291 1.29416 1.22390 0.86573 0.80020 0.79225 0.81669 1.20306 1.21423 1.20168 1.22194 0.96471 0.99044 0.89824 1.23541 0.78401 0.99733 0.94973 0.89650 1.21863 0.96103 1.02790 0.93727 1.20861 0.95394 1.07038 0.94764 1.20273 0.97459 0.98453 0.92799 1.20950 0.92281 1.04895 0.99745 1.20832 0.98952 0.98228 0.92456 1.20305 0.94785 1.06370 0.94931 1.19809 0.94337 0.94353 0.84575 1.87071 1.26849 1.84480 1.20711 0.93797 0.91149 0.93309 0.89826 0.93085 0.97865 0.95713 0.92938 0.93143 0.90353 0.89370 0.89077 0.86154 0.85880 0.85501 0.85463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.31 9.26 37.16 0.34 -2.96 16 2 C 0.06 1.09 5.69 -3.82 -0.02 1.07 16 3 N -0.53 -11.41 4.69 -236.08 -1.11 -12.52 16 4 C 0.19 4.89 4.54 -4.98 -0.02 4.86 16 5 C -0.50 -14.20 8.39 -34.44 -0.29 -14.49 16 6 H 0.06 1.76 7.39 -52.48 -0.39 1.38 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 9 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.05 0.95 4.41 -3.83 -0.02 0.93 16 14 C 0.09 1.40 3.59 -25.84 -0.09 1.30 16 15 H 0.09 1.29 6.28 -51.93 -0.33 0.96 16 16 C -0.11 -1.35 6.65 -26.52 -0.18 -1.52 16 17 C -0.18 -2.41 6.27 -104.10 -0.65 -3.06 16 18 C -0.07 -0.80 10.03 -39.72 -0.40 -1.20 16 19 C -0.16 -1.64 10.07 -39.52 -0.40 -2.04 16 20 C -0.09 -0.93 10.02 -39.68 -0.40 -1.33 16 21 C -0.15 -1.92 10.06 -39.31 -0.40 -2.31 16 22 C 0.12 1.78 7.04 -38.95 -0.27 1.51 16 23 O -0.28 -4.99 10.81 -20.16 -0.22 -5.21 16 24 H 0.04 0.68 6.33 -51.93 -0.33 0.35 16 25 H 0.07 1.43 6.28 -51.93 -0.33 1.10 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.08 1.77 6.98 -51.93 -0.36 1.40 16 28 H 0.05 0.86 6.29 -51.93 -0.33 0.54 16 29 H 0.00 0.10 6.02 -51.92 -0.31 -0.21 16 30 H 0.02 0.69 7.91 -51.93 -0.41 0.28 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.05 0.83 6.05 -51.93 -0.31 0.52 16 33 H 0.08 1.46 7.91 -51.93 -0.41 1.05 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 1.09 7.92 -51.93 -0.41 0.68 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 37 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 38 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 39 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 313.33 15.07 4.72 4.72 Total: -1.00 -30.91 313.33 -9.37 -40.28 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -5.59 Total: -0.30 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -2.89 Total: -17.77 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: -0.37 Total: -38.52 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: -0.22 Total: -5.21 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.91 -9.37 -40.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090874862.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.911 kcal (2) G-P(sol) polarization free energy of solvation -30.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds