Wall clock time and date at job start Mon Mar 30 2020 06:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46903 * 109.46956 * 2 1 4 4 C 1.46897 * 111.00240 * 297.29081 * 3 2 1 5 5 C 1.50695 * 109.47114 * 292.69437 * 4 3 2 6 6 H 1.08008 * 119.99947 * 355.02620 * 5 4 3 7 7 C 1.37879 * 120.00266 * 175.02653 * 5 4 3 8 8 N 1.31516 * 119.99595 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00219 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47205 * 60.00066 * 9 7 5 11 11 H 1.48499 * 109.47010 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47271 * 300.00008 * 9 7 5 13 13 C 1.46900 * 110.99600 * 61.24843 * 3 2 1 14 14 C 1.52990 * 109.47681 * 66.04386 * 13 3 2 15 15 H 1.09002 * 110.67081 * 308.21718 * 14 13 3 16 16 C 1.54711 * 110.75401 * 184.99727 * 14 13 3 17 17 C 1.51643 * 101.93729 * 216.24308 * 16 14 13 18 18 C 1.37735 * 132.17318 * 195.50238 * 17 16 14 19 19 C 1.38355 * 119.97853 * 179.41947 * 18 17 16 20 20 C 1.38285 * 119.76769 * 359.92189 * 19 18 17 21 21 C 1.37929 * 120.34779 * 0.21447 * 20 19 18 22 22 C 1.38888 * 107.04655 * 15.50331 * 17 16 14 23 23 O 1.36131 * 111.22927 * 0.83257 * 22 17 16 24 24 H 1.08994 * 109.47285 * 299.40709 * 1 2 3 25 25 H 1.09007 * 109.46761 * 59.40948 * 1 2 3 26 26 H 1.08999 * 109.46927 * 179.40438 * 1 2 3 27 27 H 1.08999 * 109.47087 * 240.00418 * 2 1 3 28 28 H 1.08996 * 109.46984 * 119.99850 * 2 1 3 29 29 H 1.09007 * 109.46729 * 52.69167 * 4 3 2 30 30 H 1.08997 * 109.47108 * 172.68940 * 4 3 2 31 31 H 0.96998 * 119.99617 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47020 * 306.03856 * 13 3 2 33 33 H 1.09001 * 109.46867 * 186.04881 * 13 3 2 34 34 H 1.08996 * 110.93564 * 98.08117 * 16 14 13 35 35 H 1.08995 * 110.93407 * 334.40362 * 16 14 13 36 36 H 1.07999 * 120.01754 * 359.43947 * 18 17 16 37 37 H 1.07999 * 120.11623 * 179.97438 * 19 18 17 38 38 H 1.08005 * 119.82709 * 180.22871 * 20 19 18 39 39 H 1.08005 * 119.88148 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6023 2.0910 -1.2187 5 6 2.3024 1.4917 -2.4111 6 1 3.0482 0.7234 -2.2695 7 6 1.9909 1.9241 -3.6827 8 7 1.0824 2.8593 -3.8550 9 14 2.8591 1.1817 -5.1606 10 1 2.5992 -0.2797 -5.2049 11 1 2.3486 1.8138 -6.4036 12 1 4.3204 1.4213 -5.0482 13 6 1.5732 2.1012 1.2024 14 6 2.2302 1.4828 2.4379 15 1 2.0790 0.4035 2.4546 16 6 1.6852 2.1327 3.7318 17 6 2.9193 2.1605 4.6126 18 6 3.0847 2.3492 5.9670 19 6 4.3523 2.3129 6.5203 20 6 5.4491 2.0854 5.7095 21 6 5.2860 1.8990 4.3526 22 6 4.0144 1.9448 3.7861 23 8 3.6314 1.8016 2.4877 24 1 -0.3633 0.5046 0.8952 25 1 -0.3633 0.5230 -0.8847 26 1 -0.3633 -1.0276 -0.0107 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 0.5239 1.9936 -1.3437 30 1 1.8646 3.1457 -1.1356 31 1 0.8635 3.1638 -4.7496 32 1 0.4895 2.0236 1.2900 33 1 1.8573 3.1508 1.1266 34 1 0.9029 1.5179 4.1768 35 1 1.3224 3.1419 3.5377 36 1 2.2253 2.5250 6.5969 37 1 4.4846 2.4609 7.5819 38 1 6.4387 2.0532 6.1409 39 1 6.1479 1.7215 3.7264 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090874862.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:49 Heat of formation + Delta-G solvation = -19.640937 kcal Electronic energy + Delta-G solvation = -19405.564362 eV Core-core repulsion = 16505.776517 eV Total energy + Delta-G solvation = -2899.787845 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.07839 -39.17043 -38.01564 -34.82241 -33.73367 -31.61858 -30.88878 -30.88121 -28.59238 -26.19659 -25.12981 -23.41730 -22.82762 -22.51562 -20.79145 -18.49992 -18.35180 -17.72258 -17.06997 -16.74679 -16.29820 -16.10848 -15.81192 -15.02307 -14.60864 -14.56365 -14.34414 -14.01992 -13.86881 -13.71434 -13.24906 -13.12999 -12.93261 -12.83324 -12.58666 -12.55784 -12.47352 -12.31771 -11.92821 -11.80755 -11.60615 -11.40593 -11.17356 -10.59685 -9.80069 -9.04942 -8.88735 -8.19375 -6.28688 0.38515 0.47308 1.39556 1.42852 1.50640 2.35620 2.40343 2.81397 3.12768 3.20085 3.47908 3.73646 3.89177 4.00574 4.20481 4.23460 4.25593 4.37161 4.41174 4.51602 4.59582 4.60574 4.69261 4.72069 4.83807 4.96337 4.96578 5.01133 5.17918 5.20435 5.36126 5.45051 5.49493 5.53441 5.58858 5.66850 5.82081 6.08068 6.34097 6.37580 6.65941 6.87278 7.40409 8.90899 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.032530 B = 0.004252 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.542059 B = 6583.545546 C = 6999.309923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.057 3.943 3 N -0.545 5.545 4 C 0.205 3.795 5 C -0.521 4.521 6 H 0.057 0.943 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.965 3.035 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.272 1.272 13 C 0.057 3.943 14 C 0.092 3.908 15 H 0.090 0.910 16 C -0.098 4.098 17 C -0.188 4.188 18 C -0.074 4.074 19 C -0.151 4.151 20 C -0.085 4.085 21 C -0.162 4.162 22 C 0.072 3.928 23 O -0.318 6.318 24 H 0.065 0.935 25 H 0.034 0.966 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.079 0.921 29 H -0.013 1.013 30 H -0.008 1.008 31 H 0.264 0.736 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.149 0.851 37 H 0.159 0.841 38 H 0.157 0.843 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.977 -3.396 21.355 21.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.070 4.070 3 N -0.269 5.269 4 C 0.079 3.921 5 C -0.560 4.560 6 H 0.075 0.925 7 C -0.194 4.194 8 N -0.574 5.574 9 Si 0.790 3.210 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.198 1.198 13 C -0.071 4.071 14 C 0.036 3.964 15 H 0.108 0.892 16 C -0.135 4.135 17 C -0.189 4.189 18 C -0.092 4.092 19 C -0.169 4.169 20 C -0.103 4.103 21 C -0.181 4.181 22 C 0.027 3.973 23 O -0.232 6.232 24 H 0.084 0.916 25 H 0.053 0.947 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.005 0.995 30 H 0.010 0.990 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.135 0.865 35 H 0.112 0.888 36 H 0.167 0.833 37 H 0.176 0.824 38 H 0.175 0.825 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.524 -3.288 20.995 21.400 hybrid contribution -0.624 0.053 -1.429 1.560 sum 1.901 -3.235 19.566 19.922 Atomic orbital electron populations 1.22286 0.97818 1.02556 1.01188 1.22045 0.93346 0.90109 1.01547 1.62173 1.59958 1.02832 1.01898 1.19406 0.93430 0.92246 0.86975 1.21405 1.21704 1.21468 0.91383 0.92520 1.25849 0.95961 0.95585 1.02024 1.70068 1.33572 1.30593 1.23196 0.85497 0.78758 0.78839 0.77895 1.19133 1.20668 1.19759 1.22206 0.97697 0.97871 0.89370 1.23470 0.78045 0.99896 0.95016 0.89200 1.21825 0.96540 1.03168 0.91988 1.21053 0.94767 1.07433 0.95654 1.20681 0.99083 0.97399 0.92044 1.21438 0.91547 1.02533 1.01398 1.21226 1.00863 0.96934 0.91295 1.20583 0.94186 1.07006 0.96334 1.20182 0.95951 0.97170 0.84016 1.86996 1.27877 1.85462 1.22887 0.91650 0.94725 0.90669 0.92362 0.90318 0.99538 0.99002 0.92723 0.91465 0.92229 0.86524 0.88828 0.83303 0.82383 0.82525 0.85777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.13 9.26 71.98 0.67 -5.46 16 2 C 0.06 2.21 5.69 86.30 0.49 2.71 16 3 N -0.55 -24.34 4.69 -900.81 -4.23 -28.56 16 4 C 0.21 11.18 4.54 85.56 0.39 11.56 16 5 C -0.52 -30.44 8.39 25.60 0.21 -30.23 16 6 H 0.06 3.30 7.39 -2.91 -0.02 3.28 16 7 C 0.00 0.22 5.46 84.65 0.46 0.68 16 8 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 9 Si 0.97 45.39 29.54 68.60 2.03 47.42 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 12 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 13 C 0.06 2.07 4.41 86.30 0.38 2.45 16 14 C 0.09 2.84 3.59 31.17 0.11 2.95 16 15 H 0.09 2.63 6.28 -2.39 -0.01 2.61 16 16 C -0.10 -2.30 6.65 30.73 0.20 -2.10 16 17 C -0.19 -4.74 6.27 -19.53 -0.12 -4.86 16 18 C -0.07 -1.41 10.03 22.18 0.22 -1.19 16 19 C -0.15 -2.51 10.07 22.31 0.22 -2.28 16 20 C -0.09 -1.61 10.02 22.21 0.22 -1.39 16 21 C -0.16 -4.23 10.06 22.45 0.23 -4.00 16 22 C 0.07 2.22 7.04 22.68 0.16 2.38 16 23 O -0.32 -11.77 10.81 -95.04 -1.03 -12.80 16 24 H 0.06 1.92 6.33 -2.39 -0.02 1.91 16 25 H 0.03 1.42 6.28 -2.38 -0.01 1.41 16 26 H 0.07 2.14 8.14 -2.39 -0.02 2.13 16 27 H 0.06 2.52 6.98 -2.39 -0.02 2.50 16 28 H 0.08 2.59 6.29 -2.39 -0.02 2.58 16 29 H -0.01 -0.74 6.02 -2.38 -0.01 -0.75 16 30 H -0.01 -0.48 7.91 -2.39 -0.02 -0.50 16 31 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 32 H 0.07 2.19 6.05 -2.39 -0.01 2.18 16 33 H 0.06 2.35 7.91 -2.39 -0.02 2.33 16 34 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.09 2.13 7.92 -2.39 -0.02 2.12 16 36 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 37 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 38 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 39 H 0.12 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -69.98 313.33 1.94 -68.04 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 1.03 Total: 11.37 kcal Atomic # 6 Polarization: -32.65 SS G_CDS: 3.85 Total: -28.80 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -3.94 Total: -85.23 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -1.03 Total: -12.80 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -69.98 1.94 -68.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090874862.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.395 kcal (2) G-P(sol) polarization free energy of solvation -69.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds