Wall clock time and date at job start Mon Mar 30 2020 06:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46899 * 109.47168 * 2 1 4 4 C 1.46903 * 111.00127 * 64.22235 * 3 2 1 5 5 C 1.50707 * 109.46855 * 66.04781 * 4 3 2 6 6 H 1.08005 * 119.99576 * 0.02562 * 5 4 3 7 7 C 1.37870 * 119.99883 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00368 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99755 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47317 * 89.99887 * 9 7 5 11 11 H 1.48500 * 109.46943 * 209.99760 * 9 7 5 12 12 H 1.48500 * 109.47069 * 329.99657 * 9 7 5 13 13 C 1.46899 * 110.99965 * 300.27503 * 3 2 1 14 14 C 1.53000 * 109.46898 * 288.87740 * 13 3 2 15 15 H 1.09004 * 110.80718 * 62.16549 * 14 13 3 16 16 C 1.54715 * 110.75033 * 185.47418 * 14 13 3 17 17 C 1.51648 * 101.92753 * 143.60206 * 16 14 13 18 18 C 1.37733 * 132.17014 * 164.08948 * 17 16 14 19 19 C 1.38357 * 119.97865 * 181.01021 * 18 17 16 20 20 C 1.38288 * 119.76409 * 359.97438 * 19 18 17 21 21 C 1.37938 * 120.35201 * 359.82134 * 20 19 18 22 22 C 1.38887 * 107.03744 * 344.64973 * 17 16 14 23 23 O 1.36132 * 111.23758 * 358.88358 * 22 17 16 24 24 H 1.09001 * 109.47006 * 185.95348 * 1 2 3 25 25 H 1.08996 * 109.46865 * 305.95370 * 1 2 3 26 26 H 1.08993 * 109.46911 * 65.95782 * 1 2 3 27 27 H 1.09001 * 109.47178 * 240.00141 * 2 1 3 28 28 H 1.09002 * 109.47010 * 120.00097 * 2 1 3 29 29 H 1.09000 * 109.47462 * 186.04846 * 4 3 2 30 30 H 1.08994 * 109.47288 * 306.04961 * 4 3 2 31 31 H 0.96995 * 120.00240 * 179.97438 * 8 7 5 32 32 H 1.08995 * 109.47751 * 168.88049 * 13 3 2 33 33 H 1.09005 * 109.47506 * 48.87396 * 13 3 2 34 34 H 1.08997 * 110.94083 * 261.76173 * 16 14 13 35 35 H 1.09000 * 110.93407 * 25.44703 * 16 14 13 36 36 H 1.08002 * 120.01783 * 0.97718 * 18 17 16 37 37 H 1.07994 * 120.11574 * 179.97438 * 19 18 17 38 38 H 1.07995 * 119.82466 * 179.79921 * 20 19 18 39 39 H 1.07997 * 119.88079 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6329 2.0802 1.2350 5 6 2.3388 1.4503 2.4081 6 1 3.0082 0.6172 2.2517 7 6 2.1309 1.9383 3.6807 8 7 1.3171 2.9536 3.8709 9 14 3.0065 1.1580 5.1347 10 1 4.3072 1.8403 5.3537 11 1 2.1650 1.2946 6.3506 12 1 3.2433 -0.2812 4.8557 13 6 1.5433 2.1118 -1.1844 14 6 2.2646 1.5884 -2.4281 15 1 2.0421 0.5336 -2.5896 16 6 1.8869 2.4251 -3.6735 17 6 3.1959 2.4572 -4.4383 18 6 3.4970 2.7810 -5.7428 19 6 4.8037 2.7024 -6.1906 20 6 5.8033 2.2987 -5.3244 21 6 5.5046 1.9780 -4.0165 22 6 4.1921 2.0576 -3.5569 23 8 3.6827 1.7994 -2.3212 24 1 -0.3633 -1.0221 0.1066 25 1 -0.3633 0.6034 0.8319 26 1 -0.3633 0.4187 -0.9385 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.9135 3.1310 1.1636 30 1 0.5548 2.0006 1.3743 31 1 1.1706 3.2967 4.7663 32 1 1.7496 3.1754 -1.0654 33 1 0.4697 1.9602 -1.2963 34 1 1.1086 1.9299 -4.2541 35 1 1.5778 3.4306 -3.3881 36 1 2.7134 3.0956 -6.4160 37 1 5.0422 2.9553 -7.2131 38 1 6.8231 2.2339 -5.6738 39 1 6.2910 1.6633 -3.3466 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090874863.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:52 Heat of formation + Delta-G solvation = -0.297839 kcal Electronic energy + Delta-G solvation = -19433.947914 eV Core-core repulsion = 16534.998850 eV Total energy + Delta-G solvation = -2898.949065 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.97322 -37.78372 -36.71427 -32.87871 -32.44779 -30.38319 -29.91916 -29.18665 -26.92641 -24.72297 -23.34989 -22.32326 -21.53772 -21.42702 -19.22444 -17.35234 -16.63496 -16.24320 -15.85123 -15.00881 -14.94830 -14.75660 -14.13108 -13.98208 -13.31543 -13.10997 -12.98320 -12.84884 -12.81591 -12.13654 -11.84461 -11.69579 -11.50222 -11.35794 -11.11760 -11.00844 -10.75945 -10.63833 -10.58727 -10.40677 -10.04432 -9.70319 -9.16182 -8.88407 -8.40274 -7.99867 -7.15560 -5.99939 -4.00241 1.30578 1.43369 3.34668 3.40413 3.43887 3.45888 3.76246 4.41487 4.49557 4.59418 4.86840 5.03083 5.06765 5.15091 5.31086 5.35718 5.42092 5.48009 5.63096 5.63340 5.75964 5.80901 5.88519 5.99898 6.08182 6.13682 6.29121 6.34819 6.39637 6.47381 6.49382 6.65349 6.72648 6.87750 7.31813 7.41501 7.44010 7.83122 8.12041 8.22661 8.57460 9.07138 9.63541 11.11037 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.029157 B = 0.004421 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.095244 B = 6331.226171 C = 6797.220163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.057 3.943 3 N -0.526 5.526 4 C 0.190 3.810 5 C -0.503 4.503 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.900 5.900 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.052 3.948 14 C 0.091 3.909 15 H 0.082 0.918 16 C -0.107 4.107 17 C -0.180 4.180 18 C -0.072 4.072 19 C -0.161 4.161 20 C -0.087 4.087 21 C -0.145 4.145 22 C 0.116 3.884 23 O -0.272 6.272 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.083 0.917 29 H 0.028 0.972 30 H -0.001 1.001 31 H 0.260 0.740 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.970 -1.971 -18.585 18.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.071 4.071 3 N -0.250 5.250 4 C 0.065 3.935 5 C -0.541 4.541 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.076 4.076 14 C 0.035 3.965 15 H 0.100 0.900 16 C -0.144 4.144 17 C -0.181 4.181 18 C -0.090 4.090 19 C -0.179 4.179 20 C -0.105 4.105 21 C -0.164 4.164 22 C 0.069 3.931 23 O -0.185 6.185 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.102 0.898 29 H 0.046 0.954 30 H 0.016 0.984 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.511 -1.886 -18.200 18.469 hybrid contribution -0.616 -0.239 0.801 1.038 sum 1.895 -2.125 -17.399 17.630 Atomic orbital electron populations 1.22416 0.99549 1.01478 1.01502 1.22034 0.91851 0.91690 1.01545 1.62298 1.58619 1.01582 1.02460 1.19796 0.94609 0.94152 0.84951 1.21152 1.25979 1.16362 0.90648 0.91887 1.24967 0.95488 0.95190 0.98957 1.69952 1.36821 1.25216 1.22045 0.86516 0.79493 0.79693 0.81819 1.20652 1.21398 1.19874 1.22227 0.95957 0.99293 0.90166 1.23486 0.78774 0.99167 0.95088 0.90044 1.21868 0.95356 1.02033 0.95190 1.20861 0.95814 1.06063 0.95399 1.20267 0.96643 0.98454 0.93634 1.20943 0.92643 1.04444 0.99917 1.20831 0.99319 0.97840 0.92473 1.20306 0.93899 1.05954 0.96239 1.19835 0.94102 0.93839 0.85302 1.87119 1.22919 1.84942 1.23528 0.93226 0.91227 0.93868 0.93134 0.89814 0.95385 0.98368 0.93000 0.90523 0.93052 0.89431 0.89059 0.86191 0.85913 0.85530 0.85462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.29 9.22 37.16 0.34 -2.95 16 2 C 0.06 1.10 5.73 -3.82 -0.02 1.08 16 3 N -0.53 -11.37 4.59 -236.07 -1.08 -12.46 16 4 C 0.19 4.91 4.54 -4.97 -0.02 4.89 16 5 C -0.50 -14.20 8.45 -34.44 -0.29 -14.49 16 6 H 0.06 1.78 7.13 -52.48 -0.37 1.41 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 9 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 13 C 0.05 0.93 4.50 -3.82 -0.02 0.91 16 14 C 0.09 1.42 3.51 -25.83 -0.09 1.33 16 15 H 0.08 1.21 6.91 -51.93 -0.36 0.85 16 16 C -0.11 -1.35 6.65 -26.51 -0.18 -1.53 16 17 C -0.18 -2.45 6.27 -104.10 -0.65 -3.10 16 18 C -0.07 -0.82 10.03 -39.72 -0.40 -1.22 16 19 C -0.16 -1.68 10.07 -39.52 -0.40 -2.08 16 20 C -0.09 -0.95 10.02 -39.67 -0.40 -1.35 16 21 C -0.15 -1.96 10.06 -39.30 -0.40 -2.36 16 22 C 0.12 1.81 7.04 -38.95 -0.27 1.54 16 23 O -0.27 -4.97 10.73 -20.16 -0.22 -5.18 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 1.39 6.12 -51.93 -0.32 1.08 16 26 H 0.04 0.66 6.49 -51.93 -0.34 0.32 16 27 H 0.05 0.87 6.75 -51.93 -0.35 0.51 16 28 H 0.08 1.78 6.75 -51.93 -0.35 1.43 16 29 H 0.03 0.79 7.87 -51.93 -0.41 0.38 16 30 H 0.00 -0.04 6.04 -51.93 -0.31 -0.35 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.08 1.42 7.79 -51.93 -0.40 1.02 16 33 H 0.05 0.83 5.90 -51.93 -0.31 0.53 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.09 1.11 7.90 -51.93 -0.41 0.70 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 313.48 15.07 4.72 4.72 Total: -1.00 -31.08 313.48 -9.35 -40.43 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -5.60 Total: -0.45 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: -2.89 Total: -17.85 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: -0.35 Total: -38.54 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -0.22 Total: -5.18 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.08 -9.35 -40.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090874863.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.133 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds