Wall clock time and date at job start Mon Mar 30 2020 06:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46899 * 109.47168 * 2 1 4 4 C 1.46903 * 111.00127 * 64.22235 * 3 2 1 5 5 C 1.50707 * 109.46855 * 66.04781 * 4 3 2 6 6 H 1.08005 * 119.99576 * 0.02562 * 5 4 3 7 7 C 1.37870 * 119.99883 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00368 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99755 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47317 * 89.99887 * 9 7 5 11 11 H 1.48500 * 109.46943 * 209.99760 * 9 7 5 12 12 H 1.48500 * 109.47069 * 329.99657 * 9 7 5 13 13 C 1.46899 * 110.99965 * 300.27503 * 3 2 1 14 14 C 1.53000 * 109.46898 * 288.87740 * 13 3 2 15 15 H 1.09004 * 110.80718 * 62.16549 * 14 13 3 16 16 C 1.54715 * 110.75033 * 185.47418 * 14 13 3 17 17 C 1.51648 * 101.92753 * 143.60206 * 16 14 13 18 18 C 1.37733 * 132.17014 * 164.08948 * 17 16 14 19 19 C 1.38357 * 119.97865 * 181.01021 * 18 17 16 20 20 C 1.38288 * 119.76409 * 359.97438 * 19 18 17 21 21 C 1.37938 * 120.35201 * 359.82134 * 20 19 18 22 22 C 1.38887 * 107.03744 * 344.64973 * 17 16 14 23 23 O 1.36132 * 111.23758 * 358.88358 * 22 17 16 24 24 H 1.09001 * 109.47006 * 185.95348 * 1 2 3 25 25 H 1.08996 * 109.46865 * 305.95370 * 1 2 3 26 26 H 1.08993 * 109.46911 * 65.95782 * 1 2 3 27 27 H 1.09001 * 109.47178 * 240.00141 * 2 1 3 28 28 H 1.09002 * 109.47010 * 120.00097 * 2 1 3 29 29 H 1.09000 * 109.47462 * 186.04846 * 4 3 2 30 30 H 1.08994 * 109.47288 * 306.04961 * 4 3 2 31 31 H 0.96995 * 120.00240 * 179.97438 * 8 7 5 32 32 H 1.08995 * 109.47751 * 168.88049 * 13 3 2 33 33 H 1.09005 * 109.47506 * 48.87396 * 13 3 2 34 34 H 1.08997 * 110.94083 * 261.76173 * 16 14 13 35 35 H 1.09000 * 110.93407 * 25.44703 * 16 14 13 36 36 H 1.08002 * 120.01783 * 0.97718 * 18 17 16 37 37 H 1.07994 * 120.11574 * 179.97438 * 19 18 17 38 38 H 1.07995 * 119.82466 * 179.79921 * 20 19 18 39 39 H 1.07997 * 119.88079 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6329 2.0802 1.2350 5 6 2.3388 1.4503 2.4081 6 1 3.0082 0.6172 2.2517 7 6 2.1309 1.9383 3.6807 8 7 1.3171 2.9536 3.8709 9 14 3.0065 1.1580 5.1347 10 1 4.3072 1.8403 5.3537 11 1 2.1650 1.2946 6.3506 12 1 3.2433 -0.2812 4.8557 13 6 1.5433 2.1118 -1.1844 14 6 2.2646 1.5884 -2.4281 15 1 2.0421 0.5336 -2.5896 16 6 1.8869 2.4251 -3.6735 17 6 3.1959 2.4572 -4.4383 18 6 3.4970 2.7810 -5.7428 19 6 4.8037 2.7024 -6.1906 20 6 5.8033 2.2987 -5.3244 21 6 5.5046 1.9780 -4.0165 22 6 4.1921 2.0576 -3.5569 23 8 3.6827 1.7994 -2.3212 24 1 -0.3633 -1.0221 0.1066 25 1 -0.3633 0.6034 0.8319 26 1 -0.3633 0.4187 -0.9385 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.9135 3.1310 1.1636 30 1 0.5548 2.0006 1.3743 31 1 1.1706 3.2967 4.7663 32 1 1.7496 3.1754 -1.0654 33 1 0.4697 1.9602 -1.2963 34 1 1.1086 1.9299 -4.2541 35 1 1.5778 3.4306 -3.3881 36 1 2.7134 3.0956 -6.4160 37 1 5.0422 2.9553 -7.2131 38 1 6.8231 2.2339 -5.6738 39 1 6.2910 1.6633 -3.3466 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090874863.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:51 Heat of formation + Delta-G solvation = -19.656546 kcal Electronic energy + Delta-G solvation = -19434.787371 eV Core-core repulsion = 16534.998850 eV Total energy + Delta-G solvation = -2899.788521 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.05544 -39.14558 -38.00052 -34.81340 -33.73893 -31.62760 -30.87361 -30.86087 -28.58416 -26.20375 -25.10205 -23.40218 -22.81148 -22.50501 -20.80382 -18.46625 -18.36486 -17.69916 -17.03104 -16.72822 -16.32294 -16.11950 -15.78628 -15.03470 -14.63738 -14.50938 -14.34962 -14.01001 -13.88073 -13.71326 -13.21784 -13.14885 -12.89238 -12.82995 -12.58316 -12.52882 -12.50585 -12.28106 -11.92437 -11.77427 -11.60064 -11.42915 -11.16296 -10.60135 -9.79448 -9.03547 -8.86892 -8.19674 -6.28580 0.39198 0.48228 1.39332 1.41227 1.51939 2.36979 2.41161 2.82140 3.12612 3.22930 3.49540 3.74490 3.89009 4.01933 4.21471 4.23931 4.26260 4.38979 4.41376 4.53866 4.60021 4.61764 4.68499 4.72077 4.84481 4.96091 4.96524 5.01741 5.18360 5.20012 5.36389 5.45716 5.49823 5.54326 5.59286 5.66483 5.83266 6.07547 6.36093 6.39406 6.67541 6.87246 7.40388 8.91135 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.029157 B = 0.004421 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.095244 B = 6331.226171 C = 6797.220163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.058 3.942 3 N -0.543 5.543 4 C 0.207 3.793 5 C -0.520 4.520 6 H 0.057 0.943 7 C 0.003 3.997 8 N -0.934 5.934 9 Si 0.966 3.034 10 H -0.276 1.276 11 H -0.280 1.280 12 H -0.265 1.265 13 C 0.055 3.945 14 C 0.092 3.908 15 H 0.090 0.910 16 C -0.098 4.098 17 C -0.189 4.189 18 C -0.074 4.074 19 C -0.152 4.152 20 C -0.086 4.086 21 C -0.164 4.164 22 C 0.072 3.928 23 O -0.313 6.313 24 H 0.073 0.927 25 H 0.035 0.965 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.057 0.943 29 H -0.007 1.007 30 H -0.017 1.017 31 H 0.264 0.736 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.149 0.851 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.189 -2.718 -21.019 21.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.070 4.070 3 N -0.266 5.266 4 C 0.081 3.919 5 C -0.558 4.558 6 H 0.075 0.925 7 C -0.195 4.195 8 N -0.575 5.575 9 Si 0.790 3.210 10 H -0.202 1.202 11 H -0.205 1.205 12 H -0.189 1.189 13 C -0.073 4.073 14 C 0.036 3.964 15 H 0.107 0.893 16 C -0.135 4.135 17 C -0.190 4.190 18 C -0.092 4.092 19 C -0.170 4.170 20 C -0.103 4.103 21 C -0.182 4.182 22 C 0.027 3.973 23 O -0.228 6.228 24 H 0.092 0.908 25 H 0.054 0.946 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.012 0.988 30 H 0.000 1.000 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.136 0.864 35 H 0.110 0.890 36 H 0.167 0.833 37 H 0.176 0.824 38 H 0.174 0.826 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.732 -2.642 -20.664 21.010 hybrid contribution -0.625 0.019 1.428 1.559 sum 2.107 -2.624 -19.236 19.528 Atomic orbital electron populations 1.22292 0.97769 1.02502 1.01310 1.22031 0.93343 0.90123 1.01495 1.62156 1.59698 1.02727 1.02011 1.19401 0.93239 0.92504 0.86797 1.21447 1.26097 1.16368 0.91914 0.92451 1.25848 0.96139 0.95611 1.01881 1.70071 1.38081 1.26469 1.22871 0.85439 0.78277 0.79071 0.78175 1.20189 1.20516 1.18921 1.22258 0.97375 0.97983 0.89688 1.23449 0.78029 0.99992 0.94893 0.89256 1.21833 0.95938 1.01827 0.93890 1.21065 0.95409 1.06371 0.96137 1.20680 0.98046 0.97486 0.92990 1.21432 0.91977 1.02279 1.01309 1.21220 1.01178 0.96641 0.91290 1.20579 0.93307 1.06714 0.97628 1.20207 0.95551 0.96495 0.85072 1.87041 1.24094 1.85931 1.25715 0.90837 0.94612 0.91444 0.90529 0.92420 0.98845 0.99981 0.92742 0.92343 0.91198 0.86424 0.88974 0.83290 0.82396 0.82582 0.85892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.09 9.22 71.98 0.66 -5.43 16 2 C 0.06 2.25 5.73 86.30 0.49 2.74 16 3 N -0.54 -24.27 4.59 -900.78 -4.13 -28.40 16 4 C 0.21 11.27 4.54 85.56 0.39 11.66 16 5 C -0.52 -30.44 8.45 25.60 0.22 -30.22 16 6 H 0.06 3.35 7.13 -2.91 -0.02 3.33 16 7 C 0.00 0.17 5.46 84.65 0.46 0.64 16 8 N -0.93 -57.19 13.29 21.44 0.28 -56.91 16 9 Si 0.97 45.56 29.54 68.60 2.03 47.59 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 13 C 0.06 2.00 4.50 86.30 0.39 2.39 16 14 C 0.09 2.86 3.51 31.18 0.11 2.97 16 15 H 0.09 2.55 6.91 -2.38 -0.02 2.53 16 16 C -0.10 -2.31 6.65 30.74 0.20 -2.11 16 17 C -0.19 -4.84 6.27 -19.53 -0.12 -4.96 16 18 C -0.07 -1.44 10.03 22.18 0.22 -1.22 16 19 C -0.15 -2.60 10.07 22.31 0.22 -2.38 16 20 C -0.09 -1.67 10.02 22.21 0.22 -1.45 16 21 C -0.16 -4.39 10.06 22.45 0.23 -4.16 16 22 C 0.07 2.27 7.04 22.68 0.16 2.43 16 23 O -0.31 -11.81 10.73 -95.05 -1.02 -12.83 16 24 H 0.07 2.11 8.14 -2.39 -0.02 2.10 16 25 H 0.03 1.45 6.12 -2.39 -0.01 1.43 16 26 H 0.07 1.93 6.49 -2.39 -0.02 1.91 16 27 H 0.08 2.56 6.75 -2.39 -0.02 2.54 16 28 H 0.06 2.51 6.75 -2.39 -0.02 2.49 16 29 H -0.01 -0.40 7.87 -2.39 -0.02 -0.41 16 30 H -0.02 -0.98 6.04 -2.39 -0.01 -1.00 16 31 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 32 H 0.06 2.29 7.79 -2.39 -0.02 2.27 16 33 H 0.07 2.24 5.90 -2.38 -0.01 2.22 16 34 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.09 2.15 7.90 -2.39 -0.02 2.13 16 36 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 38 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 39 H 0.12 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -70.44 313.48 2.05 -68.38 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 1.03 Total: 11.26 kcal Atomic # 6 Polarization: -32.96 SS G_CDS: 3.86 Total: -29.10 kcal Atomic # 7 Polarization: -81.46 SS G_CDS: -3.85 Total: -85.31 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -1.02 Total: -12.83 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -70.44 2.05 -68.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090874863.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.726 kcal (2) G-P(sol) polarization free energy of solvation -70.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds