Wall clock time and date at job start Mon Mar 30 2020 06:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46755 * 2 1 4 4 C 1.50693 * 109.46828 * 119.99888 * 2 1 3 5 5 H 1.08007 * 120.00050 * 114.30728 * 4 2 1 6 6 C 1.37878 * 120.00192 * 294.29928 * 4 2 1 7 7 N 1.31517 * 119.99697 * 157.54396 * 6 4 2 8 8 Si 1.86795 * 120.00125 * 337.55099 * 6 4 2 9 9 H 1.48499 * 109.46957 * 269.99332 * 8 6 4 10 10 H 1.48496 * 109.47407 * 29.99363 * 8 6 4 11 11 H 1.48503 * 109.47140 * 149.99620 * 8 6 4 12 12 N 1.46895 * 109.47126 * 240.00058 * 2 1 3 13 13 C 1.46901 * 110.99892 * 183.95342 * 12 2 1 14 14 C 1.46906 * 110.99984 * 60.00078 * 12 2 1 15 15 C 1.53001 * 109.46768 * 189.99958 * 14 12 2 16 16 H 1.09000 * 110.66523 * 308.21326 * 15 14 12 17 17 C 1.54709 * 110.74665 * 184.99858 * 15 14 12 18 18 C 1.51648 * 101.92779 * 216.38973 * 17 15 14 19 19 C 1.37744 * 132.17920 * 195.39861 * 18 17 15 20 20 C 1.38350 * 119.97819 * 179.62624 * 19 18 17 21 21 C 1.38289 * 119.76452 * 0.02562 * 20 19 18 22 22 C 1.37925 * 120.35303 * 0.16828 * 21 20 19 23 23 C 1.38873 * 107.03702 * 15.37937 * 18 17 15 24 24 O 1.36137 * 111.24078 * 1.07930 * 23 18 17 25 25 H 1.09001 * 109.47164 * 171.61660 * 1 2 3 26 26 H 1.08994 * 109.47265 * 291.61633 * 1 2 3 27 27 H 1.09002 * 109.47128 * 51.62383 * 1 2 3 28 28 H 0.97003 * 120.00143 * 354.95415 * 7 6 4 29 29 H 1.08993 * 109.47208 * 59.99890 * 13 12 2 30 30 H 1.09002 * 109.47149 * 180.02562 * 13 12 2 31 31 H 1.09004 * 109.47027 * 299.99398 * 13 12 2 32 32 H 1.09000 * 109.46738 * 309.99408 * 14 12 2 33 33 H 1.09001 * 109.47303 * 69.99999 * 14 12 2 34 34 H 1.08998 * 110.94391 * 334.55076 * 17 15 14 35 35 H 1.09006 * 110.93816 * 98.23525 * 17 15 14 36 36 H 1.08001 * 120.01048 * 359.64653 * 19 18 17 37 37 H 1.07994 * 120.11727 * 179.97438 * 20 19 18 38 38 H 1.08007 * 119.82219 * 180.14346 * 21 20 19 39 39 H 1.08003 * 119.87887 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5752 -1.6390 1.1341 6 6 1.7988 -0.1748 2.4793 7 7 1.8216 -0.9496 3.5418 8 14 1.4499 1.6512 2.6622 9 1 2.7273 2.3817 2.8611 10 1 0.7789 2.1522 1.4358 11 1 0.5660 1.8712 3.8351 12 7 2.0197 -0.6925 -1.1994 13 6 3.4851 -0.7945 -1.1870 14 6 1.5486 -0.0263 -2.4211 15 6 1.8627 -0.9043 -3.6341 16 1 2.9131 -1.1953 -3.6367 17 6 1.4924 -0.1764 -4.9481 18 6 0.9779 -1.3175 -5.8042 19 6 0.7446 -1.4262 -7.1574 20 6 0.2702 -2.6144 -7.6838 21 6 0.0316 -3.6892 -6.8471 22 6 0.2608 -3.5813 -5.4913 23 6 0.7358 -2.3877 -4.9530 24 8 1.0097 -2.0613 -3.6600 25 1 -0.3633 -1.0167 -0.1498 26 1 -0.3633 0.3786 0.9553 27 1 -0.3633 0.6380 -0.8057 28 1 1.9297 -1.9082 3.4407 29 1 3.8030 -1.3530 -0.3067 30 1 3.8210 -1.3108 -2.0863 31 1 3.9187 0.2052 -1.1592 32 1 0.4722 0.1324 -2.3564 33 1 2.0519 0.9347 -2.5280 34 1 0.7115 0.5644 -4.7763 35 1 2.3714 0.2837 -5.3996 36 1 0.9322 -0.5842 -7.8072 37 1 0.0860 -2.7019 -8.7444 38 1 -0.3366 -4.6180 -7.2574 39 1 0.0723 -4.4258 -4.8449 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090874884.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:30 Heat of formation + Delta-G solvation = 4.194898 kcal Electronic energy + Delta-G solvation = -19553.065150 eV Core-core repulsion = 16654.310905 eV Total energy + Delta-G solvation = -2898.754245 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.06714 -37.81445 -36.75214 -33.15949 -32.47337 -30.49909 -30.00529 -29.36411 -26.61504 -24.28305 -23.91455 -22.37463 -21.64343 -21.03637 -19.25109 -17.52234 -17.36145 -16.72155 -15.96050 -15.24616 -15.00091 -14.24325 -14.04212 -13.66922 -13.52362 -13.22099 -13.11743 -12.98494 -12.58331 -12.17827 -11.93352 -11.77289 -11.70635 -11.47103 -11.14407 -10.91326 -10.80023 -10.67452 -10.33791 -10.25884 -10.08044 -9.75806 -8.95903 -8.85430 -8.22845 -8.08280 -7.32734 -6.44964 -4.01263 1.23090 1.35519 3.36013 3.40471 3.42750 3.58413 3.68156 4.37256 4.45299 4.51181 4.77438 4.92987 4.98342 5.08328 5.22806 5.24827 5.33887 5.38396 5.55355 5.56665 5.71101 5.83662 5.99782 6.03066 6.15249 6.24442 6.26854 6.39891 6.40998 6.45353 6.61100 6.63993 6.65598 6.85843 6.94313 7.31735 7.36466 7.76701 8.01386 8.34960 8.46139 9.01100 9.63699 10.93673 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.041186 B = 0.004325 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.683396 B = 6471.815360 C = 6643.700268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.190 3.810 3 H -0.008 1.008 4 C -0.596 4.596 5 H 0.065 0.935 6 C 0.036 3.964 7 N -0.901 5.901 8 Si 1.038 2.962 9 H -0.287 1.287 10 H -0.277 1.277 11 H -0.285 1.285 12 N -0.524 5.524 13 C 0.036 3.964 14 C 0.050 3.950 15 C 0.089 3.911 16 H 0.087 0.913 17 C -0.107 4.107 18 C -0.180 4.180 19 C -0.072 4.072 20 C -0.160 4.160 21 C -0.086 4.086 22 C -0.145 4.145 23 C 0.115 3.885 24 O -0.278 6.278 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.019 0.981 28 H 0.270 0.730 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.013 0.987 32 H 0.085 0.915 33 H 0.044 0.956 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.445 0.423 -21.158 21.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.083 3.917 3 H 0.009 0.991 4 C -0.633 4.633 5 H 0.083 0.917 6 C -0.170 4.170 7 N -0.534 5.534 8 Si 0.866 3.134 9 H -0.214 1.214 10 H -0.203 1.203 11 H -0.211 1.211 12 N -0.248 5.248 13 C -0.112 4.112 14 C -0.079 4.079 15 C 0.033 3.967 16 H 0.104 0.896 17 C -0.144 4.144 18 C -0.181 4.181 19 C -0.090 4.090 20 C -0.178 4.178 21 C -0.104 4.104 22 C -0.163 4.163 23 C 0.068 3.932 24 O -0.191 6.191 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.038 0.962 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.031 0.969 32 H 0.103 0.897 33 H 0.062 0.938 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.971 1.038 -19.765 19.890 hybrid contribution 0.671 -0.281 -1.213 1.415 sum -1.300 0.757 -20.978 21.032 Atomic orbital electron populations 1.22115 0.98251 1.00263 0.98697 1.19642 0.91810 0.91968 0.88277 0.99069 1.21916 1.40476 1.10634 0.90323 0.91699 1.25625 0.93724 1.05562 0.92119 1.70800 1.44290 1.06543 1.31759 0.84109 0.77147 0.76331 0.75831 1.21374 1.20308 1.21147 1.62006 1.09644 1.52007 1.01160 1.22273 0.88257 0.99190 1.01513 1.22280 1.02162 0.93591 0.89837 1.23540 0.94311 0.84117 0.94780 0.89577 1.21860 1.01988 0.96832 0.93763 1.20846 1.06851 0.95645 0.94719 1.20277 0.97950 0.97822 0.92918 1.20958 1.03584 0.93513 0.99731 1.20842 0.98469 0.98818 0.92297 1.20308 1.05274 0.95531 0.95212 1.19803 0.94996 0.93793 0.84573 1.87076 1.64162 1.46799 1.21064 0.92774 0.93258 0.96226 0.91984 0.90102 0.93760 0.96870 0.89667 0.93769 0.89107 0.89309 0.86122 0.85826 0.85448 0.85451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.17 37.16 0.30 -2.78 16 2 C 0.19 4.60 1.61 -68.87 -0.11 4.48 16 3 H -0.01 -0.20 6.50 -51.93 -0.34 -0.53 16 4 C -0.60 -16.70 8.00 -34.44 -0.28 -16.97 16 5 H 0.06 1.98 6.88 -52.48 -0.36 1.62 16 6 C 0.04 1.02 5.19 -17.82 -0.09 0.93 16 7 N -0.90 -27.57 13.70 55.43 0.76 -26.81 16 8 Si 1.04 25.09 26.40 -169.99 -4.49 20.61 16 9 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.28 -6.24 6.03 56.52 0.34 -5.90 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 N -0.52 -11.20 4.62 -236.29 -1.09 -12.29 16 13 C 0.04 0.71 9.06 60.07 0.54 1.25 16 14 C 0.05 0.87 4.45 -3.82 -0.02 0.85 16 15 C 0.09 1.36 3.59 -25.83 -0.09 1.26 16 16 H 0.09 1.28 6.24 -51.93 -0.32 0.96 16 17 C -0.11 -1.30 6.65 -26.52 -0.18 -1.48 16 18 C -0.18 -2.35 6.27 -104.10 -0.65 -3.00 16 19 C -0.07 -0.78 10.03 -39.72 -0.40 -1.18 16 20 C -0.16 -1.59 10.07 -39.52 -0.40 -1.99 16 21 C -0.09 -0.91 10.02 -39.68 -0.40 -1.30 16 22 C -0.14 -1.88 10.06 -39.31 -0.40 -2.28 16 23 C 0.11 1.73 7.04 -38.96 -0.27 1.46 16 24 O -0.28 -4.91 10.81 -20.18 -0.22 -5.13 16 25 H 0.05 1.27 8.14 -51.93 -0.42 0.84 16 26 H 0.05 1.15 5.86 -51.93 -0.30 0.84 16 27 H 0.02 0.38 6.66 -51.93 -0.35 0.03 16 28 H 0.27 8.28 8.73 -40.82 -0.36 7.92 16 29 H 0.08 1.77 6.34 -51.93 -0.33 1.44 16 30 H 0.04 0.74 6.18 -51.93 -0.32 0.42 16 31 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.09 1.51 6.01 -51.93 -0.31 1.20 16 33 H 0.04 0.70 8.12 -51.93 -0.42 0.28 16 34 H 0.09 1.04 7.92 -51.93 -0.41 0.63 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 39 H 0.13 1.54 8.06 -52.48 -0.42 1.11 16 LS Contribution 308.08 15.07 4.64 4.64 Total: -1.00 -31.28 308.08 -8.47 -39.75 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -5.64 Total: -0.03 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -2.43 Total: -20.74 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: -0.33 Total: -39.10 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.22 Total: -5.13 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -4.49 Total: 20.61 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.28 -8.47 -39.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090874884.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.946 kcal (2) G-P(sol) polarization free energy of solvation -31.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds