Wall clock time and date at job start Mon Mar 30 2020 06:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46755 * 2 1 4 4 C 1.50693 * 109.46828 * 119.99888 * 2 1 3 5 5 H 1.08007 * 120.00050 * 114.30728 * 4 2 1 6 6 C 1.37878 * 120.00192 * 294.29928 * 4 2 1 7 7 N 1.31517 * 119.99697 * 157.54396 * 6 4 2 8 8 Si 1.86795 * 120.00125 * 337.55099 * 6 4 2 9 9 H 1.48499 * 109.46957 * 269.99332 * 8 6 4 10 10 H 1.48496 * 109.47407 * 29.99363 * 8 6 4 11 11 H 1.48503 * 109.47140 * 149.99620 * 8 6 4 12 12 N 1.46895 * 109.47126 * 240.00058 * 2 1 3 13 13 C 1.46901 * 110.99892 * 183.95342 * 12 2 1 14 14 C 1.46906 * 110.99984 * 60.00078 * 12 2 1 15 15 C 1.53001 * 109.46768 * 189.99958 * 14 12 2 16 16 H 1.09000 * 110.66523 * 308.21326 * 15 14 12 17 17 C 1.54709 * 110.74665 * 184.99858 * 15 14 12 18 18 C 1.51648 * 101.92779 * 216.38973 * 17 15 14 19 19 C 1.37744 * 132.17920 * 195.39861 * 18 17 15 20 20 C 1.38350 * 119.97819 * 179.62624 * 19 18 17 21 21 C 1.38289 * 119.76452 * 0.02562 * 20 19 18 22 22 C 1.37925 * 120.35303 * 0.16828 * 21 20 19 23 23 C 1.38873 * 107.03702 * 15.37937 * 18 17 15 24 24 O 1.36137 * 111.24078 * 1.07930 * 23 18 17 25 25 H 1.09001 * 109.47164 * 171.61660 * 1 2 3 26 26 H 1.08994 * 109.47265 * 291.61633 * 1 2 3 27 27 H 1.09002 * 109.47128 * 51.62383 * 1 2 3 28 28 H 0.97003 * 120.00143 * 354.95415 * 7 6 4 29 29 H 1.08993 * 109.47208 * 59.99890 * 13 12 2 30 30 H 1.09002 * 109.47149 * 180.02562 * 13 12 2 31 31 H 1.09004 * 109.47027 * 299.99398 * 13 12 2 32 32 H 1.09000 * 109.46738 * 309.99408 * 14 12 2 33 33 H 1.09001 * 109.47303 * 69.99999 * 14 12 2 34 34 H 1.08998 * 110.94391 * 334.55076 * 17 15 14 35 35 H 1.09006 * 110.93816 * 98.23525 * 17 15 14 36 36 H 1.08001 * 120.01048 * 359.64653 * 19 18 17 37 37 H 1.07994 * 120.11727 * 179.97438 * 20 19 18 38 38 H 1.08007 * 119.82219 * 180.14346 * 21 20 19 39 39 H 1.08003 * 119.87887 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5752 -1.6390 1.1341 6 6 1.7988 -0.1748 2.4793 7 7 1.8216 -0.9496 3.5418 8 14 1.4499 1.6512 2.6622 9 1 2.7273 2.3817 2.8611 10 1 0.7789 2.1522 1.4358 11 1 0.5660 1.8712 3.8351 12 7 2.0197 -0.6925 -1.1994 13 6 3.4851 -0.7945 -1.1870 14 6 1.5486 -0.0263 -2.4211 15 6 1.8627 -0.9043 -3.6341 16 1 2.9131 -1.1953 -3.6367 17 6 1.4924 -0.1764 -4.9481 18 6 0.9779 -1.3175 -5.8042 19 6 0.7446 -1.4262 -7.1574 20 6 0.2702 -2.6144 -7.6838 21 6 0.0316 -3.6892 -6.8471 22 6 0.2608 -3.5813 -5.4913 23 6 0.7358 -2.3877 -4.9530 24 8 1.0097 -2.0613 -3.6600 25 1 -0.3633 -1.0167 -0.1498 26 1 -0.3633 0.3786 0.9553 27 1 -0.3633 0.6380 -0.8057 28 1 1.9297 -1.9082 3.4407 29 1 3.8030 -1.3530 -0.3067 30 1 3.8210 -1.3108 -2.0863 31 1 3.9187 0.2052 -1.1592 32 1 0.4722 0.1324 -2.3564 33 1 2.0519 0.9347 -2.5280 34 1 0.7115 0.5644 -4.7763 35 1 2.3714 0.2837 -5.3996 36 1 0.9322 -0.5842 -7.8072 37 1 0.0860 -2.7019 -8.7444 38 1 -0.3366 -4.6180 -7.2574 39 1 0.0723 -4.4258 -4.8449 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090874884.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:30 Heat of formation + Delta-G solvation = -16.510905 kcal Electronic energy + Delta-G solvation = -19553.963021 eV Core-core repulsion = 16654.310905 eV Total energy + Delta-G solvation = -2899.652116 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.09440 -39.13257 -38.05784 -35.00714 -33.72530 -32.14151 -30.91127 -30.74961 -28.03560 -26.21458 -25.35420 -23.33604 -22.58000 -22.36710 -21.03958 -19.57715 -18.47376 -17.75201 -17.05612 -16.68943 -16.31510 -15.65410 -15.46144 -15.15140 -14.83784 -14.52579 -14.25068 -14.09362 -14.01249 -13.77442 -13.29135 -13.24826 -13.10148 -12.72636 -12.60923 -12.43210 -12.27075 -12.17882 -12.02052 -11.63916 -11.59196 -11.47894 -10.96279 -10.41735 -9.82061 -9.07876 -8.96653 -8.74392 -6.30722 0.36613 0.45107 1.46510 1.51294 1.70317 2.34032 2.50255 2.79204 3.01955 3.12095 3.46046 3.69181 3.88494 3.98645 4.17676 4.22596 4.35459 4.39514 4.45809 4.51958 4.55902 4.63195 4.69275 4.75373 4.76665 4.84155 4.87732 4.92929 5.09476 5.15292 5.17499 5.42907 5.49223 5.51697 5.57008 5.78752 5.86474 6.07521 6.21622 6.32573 6.58631 6.74636 7.43912 8.62745 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.041186 B = 0.004325 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.683396 B = 6471.815360 C = 6643.700268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.191 3.809 3 H -0.001 1.001 4 C -0.596 4.596 5 H 0.022 0.978 6 C -0.016 4.016 7 N -0.934 5.934 8 Si 1.081 2.919 9 H -0.273 1.273 10 H -0.246 1.246 11 H -0.286 1.286 12 N -0.547 5.547 13 C 0.042 3.958 14 C 0.053 3.947 15 C 0.087 3.913 16 H 0.084 0.916 17 C -0.096 4.096 18 C -0.187 4.187 19 C -0.074 4.074 20 C -0.151 4.151 21 C -0.086 4.086 22 C -0.164 4.164 23 C 0.071 3.929 24 O -0.317 6.317 25 H 0.036 0.964 26 H 0.042 0.958 27 H 0.054 0.946 28 H 0.253 0.747 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.025 0.975 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.115 0.885 36 H 0.150 0.850 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.982 2.605 -24.786 25.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.083 3.917 3 H 0.016 0.984 4 C -0.633 4.633 5 H 0.040 0.960 6 C -0.215 4.215 7 N -0.569 5.569 8 Si 0.902 3.098 9 H -0.198 1.198 10 H -0.169 1.169 11 H -0.212 1.212 12 N -0.272 5.272 13 C -0.106 4.106 14 C -0.075 4.075 15 C 0.031 3.969 16 H 0.102 0.898 17 C -0.133 4.133 18 C -0.188 4.188 19 C -0.092 4.092 20 C -0.169 4.169 21 C -0.104 4.104 22 C -0.183 4.183 23 C 0.026 3.974 24 O -0.232 6.232 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.118 0.882 35 H 0.134 0.866 36 H 0.168 0.832 37 H 0.176 0.824 38 H 0.174 0.826 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.500 3.205 -23.437 23.787 hybrid contribution 0.852 -1.124 -0.221 1.427 sum -1.649 2.081 -23.658 23.807 Atomic orbital electron populations 1.22006 0.97148 1.00012 0.99652 1.19494 0.92550 0.91709 0.87927 0.98391 1.22079 1.39468 1.09162 0.92621 0.95961 1.27097 0.93080 1.09436 0.91846 1.70938 1.47394 1.05718 1.32871 0.83579 0.77959 0.71119 0.77132 1.19840 1.16931 1.21164 1.61863 1.10486 1.52967 1.01870 1.22179 0.87687 0.99600 1.01143 1.22332 1.01843 0.94757 0.88567 1.23520 0.93997 0.83946 0.95456 0.89787 1.21824 1.03298 0.96417 0.91787 1.21062 1.07059 0.95152 0.95528 1.20689 0.97033 0.99178 0.92268 1.21441 1.01466 0.92648 1.01337 1.21219 0.97590 1.00419 0.91159 1.20574 1.05930 0.95145 0.96606 1.20167 0.97547 0.95521 0.84143 1.87006 1.65134 1.47928 1.23139 0.94526 0.93950 0.92706 0.93865 0.93702 0.91090 0.95681 0.90182 0.91452 0.88248 0.86646 0.83196 0.82395 0.82645 0.86012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.82 8.17 71.98 0.59 -5.23 16 2 C 0.19 9.16 1.61 44.17 0.07 9.23 16 3 H 0.00 -0.06 6.50 -2.39 -0.02 -0.08 16 4 C -0.60 -34.48 8.00 25.60 0.20 -34.28 16 5 H 0.02 1.44 6.88 -2.91 -0.02 1.42 16 6 C -0.02 -0.93 5.19 84.65 0.44 -0.49 16 7 N -0.93 -59.39 13.70 21.45 0.29 -59.10 16 8 Si 1.08 50.00 26.40 68.60 1.81 51.81 16 9 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 10 H -0.25 -10.03 6.03 99.48 0.60 -9.43 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 12 N -0.55 -23.34 4.62 -901.47 -4.17 -27.51 16 13 C 0.04 1.66 9.06 127.69 1.16 2.82 16 14 C 0.05 1.74 4.45 86.30 0.38 2.12 16 15 C 0.09 2.55 3.59 31.18 0.11 2.66 16 16 H 0.08 2.42 6.24 -2.39 -0.01 2.40 16 17 C -0.10 -2.07 6.65 30.73 0.20 -1.87 16 18 C -0.19 -4.48 6.27 -19.53 -0.12 -4.60 16 19 C -0.07 -1.33 10.03 22.18 0.22 -1.11 16 20 C -0.15 -2.41 10.07 22.31 0.22 -2.19 16 21 C -0.09 -1.60 10.02 22.21 0.22 -1.37 16 22 C -0.16 -4.21 10.06 22.45 0.23 -3.98 16 23 C 0.07 2.14 7.04 22.67 0.16 2.30 16 24 O -0.32 -11.38 10.81 -95.11 -1.03 -12.41 16 25 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.04 1.91 5.86 -2.39 -0.01 1.90 16 27 H 0.05 2.04 6.66 -2.39 -0.02 2.02 16 28 H 0.25 16.44 8.73 -92.71 -0.81 15.63 16 29 H 0.04 2.06 6.34 -2.39 -0.02 2.04 16 30 H 0.07 2.37 6.18 -2.39 -0.01 2.36 16 31 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.08 2.69 6.01 -2.39 -0.01 2.68 16 33 H 0.07 1.91 8.12 -2.39 -0.02 1.89 16 34 H 0.10 1.97 7.92 -2.39 -0.02 1.95 16 35 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 37 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 38 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 39 H 0.12 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -71.49 308.08 1.89 -69.60 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.89 Total: 13.60 kcal Atomic # 6 Polarization: -40.09 SS G_CDS: 4.09 Total: -36.00 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -3.87 Total: -86.61 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -1.03 Total: -12.41 kcal Atomic # 14 Polarization: 50.00 SS G_CDS: 1.81 Total: 51.81 kcal Total: -71.49 1.89 -69.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090874884.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.088 kcal (2) G-P(sol) polarization free energy of solvation -71.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds