Wall clock time and date at job start Mon Mar 30 2020 06:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46658 * 2 1 4 4 C 1.50697 * 109.47293 * 240.00402 * 2 1 3 5 5 H 1.07996 * 119.99776 * 239.99444 * 4 2 1 6 6 C 1.37883 * 120.00157 * 59.99597 * 4 2 1 7 7 N 1.31513 * 119.99697 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99750 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46777 * 90.00450 * 8 6 4 10 10 H 1.48504 * 109.47124 * 209.99984 * 8 6 4 11 11 H 1.48494 * 109.47579 * 330.00169 * 8 6 4 12 12 N 1.46895 * 109.47364 * 119.99960 * 2 1 3 13 13 C 1.46904 * 111.00070 * 58.95370 * 12 2 1 14 14 C 1.46900 * 111.00051 * 295.00668 * 12 2 1 15 15 C 1.53006 * 109.47289 * 189.99822 * 14 12 2 16 16 H 1.09000 * 110.80904 * 303.13296 * 15 14 12 17 17 C 1.54702 * 110.74989 * 179.80906 * 15 14 12 18 18 C 1.51651 * 101.94301 * 216.45200 * 17 15 14 19 19 C 1.37739 * 132.17242 * 195.61144 * 18 17 15 20 20 C 1.38353 * 119.97753 * 179.08776 * 19 18 17 21 21 C 1.38287 * 119.76932 * 0.26344 * 20 19 18 22 22 C 1.37934 * 120.34714 * 359.66945 * 21 20 19 23 23 C 1.38886 * 107.04428 * 15.13604 * 18 17 15 24 24 O 1.36145 * 111.22047 * 1.44011 * 23 18 17 25 25 H 1.09001 * 109.46749 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47348 * 299.99366 * 1 2 3 27 27 H 1.09003 * 109.47180 * 60.00350 * 1 2 3 28 28 H 0.97000 * 119.99630 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.47255 * 296.05324 * 13 12 2 30 30 H 1.09002 * 109.46588 * 56.04640 * 13 12 2 31 31 H 1.08998 * 109.47112 * 176.04336 * 13 12 2 32 32 H 1.09005 * 109.47370 * 69.99495 * 14 12 2 33 33 H 1.09008 * 109.47164 * 309.99455 * 14 12 2 34 34 H 1.09002 * 110.93965 * 98.29065 * 17 15 14 35 35 H 1.09005 * 110.93766 * 334.60564 * 17 15 14 36 36 H 1.08001 * 120.00928 * 359.11682 * 19 18 17 37 37 H 1.08002 * 120.11265 * 179.97438 * 20 19 18 38 38 H 1.07999 * 119.82731 * 179.97438 * 21 20 19 39 39 H 1.08006 * 119.87837 * 180.25487 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6534 -1.5883 -1.1314 6 6 1.6993 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3226 -1.1193 -4.0079 9 1 1.3449 -2.1614 -4.4124 10 1 2.4874 -0.1400 -5.1120 11 1 3.6310 -1.7563 -3.7120 12 7 2.0197 -0.6925 1.1994 13 6 1.5284 -2.0761 1.2460 14 6 1.6487 0.0391 2.4180 15 6 2.3789 -0.5663 3.6186 16 1 2.1562 -1.6292 3.7116 17 6 2.0124 0.1865 4.9195 18 6 3.3278 0.1678 5.6741 19 6 3.6405 0.4100 6.9934 20 6 4.9508 0.3022 7.4243 21 6 5.9430 -0.0435 6.5252 22 6 5.6318 -0.2878 5.2038 23 6 4.3158 -0.1778 4.7612 24 8 3.7965 -0.3500 3.5146 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 0.7095 1.1619 -3.4844 29 1 0.4420 -2.0731 1.3346 30 1 1.8168 -2.5950 0.3318 31 1 1.9619 -2.5868 2.1058 32 1 0.5721 -0.0346 2.5725 33 1 1.9297 1.0870 2.3125 34 1 1.2385 -0.3457 5.4727 35 1 1.7018 1.2088 4.7037 36 1 2.8631 0.6834 7.6914 37 1 5.1986 0.4921 8.4582 38 1 6.9662 -0.1274 6.8605 39 1 6.4121 -0.5613 4.5090 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090874885.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:32 Heat of formation + Delta-G solvation = 3.858175 kcal Electronic energy + Delta-G solvation = -19490.335957 eV Core-core repulsion = 16591.567110 eV Total energy + Delta-G solvation = -2898.768847 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.98516 -37.75651 -36.73299 -33.10484 -32.41400 -30.21922 -29.93208 -28.32680 -26.41514 -25.14808 -24.03285 -22.32675 -21.56251 -21.14247 -19.17882 -17.33272 -16.62620 -16.23260 -15.85530 -15.16053 -14.89412 -14.28772 -14.11551 -13.71608 -13.32901 -13.17335 -13.05751 -12.78165 -12.53794 -12.17606 -11.71108 -11.67223 -11.41071 -11.11061 -11.08149 -10.78762 -10.72458 -10.69172 -10.46794 -10.39893 -10.01313 -9.74176 -8.89722 -8.86047 -8.37565 -8.01624 -7.13613 -5.99580 -4.02809 1.29228 1.41796 3.32319 3.38976 3.43568 3.44835 3.74552 4.39966 4.48453 4.58859 4.85884 5.02006 5.06152 5.20357 5.30958 5.32761 5.42225 5.47725 5.62498 5.67034 5.81542 5.95127 6.10073 6.16951 6.28346 6.33259 6.38759 6.45802 6.47737 6.65384 6.71077 6.80326 6.88666 7.10646 7.39134 7.49567 7.70917 7.84382 8.12979 8.38189 8.60016 9.02949 9.62021 11.07788 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.036723 B = 0.004228 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.284989 B = 6621.017789 C = 7015.144369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.210 3.790 3 H 0.040 0.960 4 C -0.498 4.498 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.528 5.528 13 C 0.031 3.969 14 C 0.058 3.942 15 C 0.089 3.911 16 H 0.084 0.916 17 C -0.107 4.107 18 C -0.180 4.180 19 C -0.072 4.072 20 C -0.161 4.161 21 C -0.087 4.087 22 C -0.145 4.145 23 C 0.115 3.885 24 O -0.275 6.275 25 H 0.030 0.970 26 H 0.006 0.994 27 H 0.089 0.911 28 H 0.260 0.740 29 H 0.016 0.984 30 H 0.077 0.923 31 H 0.041 0.959 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.307 -1.615 17.976 18.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.104 3.896 3 H 0.058 0.942 4 C -0.537 4.537 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.251 5.251 13 C -0.117 4.117 14 C -0.071 4.071 15 C 0.032 3.968 16 H 0.102 0.898 17 C -0.145 4.145 18 C -0.181 4.181 19 C -0.090 4.090 20 C -0.179 4.179 21 C -0.105 4.105 22 C -0.164 4.164 23 C 0.069 3.931 24 O -0.188 6.188 25 H 0.049 0.951 26 H 0.025 0.975 27 H 0.107 0.893 28 H 0.070 0.930 29 H 0.035 0.965 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.843 -1.514 17.547 18.027 hybrid contribution -0.798 -0.349 -0.730 1.137 sum 3.045 -1.863 16.817 17.192 Atomic orbital electron populations 1.22420 1.00890 0.99357 1.00528 1.19330 0.89640 0.94659 0.85944 0.94235 1.21118 1.30468 1.12474 0.89630 0.91878 1.24925 0.95259 0.95124 0.99002 1.69884 1.37207 1.23035 1.23375 0.86519 0.79278 0.79251 0.82501 1.20859 1.21302 1.19807 1.62322 1.59387 1.01766 1.01657 1.22301 0.96574 0.91372 1.01500 1.22158 0.96038 0.98970 0.89952 1.23558 0.78695 0.99664 0.94839 0.89832 1.21864 0.95279 1.02469 0.94846 1.20869 0.95850 1.06329 0.95003 1.20273 0.96584 0.98512 0.93634 1.20948 0.92647 1.04590 0.99701 1.20832 0.99349 0.98078 0.92225 1.20306 0.93765 1.06066 0.96246 1.19823 0.94071 0.94108 0.85128 1.87106 1.22871 1.86010 1.22849 0.95072 0.97466 0.89276 0.93037 0.96546 0.90477 0.94062 0.93420 0.90447 0.89392 0.89052 0.86165 0.85893 0.85514 0.85467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 8.27 37.16 0.31 -3.82 16 2 C 0.21 5.32 2.34 -68.87 -0.16 5.16 16 3 H 0.04 1.11 8.03 -51.93 -0.42 0.69 16 4 C -0.50 -13.74 7.88 -34.44 -0.27 -14.01 16 5 H 0.06 1.75 6.77 -52.49 -0.36 1.40 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -25.58 11.32 55.43 0.63 -24.96 16 8 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 12 N -0.53 -11.49 4.73 -236.28 -1.12 -12.61 16 13 C 0.03 0.61 8.57 60.07 0.51 1.12 16 14 C 0.06 1.04 4.07 -3.82 -0.02 1.02 16 15 C 0.09 1.40 3.49 -25.83 -0.09 1.31 16 16 H 0.08 1.26 6.51 -51.93 -0.34 0.93 16 17 C -0.11 -1.36 6.65 -26.52 -0.18 -1.54 16 18 C -0.18 -2.43 6.27 -104.10 -0.65 -3.08 16 19 C -0.07 -0.81 10.03 -39.72 -0.40 -1.21 16 20 C -0.16 -1.66 10.07 -39.52 -0.40 -2.06 16 21 C -0.09 -0.94 10.02 -39.67 -0.40 -1.34 16 22 C -0.15 -1.94 10.06 -39.31 -0.40 -2.33 16 23 C 0.12 1.79 7.03 -38.96 -0.27 1.51 16 24 O -0.28 -4.99 10.80 -20.20 -0.22 -5.21 16 25 H 0.03 0.72 6.48 -51.93 -0.34 0.38 16 26 H 0.01 0.14 6.75 -51.93 -0.35 -0.21 16 27 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 29 H 0.02 0.31 6.51 -51.93 -0.34 -0.03 16 30 H 0.08 1.64 6.41 -51.93 -0.33 1.30 16 31 H 0.04 0.71 6.43 -51.93 -0.33 0.37 16 32 H 0.05 0.81 6.94 -51.93 -0.36 0.45 16 33 H 0.08 1.45 8.00 -51.92 -0.42 1.04 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.12 7.92 -51.93 -0.41 0.70 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 38 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 LS Contribution 309.28 15.07 4.66 4.66 Total: -1.00 -29.92 309.28 -9.12 -39.04 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.55 Total: 0.35 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -2.50 Total: -17.76 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: -0.49 Total: -37.57 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: -0.22 Total: -5.21 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.92 -9.12 -39.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090874885.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.900 kcal (2) G-P(sol) polarization free energy of solvation -29.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds