Wall clock time and date at job start Mon Mar 30 2020 06:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46658 * 2 1 4 4 C 1.50697 * 109.47293 * 240.00402 * 2 1 3 5 5 H 1.07996 * 119.99776 * 239.99444 * 4 2 1 6 6 C 1.37883 * 120.00157 * 59.99597 * 4 2 1 7 7 N 1.31513 * 119.99697 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99750 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46777 * 90.00450 * 8 6 4 10 10 H 1.48504 * 109.47124 * 209.99984 * 8 6 4 11 11 H 1.48494 * 109.47579 * 330.00169 * 8 6 4 12 12 N 1.46895 * 109.47364 * 119.99960 * 2 1 3 13 13 C 1.46904 * 111.00070 * 58.95370 * 12 2 1 14 14 C 1.46900 * 111.00051 * 295.00668 * 12 2 1 15 15 C 1.53006 * 109.47289 * 189.99822 * 14 12 2 16 16 H 1.09000 * 110.80904 * 303.13296 * 15 14 12 17 17 C 1.54702 * 110.74989 * 179.80906 * 15 14 12 18 18 C 1.51651 * 101.94301 * 216.45200 * 17 15 14 19 19 C 1.37739 * 132.17242 * 195.61144 * 18 17 15 20 20 C 1.38353 * 119.97753 * 179.08776 * 19 18 17 21 21 C 1.38287 * 119.76932 * 0.26344 * 20 19 18 22 22 C 1.37934 * 120.34714 * 359.66945 * 21 20 19 23 23 C 1.38886 * 107.04428 * 15.13604 * 18 17 15 24 24 O 1.36145 * 111.22047 * 1.44011 * 23 18 17 25 25 H 1.09001 * 109.46749 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47348 * 299.99366 * 1 2 3 27 27 H 1.09003 * 109.47180 * 60.00350 * 1 2 3 28 28 H 0.97000 * 119.99630 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.47255 * 296.05324 * 13 12 2 30 30 H 1.09002 * 109.46588 * 56.04640 * 13 12 2 31 31 H 1.08998 * 109.47112 * 176.04336 * 13 12 2 32 32 H 1.09005 * 109.47370 * 69.99495 * 14 12 2 33 33 H 1.09008 * 109.47164 * 309.99455 * 14 12 2 34 34 H 1.09002 * 110.93965 * 98.29065 * 17 15 14 35 35 H 1.09005 * 110.93766 * 334.60564 * 17 15 14 36 36 H 1.08001 * 120.00928 * 359.11682 * 19 18 17 37 37 H 1.08002 * 120.11265 * 179.97438 * 20 19 18 38 38 H 1.07999 * 119.82731 * 179.97438 * 21 20 19 39 39 H 1.08006 * 119.87837 * 180.25487 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6534 -1.5883 -1.1314 6 6 1.6993 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3226 -1.1193 -4.0079 9 1 1.3449 -2.1614 -4.4124 10 1 2.4874 -0.1400 -5.1120 11 1 3.6310 -1.7563 -3.7120 12 7 2.0197 -0.6925 1.1994 13 6 1.5284 -2.0761 1.2460 14 6 1.6487 0.0391 2.4180 15 6 2.3789 -0.5663 3.6186 16 1 2.1562 -1.6292 3.7116 17 6 2.0124 0.1865 4.9195 18 6 3.3278 0.1678 5.6741 19 6 3.6405 0.4100 6.9934 20 6 4.9508 0.3022 7.4243 21 6 5.9430 -0.0435 6.5252 22 6 5.6318 -0.2878 5.2038 23 6 4.3158 -0.1778 4.7612 24 8 3.7965 -0.3500 3.5146 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 0.7095 1.1619 -3.4844 29 1 0.4420 -2.0731 1.3346 30 1 1.8168 -2.5950 0.3318 31 1 1.9619 -2.5868 2.1058 32 1 0.5721 -0.0346 2.5725 33 1 1.9297 1.0870 2.3125 34 1 1.2385 -0.3457 5.4727 35 1 1.7018 1.2088 4.7037 36 1 2.8631 0.6834 7.6914 37 1 5.1986 0.4921 8.4582 38 1 6.9662 -0.1274 6.8605 39 1 6.4121 -0.5613 4.5090 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090874885.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:32 Heat of formation + Delta-G solvation = -14.365259 kcal Electronic energy + Delta-G solvation = -19491.126184 eV Core-core repulsion = 16591.567110 eV Total energy + Delta-G solvation = -2899.559074 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.06142 -39.15317 -38.05935 -34.91834 -33.67873 -31.66059 -30.87765 -29.97768 -27.86840 -27.15109 -25.52992 -23.33852 -22.58747 -22.47623 -20.93713 -18.40846 -18.25827 -17.69124 -17.05607 -16.82846 -16.15645 -15.95735 -15.43696 -14.93845 -14.89484 -14.40541 -14.25734 -13.99010 -13.88787 -13.64695 -13.22864 -12.99072 -12.80771 -12.67923 -12.62029 -12.57320 -12.35262 -12.27446 -12.02082 -11.87125 -11.60642 -11.43990 -10.89395 -10.50311 -9.79804 -9.03961 -8.82846 -8.11672 -6.22198 0.38770 0.47654 1.41154 1.42564 1.53386 2.36826 2.42941 2.81537 3.17515 3.24609 3.49037 3.76127 3.91772 4.01410 4.21531 4.25799 4.38035 4.48180 4.53647 4.58120 4.65254 4.71319 4.74610 4.81786 4.86762 4.89684 4.97177 5.12535 5.17038 5.20246 5.45284 5.52320 5.54689 5.58986 5.69953 5.77827 5.82975 6.18820 6.35918 6.47350 6.73070 6.90953 7.46865 8.94703 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.036723 B = 0.004228 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.284989 B = 6621.017789 C = 7015.144369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.215 3.785 3 H 0.001 0.999 4 C -0.516 4.516 5 H 0.055 0.945 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.959 3.041 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.272 1.272 12 N -0.546 5.546 13 C 0.037 3.963 14 C 0.061 3.939 15 C 0.090 3.910 16 H 0.089 0.911 17 C -0.098 4.098 18 C -0.189 4.189 19 C -0.075 4.075 20 C -0.152 4.152 21 C -0.086 4.086 22 C -0.162 4.162 23 C 0.072 3.928 24 O -0.315 6.315 25 H 0.035 0.965 26 H 0.029 0.971 27 H 0.061 0.939 28 H 0.261 0.739 29 H 0.025 0.975 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.116 0.884 35 H 0.093 0.907 36 H 0.149 0.851 37 H 0.159 0.841 38 H 0.157 0.843 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.398 -2.196 20.410 20.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.108 3.892 3 H 0.019 0.981 4 C -0.554 4.554 5 H 0.073 0.927 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.197 1.197 12 N -0.269 5.269 13 C -0.111 4.111 14 C -0.067 4.067 15 C 0.034 3.966 16 H 0.106 0.894 17 C -0.135 4.135 18 C -0.189 4.189 19 C -0.092 4.092 20 C -0.169 4.169 21 C -0.103 4.103 22 C -0.181 4.181 23 C 0.026 3.974 24 O -0.229 6.229 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.134 0.866 35 H 0.112 0.888 36 H 0.167 0.833 37 H 0.176 0.824 38 H 0.175 0.825 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.937 -2.101 20.006 20.498 hybrid contribution -0.744 -0.138 -1.363 1.559 sum 3.193 -2.239 18.643 19.047 Atomic orbital electron populations 1.22192 0.99825 0.99411 1.00239 1.19065 0.90321 0.92714 0.87129 0.98089 1.21381 1.30593 1.12452 0.91020 0.92728 1.25683 0.95410 0.95805 1.01795 1.70010 1.37956 1.24090 1.24011 0.85539 0.78770 0.78288 0.78922 1.19877 1.20899 1.19715 1.62170 1.60141 1.02784 1.01853 1.22247 0.97152 0.90106 1.01554 1.22167 0.97296 0.97863 0.89370 1.23501 0.78057 1.00090 0.94987 0.89355 1.21824 0.95856 1.02505 0.93316 1.21064 0.95429 1.06694 0.95748 1.20681 0.97975 0.97549 0.93029 1.21436 0.91983 1.02320 1.01195 1.21226 1.01208 0.96840 0.91060 1.20583 0.93165 1.06724 0.97649 1.20195 0.95507 0.96850 0.84807 1.87030 1.23911 1.86981 1.25012 0.94644 0.95178 0.92023 0.92955 0.95699 0.92583 0.91495 0.91881 0.92095 0.86601 0.88831 0.83320 0.82387 0.82534 0.85795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.61 8.27 71.98 0.60 -7.01 16 2 C 0.21 11.21 2.34 44.17 0.10 11.31 16 3 H 0.00 0.07 8.03 -2.39 -0.02 0.05 16 4 C -0.52 -29.21 7.88 25.60 0.20 -29.01 16 5 H 0.05 3.11 6.77 -2.91 -0.02 3.09 16 6 C 0.01 0.64 5.30 84.66 0.45 1.09 16 7 N -0.92 -53.72 11.32 21.45 0.24 -53.48 16 8 Si 0.96 44.65 29.54 68.60 2.03 46.68 16 9 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 12 N -0.55 -24.23 4.73 -901.44 -4.26 -28.50 16 13 C 0.04 1.47 8.57 127.69 1.09 2.56 16 14 C 0.06 2.23 4.07 86.31 0.35 2.58 16 15 C 0.09 2.79 3.49 31.18 0.11 2.90 16 16 H 0.09 2.59 6.51 -2.39 -0.02 2.57 16 17 C -0.10 -2.33 6.65 30.73 0.20 -2.12 16 18 C -0.19 -4.80 6.27 -19.52 -0.12 -4.92 16 19 C -0.07 -1.44 10.03 22.18 0.22 -1.22 16 20 C -0.15 -2.55 10.07 22.31 0.22 -2.33 16 21 C -0.09 -1.64 10.02 22.21 0.22 -1.41 16 22 C -0.16 -4.28 10.06 22.45 0.23 -4.05 16 23 C 0.07 2.23 7.03 22.68 0.16 2.39 16 24 O -0.31 -11.73 10.80 -95.20 -1.03 -12.76 16 25 H 0.03 1.63 6.48 -2.39 -0.02 1.62 16 26 H 0.03 1.26 6.75 -2.39 -0.02 1.25 16 27 H 0.06 3.33 6.07 -2.39 -0.01 3.32 16 28 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 29 H 0.02 0.92 6.51 -2.39 -0.02 0.90 16 30 H 0.06 2.40 6.41 -2.39 -0.02 2.39 16 31 H 0.07 2.24 6.43 -2.39 -0.02 2.23 16 32 H 0.06 2.07 6.94 -2.38 -0.02 2.05 16 33 H 0.06 2.37 8.00 -2.38 -0.02 2.35 16 34 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.09 2.16 7.92 -2.38 -0.02 2.14 16 36 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 38 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 39 H 0.12 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -66.66 309.28 2.05 -64.61 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 1.04 Total: 12.70 kcal Atomic # 6 Polarization: -33.29 SS G_CDS: 4.04 Total: -29.25 kcal Atomic # 7 Polarization: -77.95 SS G_CDS: -4.02 Total: -81.97 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -1.03 Total: -12.76 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -66.66 2.05 -64.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090874885.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.241 kcal (2) G-P(sol) polarization free energy of solvation -66.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds