Wall clock time and date at job start Mon Mar 30 2020 06:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47287 * 2 1 4 4 C 1.36937 * 119.99799 * 95.56158 * 3 2 1 5 5 H 1.07999 * 119.99872 * 214.93213 * 4 3 2 6 6 C 1.38807 * 120.00291 * 34.92710 * 4 3 2 7 7 N 1.31616 * 120.00177 * 22.44801 * 6 4 3 8 8 Si 1.86800 * 120.00039 * 202.45165 * 6 4 3 9 9 H 1.48498 * 109.47176 * 265.10127 * 8 6 4 10 10 H 1.48497 * 109.47370 * 25.10280 * 8 6 4 11 11 H 1.48500 * 109.47370 * 145.09922 * 8 6 4 12 12 C 1.46500 * 120.00059 * 275.55775 * 3 2 1 13 13 C 1.53000 * 109.46904 * 269.99865 * 12 3 2 14 14 H 1.09001 * 110.66675 * 59.30433 * 13 12 3 15 15 C 1.54708 * 110.74773 * 182.51527 * 13 12 3 16 16 C 1.51644 * 101.92896 * 143.61057 * 15 13 12 17 17 C 1.37733 * 132.18271 * 164.60604 * 16 15 13 18 18 C 1.38351 * 119.98051 * 180.39833 * 17 16 15 19 19 C 1.50703 * 120.11409 * 179.97438 * 18 17 16 20 20 C 1.38284 * 119.76755 * 359.94187 * 18 17 16 21 21 C 1.37931 * 120.35127 * 359.87539 * 20 18 17 22 22 C 1.38885 * 107.03766 * 344.62109 * 16 15 13 23 23 O 1.36393 * 111.32166 * 359.07632 * 22 16 15 24 24 H 1.09002 * 109.47294 * 59.99636 * 1 2 3 25 25 H 1.08998 * 109.47715 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47346 * 299.99949 * 1 2 3 27 27 H 1.09004 * 109.47114 * 239.99608 * 2 1 3 28 28 H 1.09002 * 109.47294 * 120.00363 * 2 1 3 29 29 H 0.97001 * 120.00317 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.46790 * 30.00071 * 12 3 2 31 31 H 1.08998 * 109.46928 * 150.00066 * 12 3 2 32 32 H 1.09005 * 110.94073 * 261.77018 * 15 13 12 33 33 H 1.09004 * 110.93830 * 25.44815 * 15 13 12 34 34 H 1.08007 * 120.01282 * 0.34793 * 17 16 15 35 35 H 1.09003 * 109.46995 * 269.97732 * 19 18 17 36 36 H 1.08993 * 109.47255 * 29.97335 * 19 18 17 37 37 H 1.08995 * 109.47086 * 149.98233 * 19 18 17 38 38 H 1.08008 * 119.82357 * 179.85449 * 20 18 17 39 39 H 1.08000 * 119.88051 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3549 1.9884 1.1804 5 1 2.1714 3.0440 1.3161 6 6 2.9318 1.2471 2.2024 7 7 3.5546 0.1206 1.9277 8 14 2.8243 1.8484 3.9677 9 1 4.0517 2.6127 4.3059 10 1 1.6366 2.7266 4.1201 11 1 2.6990 0.6839 4.8806 12 6 2.1467 2.1128 -1.2628 13 6 3.5450 1.8888 -1.8420 14 1 3.7232 0.8279 -2.0178 15 6 3.7344 2.6997 -3.1458 16 6 5.1876 3.1213 -3.0444 17 6 6.0724 3.6219 -3.9737 18 6 7.3709 3.9203 -3.6013 19 6 8.3417 4.4676 -4.6157 20 6 7.7748 3.7152 -2.2947 21 6 6.8893 3.2175 -1.3615 22 6 5.5795 2.9173 -1.7277 23 8 4.5502 2.4370 -0.9726 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.9574 -0.3976 2.6419 30 1 1.3988 1.7524 -1.9690 31 1 1.9939 3.1770 -1.0832 32 1 3.5711 2.0723 -4.0221 33 1 3.0769 3.5690 -3.1630 34 1 5.7528 3.7807 -4.9932 35 1 8.8647 3.6428 -5.1000 36 1 7.7983 5.0430 -5.3651 37 1 9.0644 5.1125 -4.1160 38 1 8.7890 3.9456 -2.0035 39 1 7.2129 3.0599 -0.3432 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090898367.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:48 Heat of formation + Delta-G solvation = 8.189895 kcal Electronic energy + Delta-G solvation = -19740.588924 eV Core-core repulsion = 16842.007915 eV Total energy + Delta-G solvation = -2898.581009 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.52319 -37.47954 -35.69677 -32.42197 -31.75745 -31.31213 -30.20091 -28.45812 -26.46250 -25.28692 -23.39765 -21.83422 -21.35408 -20.63663 -19.75018 -16.99291 -16.54908 -16.08852 -15.20389 -14.79854 -14.35691 -13.90854 -13.84651 -13.55709 -13.42656 -13.17432 -12.76030 -12.52245 -12.28483 -12.10312 -11.93957 -11.54483 -11.41578 -11.30628 -11.08027 -10.83837 -10.72033 -10.56252 -10.32475 -10.03532 -9.91023 -9.79508 -9.56059 -8.57761 -8.38161 -7.48604 -6.55073 -5.70868 -3.22193 1.61492 1.72803 3.41985 3.49399 3.52424 3.89778 4.09707 4.56178 4.78900 4.99629 5.14475 5.19935 5.35997 5.43718 5.52028 5.58780 5.64200 5.68408 5.74095 5.87419 5.99356 6.04630 6.11720 6.24531 6.28003 6.32287 6.49544 6.55508 6.59250 6.65900 6.81400 6.82151 6.86472 6.87156 7.09631 7.26898 7.75783 7.89534 7.93371 8.58001 9.26488 9.88235 10.44329 11.32464 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.023834 B = 0.005810 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.513405 B = 4817.790693 C = 5685.683983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.140 3.860 3 N -0.578 5.578 4 C -0.247 4.247 5 H 0.060 0.940 6 C 0.013 3.987 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.288 1.288 10 H -0.278 1.278 11 H -0.290 1.290 12 C 0.149 3.851 13 C 0.066 3.934 14 H 0.073 0.927 15 C -0.107 4.107 16 C -0.182 4.182 17 C -0.072 4.072 18 C -0.139 4.139 19 C -0.101 4.101 20 C -0.086 4.086 21 C -0.146 4.146 22 C 0.119 3.881 23 O -0.253 6.253 24 H 0.032 0.968 25 H 0.034 0.966 26 H 0.049 0.951 27 H 0.018 0.982 28 H 0.097 0.903 29 H 0.252 0.748 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.116 0.884 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.123 0.877 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.080 4.826 -11.846 13.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.014 3.986 3 N -0.298 5.298 4 C -0.376 4.376 5 H 0.078 0.922 6 C -0.186 4.186 7 N -0.528 5.528 8 Si 0.722 3.278 9 H -0.215 1.215 10 H -0.204 1.204 11 H -0.216 1.216 12 C 0.021 3.979 13 C 0.007 3.993 14 H 0.091 0.909 15 C -0.145 4.145 16 C -0.183 4.183 17 C -0.090 4.090 18 C -0.139 4.139 19 C -0.158 4.158 20 C -0.104 4.104 21 C -0.164 4.164 22 C 0.072 3.928 23 O -0.165 6.165 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.036 0.964 28 H 0.115 0.885 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.134 0.866 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.141 0.859 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.089 4.681 -11.456 13.034 hybrid contribution 0.085 0.153 0.772 0.792 sum 4.175 4.833 -10.684 12.447 Atomic orbital electron populations 1.22326 1.00846 0.98743 1.00423 1.20913 0.89694 0.86380 1.01635 1.43891 1.73272 1.11605 1.00988 1.18950 1.34280 0.94349 0.90049 0.92220 1.25045 0.96558 0.98017 0.99013 1.70027 1.35165 1.16554 1.31067 0.86443 0.77968 0.77857 0.85492 1.21463 1.20379 1.21628 1.21169 0.89856 0.97434 0.89438 1.24449 0.92208 0.96556 0.86127 0.90912 1.21920 0.92406 1.00597 0.99610 1.20893 0.96411 1.05997 0.95001 1.20058 0.92200 0.98568 0.98172 1.19608 0.94877 1.04414 0.95009 1.20618 0.97694 1.00196 0.97299 1.20643 0.98743 0.98733 0.92303 1.20278 0.90156 1.05138 1.00860 1.20038 0.89954 0.92811 0.90005 1.87353 1.26210 1.72074 1.30874 0.94909 0.94666 0.93171 0.96396 0.88524 0.93842 0.92541 0.92876 0.90134 0.89690 0.86589 0.91900 0.92106 0.91994 0.85922 0.85632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 10.23 37.16 0.38 -2.87 16 2 C 0.14 3.27 5.95 -4.04 -0.02 3.25 16 3 N -0.58 -14.29 2.43 -173.24 -0.42 -14.71 16 4 C -0.25 -6.80 9.03 -15.06 -0.14 -6.93 16 5 H 0.06 1.67 7.92 -52.49 -0.42 1.26 16 6 C 0.01 0.38 4.90 -17.43 -0.09 0.29 16 7 N -0.89 -25.82 11.43 55.49 0.63 -25.19 16 8 Si 0.89 22.04 29.61 -169.99 -5.03 17.01 16 9 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 12 C 0.15 3.07 5.40 -4.04 -0.02 3.05 16 13 C 0.07 1.33 3.87 -25.83 -0.10 1.23 16 14 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 15 C -0.11 -1.71 6.65 -26.52 -0.18 -1.89 16 16 C -0.18 -3.12 6.27 -104.10 -0.65 -3.77 16 17 C -0.07 -1.05 9.70 -39.72 -0.39 -1.43 16 18 C -0.14 -1.90 5.89 -104.56 -0.62 -2.51 16 19 C -0.10 -1.01 10.02 36.01 0.36 -0.65 16 20 C -0.09 -1.26 9.68 -39.68 -0.38 -1.64 16 21 C -0.15 -2.59 10.06 -39.31 -0.40 -2.98 16 22 C 0.12 2.39 7.04 -38.95 -0.27 2.11 16 23 O -0.25 -5.95 10.36 -21.00 -0.22 -6.17 16 24 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.02 0.40 8.11 -51.93 -0.42 -0.03 16 28 H 0.10 2.58 5.43 -51.93 -0.28 2.30 16 29 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 30 H 0.06 1.01 8.07 -51.93 -0.42 0.59 16 31 H 0.05 1.10 8.04 -51.93 -0.42 0.68 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.08 1.25 7.92 -51.93 -0.41 0.84 16 34 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 37 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 38 H 0.12 1.44 8.06 -52.48 -0.42 1.01 16 39 H 0.13 2.20 8.06 -52.49 -0.42 1.77 16 LS Contribution 322.86 15.07 4.87 4.87 Total: -1.00 -30.65 322.86 -8.83 -39.48 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -6.15 Total: -0.54 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -2.51 Total: -14.75 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.21 Total: -39.90 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.22 Total: -6.17 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.65 -8.83 -39.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090898367.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.674 kcal (2) G-P(sol) polarization free energy of solvation -30.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds