Wall clock time and date at job start Mon Mar 30 2020 06:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47287 * 2 1 4 4 C 1.36937 * 119.99799 * 95.56158 * 3 2 1 5 5 H 1.07999 * 119.99872 * 214.93213 * 4 3 2 6 6 C 1.38807 * 120.00291 * 34.92710 * 4 3 2 7 7 N 1.31616 * 120.00177 * 22.44801 * 6 4 3 8 8 Si 1.86800 * 120.00039 * 202.45165 * 6 4 3 9 9 H 1.48498 * 109.47176 * 265.10127 * 8 6 4 10 10 H 1.48497 * 109.47370 * 25.10280 * 8 6 4 11 11 H 1.48500 * 109.47370 * 145.09922 * 8 6 4 12 12 C 1.46500 * 120.00059 * 275.55775 * 3 2 1 13 13 C 1.53000 * 109.46904 * 269.99865 * 12 3 2 14 14 H 1.09001 * 110.66675 * 59.30433 * 13 12 3 15 15 C 1.54708 * 110.74773 * 182.51527 * 13 12 3 16 16 C 1.51644 * 101.92896 * 143.61057 * 15 13 12 17 17 C 1.37733 * 132.18271 * 164.60604 * 16 15 13 18 18 C 1.38351 * 119.98051 * 180.39833 * 17 16 15 19 19 C 1.50703 * 120.11409 * 179.97438 * 18 17 16 20 20 C 1.38284 * 119.76755 * 359.94187 * 18 17 16 21 21 C 1.37931 * 120.35127 * 359.87539 * 20 18 17 22 22 C 1.38885 * 107.03766 * 344.62109 * 16 15 13 23 23 O 1.36393 * 111.32166 * 359.07632 * 22 16 15 24 24 H 1.09002 * 109.47294 * 59.99636 * 1 2 3 25 25 H 1.08998 * 109.47715 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47346 * 299.99949 * 1 2 3 27 27 H 1.09004 * 109.47114 * 239.99608 * 2 1 3 28 28 H 1.09002 * 109.47294 * 120.00363 * 2 1 3 29 29 H 0.97001 * 120.00317 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.46790 * 30.00071 * 12 3 2 31 31 H 1.08998 * 109.46928 * 150.00066 * 12 3 2 32 32 H 1.09005 * 110.94073 * 261.77018 * 15 13 12 33 33 H 1.09004 * 110.93830 * 25.44815 * 15 13 12 34 34 H 1.08007 * 120.01282 * 0.34793 * 17 16 15 35 35 H 1.09003 * 109.46995 * 269.97732 * 19 18 17 36 36 H 1.08993 * 109.47255 * 29.97335 * 19 18 17 37 37 H 1.08995 * 109.47086 * 149.98233 * 19 18 17 38 38 H 1.08008 * 119.82357 * 179.85449 * 20 18 17 39 39 H 1.08000 * 119.88051 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3549 1.9884 1.1804 5 1 2.1714 3.0440 1.3161 6 6 2.9318 1.2471 2.2024 7 7 3.5546 0.1206 1.9277 8 14 2.8243 1.8484 3.9677 9 1 4.0517 2.6127 4.3059 10 1 1.6366 2.7266 4.1201 11 1 2.6990 0.6839 4.8806 12 6 2.1467 2.1128 -1.2628 13 6 3.5450 1.8888 -1.8420 14 1 3.7232 0.8279 -2.0178 15 6 3.7344 2.6997 -3.1458 16 6 5.1876 3.1213 -3.0444 17 6 6.0724 3.6219 -3.9737 18 6 7.3709 3.9203 -3.6013 19 6 8.3417 4.4676 -4.6157 20 6 7.7748 3.7152 -2.2947 21 6 6.8893 3.2175 -1.3615 22 6 5.5795 2.9173 -1.7277 23 8 4.5502 2.4370 -0.9726 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.9574 -0.3976 2.6419 30 1 1.3988 1.7524 -1.9690 31 1 1.9939 3.1770 -1.0832 32 1 3.5711 2.0723 -4.0221 33 1 3.0769 3.5690 -3.1630 34 1 5.7528 3.7807 -4.9932 35 1 8.8647 3.6428 -5.1000 36 1 7.7983 5.0430 -5.3651 37 1 9.0644 5.1125 -4.1160 38 1 8.7890 3.9456 -2.0035 39 1 7.2129 3.0599 -0.3432 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090898367.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:48 Heat of formation + Delta-G solvation = -8.449229 kcal Electronic energy + Delta-G solvation = -19741.310451 eV Core-core repulsion = 16842.007915 eV Total energy + Delta-G solvation = -2899.302536 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.90644 -38.81389 -37.51054 -33.96987 -33.32143 -32.78240 -31.73561 -30.07497 -27.72472 -26.80958 -25.19505 -23.31308 -22.77321 -21.95790 -21.42601 -18.74818 -18.13704 -17.51447 -16.98778 -16.21561 -15.94621 -15.60002 -15.50928 -15.04001 -14.49329 -14.40820 -14.06146 -13.97049 -13.92483 -13.51738 -13.24133 -13.06940 -12.82857 -12.76811 -12.59855 -12.45429 -12.40342 -12.34577 -11.91990 -11.71774 -11.57997 -11.44495 -11.35211 -10.46745 -9.79628 -8.82005 -8.55606 -7.80559 -5.34705 0.38843 0.46907 1.42599 1.44534 1.54246 2.49836 2.59350 2.80634 3.28520 3.56108 3.56557 3.89531 4.03174 4.11308 4.14127 4.34413 4.44811 4.50939 4.56123 4.62746 4.73592 4.80448 4.81257 4.91890 4.94335 4.95882 5.00029 5.12534 5.16118 5.23292 5.28364 5.40350 5.52718 5.58253 5.67402 5.70327 5.85976 5.93230 6.46288 6.52812 7.21465 7.89260 8.39267 9.19102 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.023834 B = 0.005810 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.513405 B = 4817.790693 C = 5685.683983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.138 3.862 3 N -0.595 5.595 4 C -0.247 4.247 5 H 0.049 0.951 6 C -0.036 4.036 7 N -0.916 5.916 8 Si 0.949 3.051 9 H -0.293 1.293 10 H -0.270 1.270 11 H -0.289 1.289 12 C 0.148 3.852 13 C 0.063 3.937 14 H 0.050 0.950 15 C -0.092 4.092 16 C -0.185 4.185 17 C -0.073 4.073 18 C -0.126 4.126 19 C -0.100 4.100 20 C -0.087 4.087 21 C -0.167 4.167 22 C 0.066 3.934 23 O -0.305 6.305 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.033 0.967 27 H 0.023 0.977 28 H 0.061 0.939 29 H 0.247 0.753 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.151 0.849 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.152 0.848 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.317 6.123 -14.595 16.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.013 3.987 3 N -0.315 5.315 4 C -0.378 4.378 5 H 0.066 0.934 6 C -0.233 4.233 7 N -0.561 5.561 8 Si 0.777 3.223 9 H -0.220 1.220 10 H -0.194 1.194 11 H -0.215 1.215 12 C 0.022 3.978 13 C 0.004 3.996 14 H 0.068 0.932 15 C -0.129 4.129 16 C -0.186 4.186 17 C -0.090 4.090 18 C -0.127 4.127 19 C -0.156 4.156 20 C -0.104 4.104 21 C -0.186 4.186 22 C 0.020 3.980 23 O -0.219 6.219 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.052 0.948 27 H 0.041 0.959 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.107 0.893 31 H 0.067 0.933 32 H 0.129 0.871 33 H 0.118 0.882 34 H 0.169 0.831 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.170 0.830 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.317 5.994 -14.233 16.035 hybrid contribution 0.114 -0.196 1.511 1.528 sum 4.431 5.798 -12.722 14.666 Atomic orbital electron populations 1.22127 0.97720 1.00384 1.00590 1.20852 0.92082 0.85662 1.00132 1.44074 1.73684 1.12062 1.01691 1.19061 1.33187 0.93938 0.91578 0.93366 1.25665 0.96919 0.98514 1.02180 1.70164 1.36600 1.17769 1.31519 0.85563 0.77761 0.77330 0.81618 1.21999 1.19442 1.21473 1.21288 0.91255 0.96738 0.88547 1.24290 0.91154 0.95987 0.88123 0.93199 1.21831 0.92158 1.00835 0.98102 1.21125 0.97230 1.06086 0.94158 1.20501 0.92042 0.97317 0.99179 1.20165 0.95323 1.01939 0.95246 1.20714 0.97239 1.01013 0.96666 1.21000 0.99401 0.97694 0.92339 1.20493 0.90450 1.06426 1.01238 1.20433 0.90315 0.95702 0.91542 1.87260 1.27994 1.73342 1.33326 0.92834 0.92290 0.94760 0.95898 0.92099 0.94430 0.89281 0.93343 0.87148 0.88188 0.83119 0.90425 0.90343 0.90562 0.83010 0.87156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.74 10.23 71.98 0.74 -5.01 16 2 C 0.14 6.58 5.95 86.38 0.51 7.10 16 3 N -0.59 -30.05 2.43 -702.02 -1.70 -31.76 16 4 C -0.25 -14.07 9.03 84.03 0.76 -13.31 16 5 H 0.05 2.80 7.92 -2.91 -0.02 2.78 16 6 C -0.04 -2.09 4.90 84.86 0.42 -1.68 16 7 N -0.92 -55.84 11.43 21.65 0.25 -55.59 16 8 Si 0.95 46.82 29.61 68.60 2.03 48.85 16 9 H -0.29 -14.55 7.11 99.48 0.71 -13.85 16 10 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 12 C 0.15 6.14 5.40 86.38 0.47 6.61 16 13 C 0.06 2.59 3.87 31.18 0.12 2.71 16 14 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 15 C -0.09 -2.79 6.65 30.73 0.20 -2.58 16 16 C -0.19 -6.14 6.27 -19.53 -0.12 -6.26 16 17 C -0.07 -1.88 9.70 22.18 0.22 -1.67 16 18 C -0.13 -3.04 5.89 -19.83 -0.12 -3.16 16 19 C -0.10 -1.50 10.02 71.24 0.71 -0.79 16 20 C -0.09 -2.39 9.68 22.21 0.21 -2.18 16 21 C -0.17 -6.15 10.06 22.45 0.23 -5.92 16 22 C 0.07 2.73 7.04 22.68 0.16 2.89 16 23 O -0.31 -15.13 10.36 -98.06 -1.02 -16.14 16 24 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.02 1.03 8.11 -2.39 -0.02 1.01 16 28 H 0.06 3.38 5.43 -2.39 -0.01 3.37 16 29 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 30 H 0.09 3.03 8.07 -2.39 -0.02 3.01 16 31 H 0.05 2.02 8.04 -2.39 -0.02 2.00 16 32 H 0.11 2.66 8.14 -2.38 -0.02 2.64 16 33 H 0.10 2.73 7.92 -2.39 -0.02 2.71 16 34 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 37 H 0.08 0.97 8.09 -2.39 -0.02 0.96 16 38 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 39 H 0.11 4.19 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -70.47 322.86 5.08 -65.40 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 1.01 Total: 12.48 kcal Atomic # 6 Polarization: -27.75 SS G_CDS: 4.51 Total: -23.24 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -1.46 Total: -87.35 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -1.02 Total: -16.14 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -70.47 5.08 -65.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090898367.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.948 kcal (2) G-P(sol) polarization free energy of solvation -70.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds