Wall clock time and date at job start Mon Mar 30 2020 06:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46903 * 109.47209 * 2 1 4 4 C 1.46904 * 110.99659 * 166.39165 * 3 2 1 5 5 C 1.50696 * 109.47235 * 288.11716 * 4 3 2 6 6 H 1.08005 * 120.00172 * 4.77526 * 5 4 3 7 7 C 1.37875 * 120.00147 * 184.76664 * 5 4 3 8 8 N 1.31515 * 119.99827 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00407 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47081 * 90.00291 * 9 7 5 11 11 H 1.48493 * 109.47127 * 210.00239 * 9 7 5 12 12 H 1.48502 * 109.46719 * 330.00570 * 9 7 5 13 13 C 1.46895 * 110.99873 * 290.34528 * 3 2 1 14 14 C 1.52999 * 109.46963 * 164.15656 * 13 3 2 15 15 H 1.09005 * 110.82923 * 50.37364 * 14 13 3 16 16 C 1.54706 * 110.94305 * 286.62491 * 14 13 3 17 17 O 1.43778 * 102.78185 * 267.12553 * 16 14 13 18 18 C 1.36138 * 109.24070 * 332.25888 * 17 16 14 19 19 C 1.39281 * 129.88285 * 198.39977 * 18 17 16 20 20 C 1.37930 * 120.24132 * 181.01147 * 19 18 17 21 21 C 1.38288 * 120.34830 * 359.95167 * 20 19 18 22 22 C 1.38351 * 119.76630 * 359.88708 * 21 20 19 23 23 C 1.37742 * 119.97929 * 359.95838 * 22 21 20 24 24 H 1.09000 * 109.47170 * 186.14825 * 1 2 3 25 25 H 1.08999 * 109.46345 * 306.14935 * 1 2 3 26 26 H 1.08999 * 109.46781 * 66.14509 * 1 2 3 27 27 H 1.09007 * 109.46773 * 240.00025 * 2 1 3 28 28 H 1.09004 * 109.47112 * 120.00426 * 2 1 3 29 29 H 1.09001 * 109.47019 * 48.12133 * 4 3 2 30 30 H 1.08997 * 109.46482 * 168.11948 * 4 3 2 31 31 H 0.97004 * 120.00201 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47548 * 284.15886 * 13 3 2 33 33 H 1.09004 * 109.47509 * 44.16079 * 13 3 2 34 34 H 1.08993 * 110.74653 * 25.44776 * 16 14 13 35 35 H 1.08997 * 110.75134 * 148.80536 * 16 14 13 36 36 H 1.08001 * 119.88021 * 0.98317 * 19 18 17 37 37 H 1.08001 * 119.82326 * 179.97438 * 20 19 18 38 38 H 1.07998 * 120.11054 * 179.88375 * 21 20 19 39 39 H 1.07995 * 120.00417 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4520 1.4369 0.3227 5 6 3.6498 1.1204 1.7827 6 1 2.8067 0.8272 2.3908 7 6 4.9070 1.2050 2.3423 8 7 5.9336 1.5623 1.6020 9 14 5.1524 0.8120 4.1519 10 1 5.4515 -0.6342 4.3082 11 1 6.2850 1.6120 4.6830 12 1 3.9155 1.1456 4.9029 13 6 1.7457 2.0402 -1.2858 14 6 1.8973 3.5546 -1.1290 15 1 2.8462 3.8019 -0.6530 16 6 0.7090 4.1503 -0.3375 17 8 -0.2073 4.5310 -1.3780 18 6 0.4923 4.8100 -2.5120 19 6 0.1106 5.5275 -3.6432 20 6 0.9838 5.6730 -4.7009 21 6 2.2455 5.1093 -4.6480 22 6 2.6335 4.3980 -3.5266 23 6 1.7642 4.2541 -2.4679 24 1 -0.3633 -1.0218 0.1101 25 1 -0.3632 0.6062 0.8299 26 1 -0.3633 0.4156 -0.9399 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 3.9877 0.7063 -0.2834 30 1 3.8358 2.4351 0.1121 31 1 6.8181 1.6222 1.9957 32 1 2.4510 1.6801 -2.0348 33 1 0.7290 1.8078 -1.6027 34 1 0.2632 3.3985 0.3136 35 1 1.0251 5.0214 0.2363 36 1 -0.8728 5.9711 -3.6924 37 1 0.6806 6.2304 -5.5749 38 1 2.9254 5.2241 -5.4792 39 1 3.6178 3.9558 -3.4814 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092301610.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:53 Heat of formation + Delta-G solvation = -5.836363 kcal Electronic energy + Delta-G solvation = -19696.565421 eV Core-core repulsion = 16797.376188 eV Total energy + Delta-G solvation = -2899.189233 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.98903 -37.38073 -36.89634 -33.02309 -32.55064 -30.25801 -29.80133 -29.05344 -26.92668 -24.68711 -22.92026 -22.43021 -21.96077 -20.84778 -19.46535 -16.94964 -16.69735 -16.34127 -15.84815 -15.35202 -14.93067 -14.38284 -14.13716 -13.84620 -13.65728 -13.31338 -12.83495 -12.61776 -12.38932 -12.11350 -12.05733 -11.75290 -11.55097 -11.15202 -11.02855 -10.90350 -10.75518 -10.63470 -10.46839 -10.37862 -10.14160 -9.68245 -9.24017 -8.76559 -8.45163 -7.97574 -7.30727 -6.05152 -4.06266 1.40790 1.49654 3.29957 3.36633 3.40635 3.52455 3.84147 4.39188 4.60705 4.84957 4.98159 5.10538 5.12957 5.30934 5.38390 5.43701 5.48406 5.64256 5.70110 5.83671 5.88158 5.96281 6.04634 6.06350 6.16209 6.25889 6.30466 6.42406 6.47999 6.55677 6.64640 6.66615 6.74239 6.76842 7.21904 7.31047 7.37840 7.78526 8.06822 8.17957 8.50792 9.01400 9.58065 11.05562 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.023731 B = 0.005223 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.606450 B = 5359.246850 C = 5847.768604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.058 3.942 3 N -0.536 5.536 4 C 0.190 3.810 5 C -0.505 4.505 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.896 3.104 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.069 3.931 14 C -0.072 4.072 15 H 0.106 0.894 16 C 0.064 3.936 17 O -0.309 6.309 18 C 0.109 3.891 19 C -0.147 4.147 20 C -0.092 4.092 21 C -0.155 4.155 22 C -0.067 4.067 23 C -0.160 4.160 24 H 0.048 0.952 25 H 0.060 0.940 26 H 0.044 0.956 27 H 0.017 0.983 28 H 0.083 0.917 29 H -0.012 1.012 30 H 0.035 0.965 31 H 0.261 0.739 32 H 0.028 0.972 33 H 0.066 0.934 34 H 0.119 0.881 35 H 0.073 0.927 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.383 5.345 -9.861 14.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.070 4.070 3 N -0.261 5.261 4 C 0.065 3.935 5 C -0.543 4.543 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.198 1.198 13 C -0.060 4.060 14 C -0.091 4.091 15 H 0.124 0.876 16 C -0.011 4.011 17 O -0.223 6.223 18 C 0.063 3.937 19 C -0.166 4.166 20 C -0.110 4.110 21 C -0.173 4.173 22 C -0.086 4.086 23 C -0.161 4.161 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.036 0.964 28 H 0.102 0.898 29 H 0.005 0.995 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.084 0.916 34 H 0.137 0.863 35 H 0.091 0.909 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.679 5.626 -9.410 14.625 hybrid contribution 1.004 -0.678 0.376 1.269 sum -8.675 4.947 -9.034 13.466 Atomic orbital electron populations 1.21833 0.96556 1.00555 1.01440 1.21937 0.94112 0.90192 1.00764 1.62131 1.21355 1.15354 1.27241 1.19788 0.80635 0.96819 0.96270 1.21151 0.93485 1.45241 0.94472 0.91872 1.24980 0.95996 0.95486 0.98111 1.69954 0.99708 1.48320 1.35908 0.86523 0.77787 0.78188 0.85085 1.20779 1.21298 1.19763 1.21925 1.00155 0.91766 0.92123 1.21430 1.00967 0.95699 0.90971 0.87589 1.23891 0.88495 0.99762 0.88909 1.86804 1.33524 1.82822 1.19189 1.19665 0.90747 0.94410 0.88834 1.20196 1.01310 1.02349 0.92760 1.20792 0.93569 0.99146 0.97453 1.20988 0.96879 1.01061 0.98380 1.20406 0.99016 0.97289 0.91852 1.20935 0.95614 1.01599 0.97957 0.93278 0.92082 0.93719 0.96441 0.89826 0.99466 0.94740 0.92939 0.95334 0.91579 0.86284 0.90892 0.85879 0.85621 0.85823 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.82 37.16 0.36 -1.89 16 2 C 0.06 1.10 5.52 -3.82 -0.02 1.08 16 3 N -0.54 -11.05 4.22 -236.06 -1.00 -12.04 16 4 C 0.19 4.76 4.58 -4.98 -0.02 4.74 16 5 C -0.50 -13.76 8.48 -34.44 -0.29 -14.05 16 6 H 0.06 1.71 7.45 -52.48 -0.39 1.32 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.23 13.29 55.43 0.74 -25.50 16 9 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 C 0.07 1.25 4.21 -3.83 -0.02 1.24 16 14 C -0.07 -1.24 3.14 -90.41 -0.28 -1.52 16 15 H 0.11 2.03 6.42 -51.93 -0.33 1.70 16 16 C 0.06 1.02 7.50 38.06 0.29 1.31 16 17 O -0.31 -5.06 11.10 -20.18 -0.22 -5.28 16 18 C 0.11 1.70 7.04 -38.96 -0.27 1.43 16 19 C -0.15 -1.93 10.06 -39.31 -0.40 -2.33 16 20 C -0.09 -1.05 10.02 -39.68 -0.40 -1.44 16 21 C -0.15 -1.86 10.07 -39.52 -0.40 -2.26 16 22 C -0.07 -0.96 10.03 -39.72 -0.40 -1.36 16 23 C -0.16 -2.55 5.63 -104.10 -0.59 -3.13 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.04 0.66 6.67 -51.93 -0.35 0.31 16 27 H 0.02 0.33 8.08 -51.93 -0.42 -0.09 16 28 H 0.08 1.72 6.98 -51.93 -0.36 1.35 16 29 H -0.01 -0.34 8.05 -51.93 -0.42 -0.76 16 30 H 0.03 0.92 6.24 -51.93 -0.32 0.59 16 31 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.03 0.54 8.05 -51.93 -0.42 0.12 16 33 H 0.07 1.14 6.22 -51.93 -0.32 0.82 16 34 H 0.12 1.92 7.81 -51.93 -0.41 1.51 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.12 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 317.96 15.07 4.79 4.79 Total: -1.00 -29.24 317.96 -9.08 -38.32 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -5.84 Total: 0.18 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -2.53 Total: -16.76 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: -0.26 Total: -37.54 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.22 Total: -5.28 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.24 -9.08 -38.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092301610.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.484 kcal (2) G-P(sol) polarization free energy of solvation -29.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds