Wall clock time and date at job start Mon Mar 30 2020 06:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46903 * 109.47209 * 2 1 4 4 C 1.46904 * 110.99659 * 166.39165 * 3 2 1 5 5 C 1.50696 * 109.47235 * 288.11716 * 4 3 2 6 6 H 1.08005 * 120.00172 * 4.77526 * 5 4 3 7 7 C 1.37875 * 120.00147 * 184.76664 * 5 4 3 8 8 N 1.31515 * 119.99827 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00407 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47081 * 90.00291 * 9 7 5 11 11 H 1.48493 * 109.47127 * 210.00239 * 9 7 5 12 12 H 1.48502 * 109.46719 * 330.00570 * 9 7 5 13 13 C 1.46895 * 110.99873 * 290.34528 * 3 2 1 14 14 C 1.52999 * 109.46963 * 164.15656 * 13 3 2 15 15 H 1.09005 * 110.82923 * 50.37364 * 14 13 3 16 16 C 1.54706 * 110.94305 * 286.62491 * 14 13 3 17 17 O 1.43778 * 102.78185 * 267.12553 * 16 14 13 18 18 C 1.36138 * 109.24070 * 332.25888 * 17 16 14 19 19 C 1.39281 * 129.88285 * 198.39977 * 18 17 16 20 20 C 1.37930 * 120.24132 * 181.01147 * 19 18 17 21 21 C 1.38288 * 120.34830 * 359.95167 * 20 19 18 22 22 C 1.38351 * 119.76630 * 359.88708 * 21 20 19 23 23 C 1.37742 * 119.97929 * 359.95838 * 22 21 20 24 24 H 1.09000 * 109.47170 * 186.14825 * 1 2 3 25 25 H 1.08999 * 109.46345 * 306.14935 * 1 2 3 26 26 H 1.08999 * 109.46781 * 66.14509 * 1 2 3 27 27 H 1.09007 * 109.46773 * 240.00025 * 2 1 3 28 28 H 1.09004 * 109.47112 * 120.00426 * 2 1 3 29 29 H 1.09001 * 109.47019 * 48.12133 * 4 3 2 30 30 H 1.08997 * 109.46482 * 168.11948 * 4 3 2 31 31 H 0.97004 * 120.00201 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47548 * 284.15886 * 13 3 2 33 33 H 1.09004 * 109.47509 * 44.16079 * 13 3 2 34 34 H 1.08993 * 110.74653 * 25.44776 * 16 14 13 35 35 H 1.08997 * 110.75134 * 148.80536 * 16 14 13 36 36 H 1.08001 * 119.88021 * 0.98317 * 19 18 17 37 37 H 1.08001 * 119.82326 * 179.97438 * 20 19 18 38 38 H 1.07998 * 120.11054 * 179.88375 * 21 20 19 39 39 H 1.07995 * 120.00417 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4520 1.4369 0.3227 5 6 3.6498 1.1204 1.7827 6 1 2.8067 0.8272 2.3908 7 6 4.9070 1.2050 2.3423 8 7 5.9336 1.5623 1.6020 9 14 5.1524 0.8120 4.1519 10 1 5.4515 -0.6342 4.3082 11 1 6.2850 1.6120 4.6830 12 1 3.9155 1.1456 4.9029 13 6 1.7457 2.0402 -1.2858 14 6 1.8973 3.5546 -1.1290 15 1 2.8462 3.8019 -0.6530 16 6 0.7090 4.1503 -0.3375 17 8 -0.2073 4.5310 -1.3780 18 6 0.4923 4.8100 -2.5120 19 6 0.1106 5.5275 -3.6432 20 6 0.9838 5.6730 -4.7009 21 6 2.2455 5.1093 -4.6480 22 6 2.6335 4.3980 -3.5266 23 6 1.7642 4.2541 -2.4679 24 1 -0.3633 -1.0218 0.1101 25 1 -0.3632 0.6062 0.8299 26 1 -0.3633 0.4156 -0.9399 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 3.9877 0.7063 -0.2834 30 1 3.8358 2.4351 0.1121 31 1 6.8181 1.6222 1.9957 32 1 2.4510 1.6801 -2.0348 33 1 0.7290 1.8078 -1.6027 34 1 0.2632 3.3985 0.3136 35 1 1.0251 5.0214 0.2363 36 1 -0.8728 5.9711 -3.6924 37 1 0.6806 6.2304 -5.5749 38 1 2.9254 5.2241 -5.4792 39 1 3.6178 3.9558 -3.4814 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092301610.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:53 Heat of formation + Delta-G solvation = -22.797700 kcal Electronic energy + Delta-G solvation = -19697.300920 eV Core-core repulsion = 16797.376188 eV Total energy + Delta-G solvation = -2899.924732 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.18106 -38.79213 -38.20423 -34.87589 -34.09062 -31.63512 -31.00167 -30.37154 -28.68945 -26.27587 -24.36139 -24.01840 -23.07486 -22.14998 -21.04567 -18.63663 -18.10292 -17.63940 -17.14560 -16.78472 -16.51113 -15.89003 -15.78860 -15.27440 -14.91585 -14.52321 -14.30101 -14.03451 -13.90740 -13.63984 -13.43215 -13.19955 -12.88522 -12.69459 -12.64729 -12.46638 -12.36857 -12.18698 -11.95116 -11.69262 -11.61521 -11.45414 -11.21272 -10.60090 -9.83991 -9.14890 -9.02056 -8.19770 -6.29103 0.34909 0.43624 1.41349 1.42233 1.53883 2.36640 2.40367 2.76773 3.10016 3.18395 3.60126 3.67143 3.94754 3.98404 4.17399 4.23944 4.29968 4.44680 4.47011 4.53388 4.58154 4.64604 4.70582 4.74344 4.79579 4.91491 5.05979 5.12608 5.14606 5.15294 5.30560 5.41521 5.42746 5.52400 5.57559 5.66653 5.71346 6.06485 6.25134 6.35757 6.58994 6.86514 7.40326 8.91189 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.023731 B = 0.005223 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.606450 B = 5359.246850 C = 5847.768604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.054 3.946 3 N -0.535 5.535 4 C 0.207 3.793 5 C -0.518 4.518 6 H 0.063 0.937 7 C 0.003 3.997 8 N -0.935 5.935 9 Si 0.966 3.034 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.078 3.922 14 C -0.071 4.071 15 H 0.075 0.925 16 C 0.070 3.930 17 O -0.316 6.316 18 C 0.085 3.915 19 C -0.147 4.147 20 C -0.081 4.081 21 C -0.148 4.148 22 C -0.086 4.086 23 C -0.183 4.183 24 H 0.073 0.927 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.016 0.984 28 H 0.063 0.937 29 H -0.045 1.045 30 H 0.013 0.987 31 H 0.263 0.737 32 H 0.015 0.985 33 H 0.081 0.919 34 H 0.117 0.883 35 H 0.079 0.921 36 H 0.145 0.855 37 H 0.167 0.833 38 H 0.154 0.846 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.980 5.992 -10.692 16.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.074 4.074 3 N -0.260 5.260 4 C 0.081 3.919 5 C -0.556 4.556 6 H 0.082 0.918 7 C -0.195 4.195 8 N -0.576 5.576 9 Si 0.791 3.209 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.188 1.188 13 C -0.050 4.050 14 C -0.090 4.090 15 H 0.093 0.907 16 C -0.005 4.005 17 O -0.231 6.231 18 C 0.040 3.960 19 C -0.165 4.165 20 C -0.098 4.098 21 C -0.165 4.165 22 C -0.104 4.104 23 C -0.184 4.184 24 H 0.092 0.908 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.034 0.966 28 H 0.082 0.918 29 H -0.028 1.028 30 H 0.031 0.969 31 H 0.072 0.928 32 H 0.033 0.967 33 H 0.099 0.901 34 H 0.135 0.865 35 H 0.097 0.903 36 H 0.163 0.837 37 H 0.185 0.815 38 H 0.172 0.828 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.299 6.268 -10.252 16.495 hybrid contribution 1.505 -0.847 0.494 1.796 sum -9.794 5.422 -9.759 14.851 Atomic orbital electron populations 1.21726 0.93231 1.02269 1.01858 1.22016 0.96754 0.88852 0.99744 1.62101 1.18205 1.16769 1.28897 1.19424 0.83023 0.94394 0.95102 1.21445 0.93709 1.45088 0.95368 0.91836 1.25871 0.95644 0.95178 1.02822 1.70085 1.00210 1.49324 1.37985 0.85424 0.77925 0.78162 0.79375 1.19979 1.20921 1.18808 1.21897 1.00351 0.92371 0.90431 1.21278 1.00052 0.95169 0.92509 0.90650 1.23785 0.87927 0.99845 0.88905 1.86768 1.33538 1.83266 1.19521 1.19968 0.90689 0.95890 0.89472 1.20615 1.02621 1.01302 0.91988 1.21286 0.92593 0.97959 0.97977 1.21376 0.97771 0.99391 0.98004 1.20603 0.98857 0.98304 0.92616 1.20896 0.96765 1.02931 0.97803 0.90782 0.92233 0.92790 0.96550 0.91804 1.02762 0.96930 0.92783 0.96668 0.90071 0.86514 0.90287 0.83692 0.81545 0.82848 0.86280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.92 9.82 71.98 0.71 -3.22 16 2 C 0.05 2.08 5.52 86.30 0.48 2.55 16 3 N -0.54 -22.87 4.22 -900.77 -3.80 -26.66 16 4 C 0.21 10.95 4.58 85.56 0.39 11.34 16 5 C -0.52 -29.05 8.48 25.60 0.22 -28.83 16 6 H 0.06 3.49 7.45 -2.91 -0.02 3.47 16 7 C 0.00 0.15 5.46 84.65 0.46 0.62 16 8 N -0.94 -56.18 13.29 21.45 0.28 -55.89 16 9 Si 0.97 44.12 29.54 68.60 2.03 46.14 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 12 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 13 C 0.08 2.92 4.21 86.30 0.36 3.29 16 14 C -0.07 -2.57 3.14 -10.66 -0.03 -2.60 16 15 H 0.08 3.14 6.42 -2.38 -0.02 3.13 16 16 C 0.07 2.28 7.50 72.56 0.54 2.83 16 17 O -0.32 -10.22 11.10 -95.12 -1.06 -11.27 16 18 C 0.08 2.58 7.04 22.67 0.16 2.74 16 19 C -0.15 -3.44 10.06 22.45 0.23 -3.22 16 20 C -0.08 -1.54 10.02 22.21 0.22 -1.31 16 21 C -0.15 -3.16 10.07 22.31 0.22 -2.94 16 22 C -0.09 -2.43 10.03 22.18 0.22 -2.21 16 23 C -0.18 -5.91 5.63 -19.53 -0.11 -6.02 16 24 H 0.07 1.82 8.14 -2.39 -0.02 1.81 16 25 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.05 1.49 6.67 -2.39 -0.02 1.47 16 27 H 0.02 0.62 8.08 -2.38 -0.02 0.60 16 28 H 0.06 2.68 6.98 -2.38 -0.02 2.66 16 29 H -0.05 -2.64 8.05 -2.39 -0.02 -2.66 16 30 H 0.01 0.72 6.24 -2.39 -0.01 0.70 16 31 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 32 H 0.02 0.60 8.05 -2.39 -0.02 0.58 16 33 H 0.08 2.80 6.22 -2.38 -0.01 2.79 16 34 H 0.12 3.81 7.81 -2.39 -0.02 3.79 16 35 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 37 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 38 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 39 H 0.12 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -64.69 317.96 2.55 -62.14 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 1.02 Total: 12.54 kcal Atomic # 6 Polarization: -31.06 SS G_CDS: 4.07 Total: -26.99 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -3.51 Total: -82.56 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -1.06 Total: -11.27 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -64.69 2.55 -62.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092301610.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.340 kcal (2) G-P(sol) polarization free energy of solvation -64.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds