Wall clock time and date at job start Mon Mar 30 2020 06:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47083 * 2 1 4 4 C 1.50705 * 109.46510 * 119.99198 * 2 1 3 5 5 H 1.08002 * 119.99852 * 120.00255 * 4 2 1 6 6 C 1.37878 * 119.99901 * 299.99878 * 4 2 1 7 7 N 1.31517 * 120.00193 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99551 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47536 * 60.00371 * 8 6 4 10 10 H 1.48509 * 109.47125 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47266 * 299.99907 * 8 6 4 12 12 N 1.46894 * 109.47419 * 239.99407 * 2 1 3 13 13 C 1.46900 * 111.00089 * 183.96163 * 12 2 1 14 14 C 1.46900 * 111.00383 * 60.00036 * 12 2 1 15 15 C 1.52997 * 109.46997 * 198.60981 * 14 12 2 16 16 H 1.09003 * 110.83319 * 308.90249 * 15 14 12 17 17 C 1.54706 * 110.93515 * 185.19942 * 15 14 12 18 18 O 1.43773 * 102.95263 * 266.99458 * 17 15 14 19 19 C 1.36382 * 109.09982 * 332.51356 * 18 17 15 20 20 C 1.39285 * 129.80718 * 198.26030 * 19 18 17 21 21 C 1.37922 * 120.24570 * 180.78912 * 20 19 18 22 22 C 1.38290 * 120.35200 * 0.04326 * 21 20 19 23 23 C 1.38346 * 119.76506 * 359.81255 * 22 21 20 24 24 C 1.37750 * 119.97987 * 359.97438 * 23 22 21 25 25 H 1.09000 * 109.47645 * 300.00953 * 1 2 3 26 26 H 1.09006 * 109.46921 * 60.00674 * 1 2 3 27 27 H 1.08998 * 109.47729 * 180.02562 * 1 2 3 28 28 H 0.96996 * 119.99546 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.46306 * 302.52175 * 13 12 2 30 30 H 1.08998 * 109.47432 * 62.52133 * 13 12 2 31 31 H 1.08996 * 109.47121 * 182.52872 * 13 12 2 32 32 H 1.08994 * 109.46837 * 78.60391 * 14 12 2 33 33 H 1.08998 * 109.46765 * 318.61163 * 14 12 2 34 34 H 1.09008 * 110.75033 * 25.40974 * 17 15 14 35 35 H 1.09001 * 110.75236 * 148.58244 * 17 15 14 36 36 H 1.08006 * 119.87550 * 0.83088 * 20 19 18 37 37 H 1.08006 * 119.82970 * 180.02562 * 21 20 19 38 38 H 1.07995 * 120.11912 * 179.83057 * 22 21 20 39 39 H 1.07999 * 120.01365 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1317 6 6 1.6990 -0.2390 2.4828 7 7 0.9426 0.8301 2.6033 8 14 2.3221 -1.1191 4.0081 9 1 3.8071 -1.1185 4.0081 10 1 1.8265 -0.4193 5.2206 11 1 1.8276 -2.5193 4.0085 12 7 2.0197 -0.6926 -1.1993 13 6 3.4851 -0.7947 -1.1867 14 6 1.5488 -0.0267 -2.4211 15 6 1.6659 -0.9896 -3.6042 16 1 2.6654 -1.4216 -3.6550 17 6 1.3014 -0.2822 -4.9309 18 8 -0.1002 -0.5685 -5.0742 19 6 -0.3832 -1.7421 -4.4397 20 6 -1.4801 -2.5890 -4.5787 21 6 -1.5750 -3.7340 -3.8155 22 6 -0.5833 -4.0512 -2.9054 23 6 0.5111 -3.2169 -2.7633 24 6 0.6099 -2.0751 -3.5276 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 0.7085 1.1618 3.4842 29 1 3.9181 0.2029 -1.1137 30 1 3.8005 -1.3913 -0.3308 31 1 3.8240 -1.2714 -2.1065 32 1 2.1573 0.8575 -2.6105 33 1 0.5073 0.2693 -2.2951 34 1 1.4703 0.7920 -4.8549 35 1 1.8683 -0.7029 -5.7614 36 1 -2.2591 -2.3486 -5.2872 37 1 -2.4283 -4.3862 -3.9291 38 1 -0.6627 -4.9473 -2.3078 39 1 1.2880 -3.4610 -2.0541 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092301660.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:37 Heat of formation + Delta-G solvation = 4.889586 kcal Electronic energy + Delta-G solvation = -20101.535571 eV Core-core repulsion = 17202.811450 eV Total energy + Delta-G solvation = -2898.724121 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.94551 -37.19910 -36.96226 -33.43184 -32.02051 -29.85921 -29.37149 -28.95090 -26.61615 -24.58774 -23.51350 -22.63415 -21.81507 -20.46471 -19.32153 -16.93726 -16.57152 -16.28586 -15.74044 -15.34767 -15.06225 -14.17052 -13.85784 -13.78145 -13.38258 -13.17074 -12.93842 -12.40227 -12.31401 -12.10944 -11.87425 -11.47158 -11.26331 -11.10334 -10.92215 -10.85495 -10.60805 -10.48693 -10.24116 -10.07160 -10.03741 -9.74771 -8.88626 -8.54988 -8.41263 -7.88591 -7.17273 -6.00690 -4.05384 1.60118 1.69136 3.31445 3.36161 3.38514 3.48549 4.01149 4.38019 4.56557 4.80546 5.08044 5.15704 5.25519 5.28557 5.37009 5.48875 5.60720 5.62807 5.79224 5.85879 5.94129 6.02069 6.14781 6.33433 6.39683 6.44447 6.58249 6.73905 6.74639 6.86023 6.88168 6.89236 7.09064 7.16717 7.44660 7.53367 7.72946 7.82901 8.21275 8.32596 8.59621 9.00613 9.59529 11.06163 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.024571 B = 0.005852 C = 0.005371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.266241 B = 4783.799259 C = 5212.207355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.214 3.786 3 H -0.004 1.004 4 C -0.503 4.503 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.532 5.532 13 C 0.037 3.963 14 C 0.061 3.939 15 C -0.074 4.074 16 H 0.093 0.907 17 C 0.054 3.946 18 O -0.308 6.308 19 C 0.094 3.906 20 C -0.147 4.147 21 C -0.094 4.094 22 C -0.152 4.152 23 C -0.045 4.045 24 C -0.136 4.136 25 H 0.084 0.916 26 H 0.007 0.993 27 H 0.034 0.966 28 H 0.261 0.739 29 H 0.012 0.988 30 H 0.074 0.926 31 H 0.041 0.959 32 H 0.028 0.972 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.438 -5.484 -13.452 14.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.109 3.891 3 H 0.014 0.986 4 C -0.541 4.541 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.256 5.256 13 C -0.111 4.111 14 C -0.068 4.068 15 C -0.093 4.093 16 H 0.111 0.889 17 C -0.022 4.022 18 O -0.222 6.222 19 C 0.049 3.951 20 C -0.166 4.166 21 C -0.112 4.112 22 C -0.171 4.171 23 C -0.063 4.063 24 C -0.137 4.137 25 H 0.102 0.898 26 H 0.026 0.974 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.030 0.970 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.098 0.902 34 H 0.121 0.879 35 H 0.091 0.909 36 H 0.138 0.862 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.853 -5.670 -13.406 14.581 hybrid contribution 0.760 0.472 1.014 1.352 sum -0.092 -5.198 -12.392 13.438 Atomic orbital electron populations 1.21841 0.97706 0.99658 0.99660 1.19221 0.92278 0.91838 0.85792 0.98627 1.21098 1.31052 1.12247 0.89738 0.91957 1.24932 0.95213 0.95079 0.99004 1.69886 1.36850 1.23036 1.23500 0.86595 0.79022 0.79780 0.82189 1.20385 1.21378 1.20235 1.62047 1.08935 1.52688 1.01955 1.22231 0.88976 0.99305 1.00615 1.22093 1.01559 0.93053 0.90093 1.21480 0.98809 0.94349 0.94645 0.88900 1.23851 0.79740 1.01738 0.96848 1.86854 1.26589 1.35696 1.73082 1.19678 0.96063 0.86528 0.92843 1.20114 0.98041 0.94692 1.03737 1.20763 0.98676 0.95965 0.95791 1.21041 0.94871 1.00870 1.00278 1.20416 0.97804 0.91943 0.96097 1.20543 0.97749 0.97087 0.98340 0.89752 0.97420 0.94700 0.92943 0.96963 0.90726 0.94063 0.95439 0.90232 0.87929 0.90891 0.86190 0.85813 0.85909 0.85171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 8.80 37.16 0.33 -2.94 16 2 C 0.21 5.40 2.06 -68.87 -0.14 5.26 16 3 H 0.00 -0.11 8.14 -51.93 -0.42 -0.53 16 4 C -0.50 -13.62 7.95 -34.44 -0.27 -13.90 16 5 H 0.06 1.67 6.40 -52.49 -0.34 1.33 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.57 11.32 55.43 0.63 -24.95 16 8 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.53 -11.13 4.49 -236.29 -1.06 -12.19 16 13 C 0.04 0.71 9.04 60.06 0.54 1.25 16 14 C 0.06 1.11 4.24 -3.83 -0.02 1.09 16 15 C -0.07 -1.12 3.18 -90.42 -0.29 -1.41 16 16 H 0.09 1.32 6.64 -51.93 -0.34 0.97 16 17 C 0.05 0.70 7.54 38.06 0.29 0.98 16 18 O -0.31 -4.85 11.13 -20.97 -0.23 -5.08 16 19 C 0.09 1.50 7.04 -38.95 -0.27 1.23 16 20 C -0.15 -2.10 10.06 -39.31 -0.40 -2.49 16 21 C -0.09 -1.23 10.02 -39.68 -0.40 -1.63 16 22 C -0.15 -2.15 10.07 -39.52 -0.40 -2.55 16 23 C -0.04 -0.71 10.03 -39.72 -0.40 -1.11 16 24 C -0.14 -2.23 5.54 -104.10 -0.58 -2.81 16 25 H 0.08 2.30 6.07 -51.93 -0.32 1.99 16 26 H 0.01 0.16 6.06 -51.93 -0.31 -0.15 16 27 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 1.51 6.33 -51.93 -0.33 1.18 16 31 H 0.04 0.65 6.57 -51.93 -0.34 0.31 16 32 H 0.03 0.48 7.98 -51.93 -0.41 0.06 16 33 H 0.08 1.60 5.53 -51.93 -0.29 1.31 16 34 H 0.10 1.17 7.90 -51.92 -0.41 0.76 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.12 1.47 8.06 -52.48 -0.42 1.04 16 37 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 38 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 39 H 0.13 2.14 8.06 -52.49 -0.42 1.71 16 LS Contribution 311.26 15.07 4.69 4.69 Total: -1.00 -29.42 311.26 -8.70 -38.13 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -5.61 Total: 0.65 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -2.10 Total: -17.50 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: -0.43 Total: -37.14 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.23 Total: -5.08 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.42 -8.70 -38.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092301660.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.016 kcal (2) G-P(sol) polarization free energy of solvation -29.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds