Wall clock time and date at job start Mon Mar 30 2020 06:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47083 * 2 1 4 4 C 1.50705 * 109.46510 * 119.99198 * 2 1 3 5 5 H 1.08002 * 119.99852 * 120.00255 * 4 2 1 6 6 C 1.37878 * 119.99901 * 299.99878 * 4 2 1 7 7 N 1.31517 * 120.00193 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99551 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47536 * 60.00371 * 8 6 4 10 10 H 1.48509 * 109.47125 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47266 * 299.99907 * 8 6 4 12 12 N 1.46894 * 109.47419 * 239.99407 * 2 1 3 13 13 C 1.46900 * 111.00089 * 183.96163 * 12 2 1 14 14 C 1.46900 * 111.00383 * 60.00036 * 12 2 1 15 15 C 1.52997 * 109.46997 * 198.60981 * 14 12 2 16 16 H 1.09003 * 110.83319 * 308.90249 * 15 14 12 17 17 C 1.54706 * 110.93515 * 185.19942 * 15 14 12 18 18 O 1.43773 * 102.95263 * 266.99458 * 17 15 14 19 19 C 1.36382 * 109.09982 * 332.51356 * 18 17 15 20 20 C 1.39285 * 129.80718 * 198.26030 * 19 18 17 21 21 C 1.37922 * 120.24570 * 180.78912 * 20 19 18 22 22 C 1.38290 * 120.35200 * 0.04326 * 21 20 19 23 23 C 1.38346 * 119.76506 * 359.81255 * 22 21 20 24 24 C 1.37750 * 119.97987 * 359.97438 * 23 22 21 25 25 H 1.09000 * 109.47645 * 300.00953 * 1 2 3 26 26 H 1.09006 * 109.46921 * 60.00674 * 1 2 3 27 27 H 1.08998 * 109.47729 * 180.02562 * 1 2 3 28 28 H 0.96996 * 119.99546 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.46306 * 302.52175 * 13 12 2 30 30 H 1.08998 * 109.47432 * 62.52133 * 13 12 2 31 31 H 1.08996 * 109.47121 * 182.52872 * 13 12 2 32 32 H 1.08994 * 109.46837 * 78.60391 * 14 12 2 33 33 H 1.08998 * 109.46765 * 318.61163 * 14 12 2 34 34 H 1.09008 * 110.75033 * 25.40974 * 17 15 14 35 35 H 1.09001 * 110.75236 * 148.58244 * 17 15 14 36 36 H 1.08006 * 119.87550 * 0.83088 * 20 19 18 37 37 H 1.08006 * 119.82970 * 180.02562 * 21 20 19 38 38 H 1.07995 * 120.11912 * 179.83057 * 22 21 20 39 39 H 1.07999 * 120.01365 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1317 6 6 1.6990 -0.2390 2.4828 7 7 0.9426 0.8301 2.6033 8 14 2.3221 -1.1191 4.0081 9 1 3.8071 -1.1185 4.0081 10 1 1.8265 -0.4193 5.2206 11 1 1.8276 -2.5193 4.0085 12 7 2.0197 -0.6926 -1.1993 13 6 3.4851 -0.7947 -1.1867 14 6 1.5488 -0.0267 -2.4211 15 6 1.6659 -0.9896 -3.6042 16 1 2.6654 -1.4216 -3.6550 17 6 1.3014 -0.2822 -4.9309 18 8 -0.1002 -0.5685 -5.0742 19 6 -0.3832 -1.7421 -4.4397 20 6 -1.4801 -2.5890 -4.5787 21 6 -1.5750 -3.7340 -3.8155 22 6 -0.5833 -4.0512 -2.9054 23 6 0.5111 -3.2169 -2.7633 24 6 0.6099 -2.0751 -3.5276 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 0.7085 1.1618 3.4842 29 1 3.9181 0.2029 -1.1137 30 1 3.8005 -1.3913 -0.3308 31 1 3.8240 -1.2714 -2.1065 32 1 2.1573 0.8575 -2.6105 33 1 0.5073 0.2693 -2.2951 34 1 1.4703 0.7920 -4.8549 35 1 1.8683 -0.7029 -5.7614 36 1 -2.2591 -2.3486 -5.2872 37 1 -2.4283 -4.3862 -3.9291 38 1 -0.6627 -4.9473 -2.3078 39 1 1.2880 -3.4610 -2.0541 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092301660.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:37 Heat of formation + Delta-G solvation = -12.514640 kcal Electronic energy + Delta-G solvation = -20102.290275 eV Core-core repulsion = 17202.811450 eV Total energy + Delta-G solvation = -2899.478825 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.08341 -38.76798 -38.18113 -35.19293 -33.57881 -31.21658 -30.85181 -30.30194 -28.23944 -26.46662 -25.03899 -23.87539 -22.92613 -21.89882 -21.02704 -18.40546 -18.00727 -17.70269 -17.01531 -16.88495 -16.40143 -15.86529 -15.42318 -15.23391 -14.78766 -14.55336 -14.24393 -14.02859 -13.63489 -13.41663 -13.37382 -12.98956 -12.91389 -12.67926 -12.57772 -12.36179 -12.12851 -12.01611 -11.96142 -11.92912 -11.60824 -11.29976 -10.88481 -10.51078 -9.69571 -9.06401 -8.85779 -8.11146 -6.23026 0.48619 0.55396 1.42247 1.44211 1.51486 2.40531 2.43249 2.88176 3.15751 3.22317 3.63303 3.88537 4.00836 4.05252 4.27750 4.36092 4.49369 4.53309 4.58024 4.62847 4.67352 4.69548 4.76976 4.82810 4.90293 4.98837 5.07009 5.10910 5.25930 5.29357 5.48642 5.49238 5.63146 5.71990 5.72604 5.77450 5.78331 6.23980 6.33987 6.40164 6.73462 6.92073 7.46274 8.95035 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.024571 B = 0.005852 C = 0.005371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.266241 B = 4783.799259 C = 5212.207355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.220 3.780 3 H -0.040 1.040 4 C -0.516 4.516 5 H 0.062 0.938 6 C 0.010 3.990 7 N -0.923 5.923 8 Si 0.960 3.040 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.272 1.272 12 N -0.534 5.534 13 C 0.041 3.959 14 C 0.065 3.935 15 C -0.069 4.069 16 H 0.105 0.895 17 C 0.056 3.944 18 O -0.323 6.323 19 C 0.075 3.925 20 C -0.154 4.154 21 C -0.088 4.088 22 C -0.158 4.158 23 C -0.065 4.065 24 C -0.157 4.157 25 H 0.058 0.942 26 H 0.020 0.980 27 H 0.026 0.974 28 H 0.261 0.739 29 H 0.006 0.994 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.036 0.964 33 H 0.056 0.944 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.139 0.861 37 H 0.158 0.842 38 H 0.142 0.858 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.281 -6.805 -14.521 16.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.113 3.887 3 H -0.023 1.023 4 C -0.554 4.554 5 H 0.081 0.919 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.785 3.215 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.197 1.197 12 N -0.258 5.258 13 C -0.108 4.108 14 C -0.064 4.064 15 C -0.087 4.087 16 H 0.123 0.877 17 C -0.019 4.019 18 O -0.238 6.238 19 C 0.030 3.970 20 C -0.172 4.172 21 C -0.106 4.106 22 C -0.176 4.176 23 C -0.083 4.083 24 C -0.158 4.158 25 H 0.077 0.923 26 H 0.039 0.961 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.024 0.976 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.135 0.865 35 H 0.119 0.881 36 H 0.157 0.843 37 H 0.176 0.824 38 H 0.160 0.840 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.682 -6.999 -14.497 16.112 hybrid contribution 0.684 0.876 1.288 1.702 sum 0.002 -6.122 -13.209 14.558 Atomic orbital electron populations 1.21619 0.97844 0.98768 0.99031 1.18985 0.92119 0.90065 0.87499 1.02292 1.21393 1.31015 1.12274 0.90744 0.91943 1.25737 0.95384 0.95753 1.02007 1.70025 1.37868 1.24344 1.24072 0.85582 0.78769 0.78661 0.78439 1.19503 1.21168 1.19675 1.61973 1.10169 1.52197 1.01480 1.22232 0.87654 0.99019 1.01859 1.22082 1.00008 0.94214 0.90073 1.21425 0.99400 0.93626 0.94276 0.87662 1.24042 0.78853 1.02648 0.96374 1.86823 1.28040 1.35751 1.73161 1.19968 0.96728 0.86977 0.93291 1.20511 0.97962 0.94686 1.04085 1.21165 0.99161 0.95811 0.94465 1.21351 0.94430 1.01196 1.00586 1.20517 0.98571 0.92795 0.96456 1.20708 0.98505 0.97576 0.99031 0.92280 0.96097 0.95471 0.93002 0.97574 0.92232 0.90415 0.94639 0.92554 0.86490 0.88055 0.84296 0.82423 0.83980 0.86342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.88 8.80 71.98 0.63 -5.25 16 2 C 0.22 11.36 2.06 44.17 0.09 11.45 16 3 H -0.04 -2.34 8.14 -2.39 -0.02 -2.35 16 4 C -0.52 -28.35 7.95 25.60 0.20 -28.14 16 5 H 0.06 3.36 6.40 -2.91 -0.02 3.34 16 6 C 0.01 0.53 5.30 84.65 0.45 0.98 16 7 N -0.92 -53.91 11.32 21.45 0.24 -53.66 16 8 Si 0.96 43.73 29.54 68.60 2.03 45.76 16 9 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 10 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 12 N -0.53 -22.41 4.49 -901.50 -4.05 -26.45 16 13 C 0.04 1.51 9.04 127.69 1.15 2.67 16 14 C 0.06 2.32 4.24 86.30 0.37 2.69 16 15 C -0.07 -1.98 3.18 -10.66 -0.03 -2.02 16 16 H 0.11 2.74 6.64 -2.39 -0.02 2.73 16 17 C 0.06 1.33 7.54 72.56 0.55 1.87 16 18 O -0.32 -9.69 11.13 -97.94 -1.09 -10.78 16 19 C 0.07 2.31 7.04 22.68 0.16 2.47 16 20 C -0.15 -4.08 10.06 22.45 0.23 -3.85 16 21 C -0.09 -2.09 10.02 22.21 0.22 -1.87 16 22 C -0.16 -4.18 10.07 22.31 0.22 -3.96 16 23 C -0.07 -2.05 10.03 22.18 0.22 -1.83 16 24 C -0.16 -5.00 5.54 -19.53 -0.11 -5.11 16 25 H 0.06 3.32 6.07 -2.39 -0.01 3.31 16 26 H 0.02 0.97 6.06 -2.38 -0.01 0.96 16 27 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 29 H 0.01 0.22 8.14 -2.38 -0.02 0.20 16 30 H 0.06 2.39 6.33 -2.39 -0.02 2.37 16 31 H 0.08 2.31 6.57 -2.39 -0.02 2.29 16 32 H 0.04 1.21 7.98 -2.39 -0.02 1.19 16 33 H 0.06 2.28 5.53 -2.39 -0.01 2.27 16 34 H 0.12 2.40 7.90 -2.38 -0.02 2.38 16 35 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 37 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 38 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 39 H 0.12 3.90 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -64.01 311.26 2.52 -61.49 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 1.03 Total: 13.54 kcal Atomic # 6 Polarization: -34.24 SS G_CDS: 4.36 Total: -29.88 kcal Atomic # 7 Polarization: -76.31 SS G_CDS: -3.81 Total: -80.12 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -1.09 Total: -10.78 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -64.01 2.52 -61.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092301660.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.973 kcal (2) G-P(sol) polarization free energy of solvation -64.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds