Wall clock time and date at job start Mon Mar 30 2020 06:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46896 * 110.99810 * 176.05144 * 12 2 1 14 14 C 1.46898 * 110.99849 * 300.00319 * 12 2 1 15 15 C 1.53002 * 109.47202 * 170.00325 * 14 12 2 16 16 H 1.09005 * 110.83605 * 54.29304 * 15 14 12 17 17 C 1.54715 * 110.93869 * 290.57655 * 15 14 12 18 18 O 1.43759 * 102.79566 * 216.48570 * 17 15 14 19 19 C 1.36126 * 109.28697 * 27.55071 * 18 17 15 20 20 C 1.39290 * 129.87862 * 161.45820 * 19 18 17 21 21 C 1.37938 * 120.24467 * 179.59092 * 20 19 18 22 22 C 1.38284 * 120.35134 * 359.97139 * 21 20 19 23 23 C 1.38353 * 119.76531 * 0.20120 * 22 21 20 24 24 C 1.37688 * 119.99728 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 27 27 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.47680 * 59.99996 * 13 12 2 30 30 H 1.09002 * 109.47001 * 180.02562 * 13 12 2 31 31 H 1.09001 * 109.47142 * 300.00084 * 13 12 2 32 32 H 1.09005 * 109.47272 * 289.99844 * 14 12 2 33 33 H 1.08997 * 109.47709 * 50.00013 * 14 12 2 34 34 H 1.08995 * 110.74713 * 334.81268 * 17 15 14 35 35 H 1.09003 * 110.74601 * 97.97699 * 17 15 14 36 36 H 1.08003 * 119.87906 * 359.56393 * 20 19 18 37 37 H 1.07994 * 119.82415 * 179.97438 * 21 20 19 38 38 H 1.07995 * 120.11876 * 180.17215 * 22 21 20 39 39 H 1.07997 * 120.01190 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0197 -0.6924 1.1995 13 6 3.4850 -0.7943 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8626 -0.9041 3.6342 16 1 2.9218 -1.1603 3.6637 17 6 0.9852 -2.1784 3.6366 18 8 0.7149 -2.3762 5.0347 19 6 0.7562 -1.1755 5.6748 20 6 0.2384 -0.8059 6.9140 21 6 0.4046 0.4816 7.3803 22 6 1.0866 1.4164 6.6233 23 6 1.6009 1.0583 5.3898 24 6 1.4332 -0.2252 4.9204 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.7088 1.1611 -3.4845 29 1 3.9186 0.2053 1.1592 30 1 3.8209 -1.3114 2.0860 31 1 3.8030 -1.3529 0.3068 32 1 2.0518 0.9348 2.5280 33 1 0.4722 0.1325 2.3564 34 1 0.0605 -2.0115 3.0844 35 1 1.5330 -3.0251 3.2228 36 1 -0.2956 -1.5299 7.5116 37 1 0.0000 0.7609 8.3419 38 1 1.2169 2.4226 6.9933 39 1 2.1338 1.7854 4.7950 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092301662.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:39 Heat of formation + Delta-G solvation = 2.752287 kcal Electronic energy + Delta-G solvation = -19690.488578 eV Core-core repulsion = 16791.671777 eV Total energy + Delta-G solvation = -2898.816801 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.05443 -37.42147 -37.06414 -33.57777 -32.13453 -30.05976 -29.48920 -28.89157 -26.57714 -24.65193 -23.72107 -22.87847 -21.97342 -20.42416 -19.21055 -17.34429 -16.52660 -16.32146 -15.78459 -15.40243 -15.17286 -14.34807 -13.98247 -13.87654 -13.52818 -13.19529 -12.95908 -12.77051 -12.43568 -12.30926 -11.86273 -11.61823 -11.19584 -11.05540 -10.85404 -10.80645 -10.79503 -10.58946 -10.38202 -10.13674 -10.08420 -9.85651 -8.91075 -8.83289 -8.45497 -8.04812 -7.25447 -6.04096 -4.08835 1.32745 1.41395 3.28381 3.35402 3.39031 3.42705 3.77413 4.35933 4.52457 4.72605 4.92503 5.03766 5.13776 5.25682 5.28884 5.32943 5.42069 5.59326 5.75158 5.82271 5.89357 6.03321 6.12809 6.21216 6.31521 6.37329 6.38992 6.48689 6.52790 6.66417 6.72787 6.81467 7.00771 7.10750 7.28976 7.47143 7.67000 7.79481 8.14536 8.27630 8.54393 8.97381 9.56422 11.02763 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.038814 B = 0.004438 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.223911 B = 6307.218937 C = 6499.630654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.213 3.787 3 H -0.002 1.002 4 C -0.504 4.504 5 H 0.064 0.936 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.273 1.273 11 H -0.287 1.287 12 N -0.538 5.538 13 C 0.035 3.965 14 C 0.063 3.937 15 C -0.073 4.073 16 H 0.095 0.905 17 C 0.068 3.932 18 O -0.312 6.312 19 C 0.109 3.891 20 C -0.146 4.146 21 C -0.090 4.090 22 C -0.154 4.154 23 C -0.068 4.068 24 C -0.161 4.161 25 H 0.034 0.966 26 H 0.008 0.992 27 H 0.085 0.915 28 H 0.260 0.740 29 H 0.012 0.988 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.027 0.973 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.277 -0.697 16.011 16.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.107 3.893 3 H 0.016 0.984 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.198 1.198 11 H -0.213 1.213 12 N -0.262 5.262 13 C -0.114 4.114 14 C -0.065 4.065 15 C -0.092 4.092 16 H 0.113 0.887 17 C -0.006 4.006 18 O -0.226 6.226 19 C 0.064 3.936 20 C -0.164 4.164 21 C -0.109 4.109 22 C -0.172 4.172 23 C -0.086 4.086 24 C -0.163 4.163 25 H 0.054 0.946 26 H 0.027 0.973 27 H 0.104 0.896 28 H 0.070 0.930 29 H 0.030 0.970 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.045 0.955 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.127 0.873 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.050 -1.292 15.904 15.956 hybrid contribution 0.713 0.568 -1.055 1.394 sum 0.663 -0.724 14.849 14.881 Atomic orbital electron populations 1.21867 0.97749 0.99655 0.99920 1.19243 0.92291 0.91998 0.85778 0.98437 1.21143 1.31080 1.12329 0.89711 0.91822 1.24936 0.95164 0.95081 0.99047 1.69892 1.36828 1.23071 1.23444 0.86524 0.78446 0.80078 0.82520 1.20815 1.19825 1.21260 1.62155 1.09290 1.52670 1.02120 1.22257 0.88853 0.99216 1.01064 1.22053 1.01275 0.93969 0.89217 1.21480 1.00881 0.94821 0.92013 0.88712 1.23860 0.99879 0.98462 0.78405 1.86789 1.87257 1.26372 1.22199 1.19656 0.94775 0.85189 0.94007 1.20223 1.04052 0.97093 0.95076 1.20807 0.98288 0.92249 0.99508 1.20995 1.01389 0.99772 0.95051 1.20344 0.98382 0.94395 0.95483 1.20896 1.02258 0.95180 0.97925 0.94641 0.97341 0.89601 0.92968 0.96951 0.93848 0.90481 0.95480 0.90298 0.89894 0.87297 0.85770 0.85524 0.85764 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.76 37.16 0.33 -2.88 16 2 C 0.21 5.25 2.06 -68.87 -0.14 5.10 16 3 H 0.00 -0.05 8.14 -51.92 -0.42 -0.48 16 4 C -0.50 -13.48 7.93 -34.44 -0.27 -13.75 16 5 H 0.06 1.69 6.39 -52.49 -0.34 1.35 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.17 11.32 55.43 0.63 -24.55 16 8 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 12 N -0.54 -11.04 4.51 -236.29 -1.06 -12.11 16 13 C 0.03 0.65 9.06 60.06 0.54 1.20 16 14 C 0.06 1.13 4.12 -3.82 -0.02 1.11 16 15 C -0.07 -1.12 3.04 -90.40 -0.27 -1.40 16 16 H 0.09 1.42 6.34 -51.93 -0.33 1.09 16 17 C 0.07 1.03 7.44 38.06 0.28 1.31 16 18 O -0.31 -4.87 11.10 -20.14 -0.22 -5.10 16 19 C 0.11 1.62 7.04 -38.93 -0.27 1.35 16 20 C -0.15 -1.82 10.06 -39.30 -0.40 -2.21 16 21 C -0.09 -0.97 10.02 -39.67 -0.40 -1.37 16 22 C -0.15 -1.72 10.07 -39.52 -0.40 -2.12 16 23 C -0.07 -0.89 9.92 -39.74 -0.39 -1.28 16 24 C -0.16 -2.37 5.69 -104.09 -0.59 -2.96 16 25 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.01 0.17 6.20 -51.93 -0.32 -0.15 16 27 H 0.09 2.27 6.07 -51.93 -0.32 1.95 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.04 0.69 6.23 -51.93 -0.32 0.37 16 31 H 0.08 1.55 6.23 -51.93 -0.32 1.23 16 32 H 0.03 0.49 8.12 -51.93 -0.42 0.06 16 33 H 0.08 1.47 5.71 -51.93 -0.30 1.17 16 34 H 0.08 1.29 7.83 -51.93 -0.41 0.89 16 35 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 37 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 38 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 310.53 15.07 4.68 4.68 Total: -1.00 -28.55 310.53 -8.69 -37.24 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.59 Total: 0.23 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -2.10 Total: -16.41 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: -0.44 Total: -36.65 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -0.22 Total: -5.10 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.55 -8.69 -37.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092301662.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.990 kcal (2) G-P(sol) polarization free energy of solvation -28.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds