Wall clock time and date at job start Mon Mar 30 2020 06:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46896 * 110.99810 * 176.05144 * 12 2 1 14 14 C 1.46898 * 110.99849 * 300.00319 * 12 2 1 15 15 C 1.53002 * 109.47202 * 170.00325 * 14 12 2 16 16 H 1.09005 * 110.83605 * 54.29304 * 15 14 12 17 17 C 1.54715 * 110.93869 * 290.57655 * 15 14 12 18 18 O 1.43759 * 102.79566 * 216.48570 * 17 15 14 19 19 C 1.36126 * 109.28697 * 27.55071 * 18 17 15 20 20 C 1.39290 * 129.87862 * 161.45820 * 19 18 17 21 21 C 1.37938 * 120.24467 * 179.59092 * 20 19 18 22 22 C 1.38284 * 120.35134 * 359.97139 * 21 20 19 23 23 C 1.38353 * 119.76531 * 0.20120 * 22 21 20 24 24 C 1.37688 * 119.99728 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 27 27 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.47680 * 59.99996 * 13 12 2 30 30 H 1.09002 * 109.47001 * 180.02562 * 13 12 2 31 31 H 1.09001 * 109.47142 * 300.00084 * 13 12 2 32 32 H 1.09005 * 109.47272 * 289.99844 * 14 12 2 33 33 H 1.08997 * 109.47709 * 50.00013 * 14 12 2 34 34 H 1.08995 * 110.74713 * 334.81268 * 17 15 14 35 35 H 1.09003 * 110.74601 * 97.97699 * 17 15 14 36 36 H 1.08003 * 119.87906 * 359.56393 * 20 19 18 37 37 H 1.07994 * 119.82415 * 179.97438 * 21 20 19 38 38 H 1.07995 * 120.11876 * 180.17215 * 22 21 20 39 39 H 1.07997 * 120.01190 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0197 -0.6924 1.1995 13 6 3.4850 -0.7943 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8626 -0.9041 3.6342 16 1 2.9218 -1.1603 3.6637 17 6 0.9852 -2.1784 3.6366 18 8 0.7149 -2.3762 5.0347 19 6 0.7562 -1.1755 5.6748 20 6 0.2384 -0.8059 6.9140 21 6 0.4046 0.4816 7.3803 22 6 1.0866 1.4164 6.6233 23 6 1.6009 1.0583 5.3898 24 6 1.4332 -0.2252 4.9204 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.7088 1.1611 -3.4845 29 1 3.9186 0.2053 1.1592 30 1 3.8209 -1.3114 2.0860 31 1 3.8030 -1.3529 0.3068 32 1 2.0518 0.9348 2.5280 33 1 0.4722 0.1325 2.3564 34 1 0.0605 -2.0115 3.0844 35 1 1.5330 -3.0251 3.2228 36 1 -0.2956 -1.5299 7.5116 37 1 0.0000 0.7609 8.3419 38 1 1.2169 2.4226 6.9933 39 1 2.1338 1.7854 4.7950 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092301662.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:39 Heat of formation + Delta-G solvation = -13.732841 kcal Electronic energy + Delta-G solvation = -19691.203427 eV Core-core repulsion = 16791.671777 eV Total energy + Delta-G solvation = -2899.531650 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.14738 -38.88686 -38.24799 -35.28070 -33.67918 -31.26489 -30.90261 -30.22441 -28.19776 -26.50602 -25.20849 -24.01658 -23.02871 -21.87166 -20.81835 -18.45827 -18.35836 -17.53761 -17.01757 -16.89687 -16.42716 -15.99347 -15.46742 -15.10621 -15.06964 -14.51856 -14.28802 -13.98933 -13.81843 -13.69128 -13.45189 -12.96082 -12.84259 -12.68230 -12.47571 -12.33667 -12.19531 -12.07060 -11.96060 -11.85259 -11.67133 -11.49567 -10.86532 -10.51684 -9.82331 -9.09266 -8.97305 -8.11328 -6.22975 0.36222 0.44113 1.42552 1.44097 1.54332 2.37053 2.42313 2.79477 3.14631 3.21026 3.62224 3.68196 3.91936 4.00133 4.22786 4.25558 4.43297 4.51078 4.57505 4.59976 4.62137 4.71419 4.77989 4.81360 4.89177 4.98923 5.04486 5.09330 5.13515 5.28014 5.41990 5.49020 5.51966 5.57840 5.71279 5.72965 5.77550 6.24108 6.26056 6.36068 6.69115 6.91495 7.46360 8.94864 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.038814 B = 0.004438 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.223911 B = 6307.218937 C = 6499.630654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.217 3.783 3 H -0.038 1.038 4 C -0.518 4.518 5 H 0.063 0.937 6 C 0.011 3.989 7 N -0.922 5.922 8 Si 0.960 3.040 9 H -0.277 1.277 10 H -0.267 1.267 11 H -0.285 1.285 12 N -0.539 5.539 13 C 0.038 3.962 14 C 0.072 3.928 15 C -0.064 4.064 16 H 0.099 0.901 17 C 0.070 3.930 18 O -0.323 6.323 19 C 0.080 3.920 20 C -0.150 4.150 21 C -0.083 4.083 22 C -0.149 4.149 23 C -0.082 4.082 24 C -0.181 4.181 25 H 0.033 0.967 26 H 0.027 0.973 27 H 0.059 0.941 28 H 0.261 0.739 29 H 0.005 0.995 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.024 0.976 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.118 0.882 36 H 0.141 0.859 37 H 0.164 0.836 38 H 0.154 0.846 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.518 -0.875 17.749 17.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.110 3.890 3 H -0.021 1.021 4 C -0.556 4.556 5 H 0.081 0.919 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.203 1.203 10 H -0.192 1.192 11 H -0.211 1.211 12 N -0.263 5.263 13 C -0.111 4.111 14 C -0.056 4.056 15 C -0.083 4.083 16 H 0.116 0.884 17 C -0.004 4.004 18 O -0.238 6.238 19 C 0.035 3.965 20 C -0.168 4.168 21 C -0.101 4.101 22 C -0.167 4.167 23 C -0.100 4.100 24 C -0.182 4.182 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.024 0.976 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.042 0.958 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.136 0.864 36 H 0.159 0.841 37 H 0.181 0.819 38 H 0.171 0.829 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.199 -1.474 17.664 17.727 hybrid contribution 0.622 0.697 -1.466 1.738 sum 0.820 -0.778 16.198 16.237 Atomic orbital electron populations 1.21676 0.97423 0.99322 0.99555 1.19037 0.92541 0.90163 0.87248 1.02102 1.21435 1.31051 1.12346 0.90771 0.91917 1.25714 0.95354 0.95755 1.01940 1.70025 1.37795 1.24308 1.24019 0.85529 0.77897 0.79150 0.78888 1.20292 1.19175 1.21071 1.62080 1.10342 1.52169 1.01727 1.22257 0.87749 0.99013 1.02044 1.21983 1.00348 0.94315 0.88988 1.21317 1.01091 0.94581 0.91268 0.88361 1.23807 0.99394 0.98649 0.78592 1.86759 1.87727 1.27161 1.22132 1.19997 0.96286 0.84967 0.95237 1.20610 1.03581 0.98334 0.94321 1.21267 0.96997 0.91192 1.00614 1.21399 0.99984 1.01248 0.94027 1.20584 0.98897 0.93905 0.96605 1.20914 1.03529 0.96093 0.97663 0.94775 0.95441 0.92189 0.92991 0.97603 0.90544 0.91894 0.95773 0.91381 0.90987 0.86445 0.84116 0.81883 0.82856 0.85519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.95 8.76 71.98 0.63 -5.32 16 2 C 0.22 10.95 2.06 44.17 0.09 11.04 16 3 H -0.04 -2.19 8.14 -2.38 -0.02 -2.21 16 4 C -0.52 -28.05 7.93 25.60 0.20 -27.84 16 5 H 0.06 3.34 6.39 -2.91 -0.02 3.33 16 6 C 0.01 0.60 5.30 84.66 0.45 1.05 16 7 N -0.92 -52.92 11.32 21.45 0.24 -52.67 16 8 Si 0.96 43.30 29.54 68.60 2.03 45.32 16 9 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 N -0.54 -22.25 4.51 -901.47 -4.06 -26.32 16 13 C 0.04 1.41 9.06 127.69 1.16 2.57 16 14 C 0.07 2.56 4.12 86.30 0.36 2.91 16 15 C -0.06 -1.93 3.04 -10.65 -0.03 -1.96 16 16 H 0.10 2.84 6.34 -2.38 -0.02 2.83 16 17 C 0.07 2.08 7.44 72.57 0.54 2.62 16 18 O -0.32 -9.92 11.10 -94.98 -1.05 -10.98 16 19 C 0.08 2.29 7.04 22.69 0.16 2.45 16 20 C -0.15 -3.38 10.06 22.45 0.23 -3.16 16 21 C -0.08 -1.49 10.02 22.21 0.22 -1.27 16 22 C -0.15 -2.86 10.07 22.31 0.22 -2.63 16 23 C -0.08 -2.00 9.92 22.17 0.22 -1.78 16 24 C -0.18 -5.15 5.69 -19.52 -0.11 -5.26 16 25 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.03 1.19 6.20 -2.39 -0.01 1.17 16 27 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 28 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 29 H 0.01 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.08 2.34 6.23 -2.39 -0.01 2.33 16 31 H 0.06 2.53 6.23 -2.39 -0.01 2.51 16 32 H 0.02 0.87 8.12 -2.38 -0.02 0.85 16 33 H 0.07 2.55 5.71 -2.39 -0.01 2.54 16 34 H 0.07 2.27 7.83 -2.39 -0.02 2.25 16 35 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 36 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 37 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 38 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 39 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -61.75 310.53 2.52 -59.23 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 1.03 Total: 12.00 kcal Atomic # 6 Polarization: -30.92 SS G_CDS: 4.34 Total: -26.59 kcal Atomic # 7 Polarization: -75.17 SS G_CDS: -3.82 Total: -78.99 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -1.05 Total: -10.98 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -61.75 2.52 -59.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092301662.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.495 kcal (2) G-P(sol) polarization free energy of solvation -61.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds