Wall clock time and date at job start Mon Mar 30 2020 06:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35900 * 116.99769 * 2 1 4 4 C 1.38757 * 120.17577 * 0.02562 * 3 2 1 5 5 C 1.37838 * 119.71358 * 179.87094 * 4 3 2 6 6 C 1.38960 * 120.62639 * 359.97438 * 5 4 3 7 7 C 1.37707 * 119.76404 * 0.18107 * 6 5 4 8 8 C 1.38428 * 120.17395 * 179.97438 * 3 2 1 9 9 C 1.50650 * 122.56700 * 179.68838 * 7 6 5 10 10 H 1.08998 * 109.22268 * 257.28200 * 9 7 6 11 11 N 1.46903 * 109.25241 * 137.83235 * 9 7 6 12 12 C 1.46895 * 110.99876 * 152.82846 * 11 9 7 13 13 C 1.50696 * 109.47041 * 185.19608 * 12 11 9 14 14 H 1.07996 * 120.00469 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99798 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00318 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 120.00033 * 179.97438 * 15 13 12 18 18 H 1.48491 * 109.46951 * 89.99678 * 17 15 13 19 19 H 1.48493 * 109.47314 * 210.00093 * 17 15 13 20 20 H 1.48504 * 109.46832 * 329.99990 * 17 15 13 21 21 C 1.52729 * 110.59167 * 17.54678 * 9 7 6 22 22 C 1.53333 * 108.36499 * 308.92435 * 21 9 7 23 23 C 1.50658 * 117.69104 * 180.23929 * 6 5 4 24 24 H 1.08996 * 109.47217 * 59.99319 * 1 2 3 25 25 H 1.09004 * 109.46695 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46653 * 299.99546 * 1 2 3 27 27 H 1.08000 * 120.14637 * 359.84378 * 4 3 2 28 28 H 1.08000 * 119.68434 * 180.02562 * 5 4 3 29 29 H 1.07993 * 119.74400 * 0.03743 * 8 3 2 30 30 H 1.00900 * 110.99913 * 276.78797 * 11 9 7 31 31 H 1.08994 * 109.47361 * 305.19603 * 12 11 9 32 32 H 1.09001 * 109.46762 * 65.19528 * 12 11 9 33 33 H 0.96995 * 120.00224 * 179.97438 * 16 15 13 34 34 H 1.09008 * 109.68488 * 68.63671 * 21 9 7 35 35 H 1.08997 * 109.68829 * 189.20228 * 21 9 7 36 36 H 1.09005 * 109.68328 * 189.66527 * 22 21 9 37 37 H 1.08995 * 109.68469 * 310.18351 * 22 21 9 38 38 H 1.08999 * 109.24905 * 77.20179 * 23 6 5 39 39 H 1.08999 * 109.25149 * 317.78245 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2937 2.3769 0.0005 5 6 1.9293 3.6000 0.0032 6 6 3.3168 3.6767 0.0059 7 6 4.0654 2.5209 0.0022 8 6 3.4281 1.2876 0.0005 9 6 5.5719 2.5305 -0.0021 10 1 5.9293 2.3076 -1.0074 11 7 6.0655 1.5044 0.9261 12 6 7.3928 1.0228 0.5210 13 6 7.8100 -0.1140 1.4180 14 1 7.1549 -0.4453 2.2101 15 6 9.0286 -0.7304 1.2281 16 7 9.8267 -0.3266 0.2639 17 14 9.5462 -2.1391 2.3405 18 1 9.0851 -3.4248 1.7581 19 1 11.0259 -2.1541 2.4643 20 1 8.9390 -1.9580 3.6836 21 6 6.1016 3.8965 0.4294 22 6 5.4064 4.9724 -0.4133 23 6 3.9422 5.0474 0.0144 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 0.2149 2.3264 -0.0016 28 1 1.3434 4.5072 0.0041 29 1 4.0150 0.3811 0.0003 30 1 6.0801 1.8508 1.8736 31 1 7.3538 0.6755 -0.5114 32 1 8.1149 1.8351 0.6040 33 1 10.6841 -0.7600 0.1305 34 1 5.8827 4.0585 1.4849 35 1 7.1784 3.9411 0.2661 36 1 5.8872 5.9365 -0.2471 37 1 5.4681 4.7086 -1.4691 38 1 3.8823 5.4635 1.0200 39 1 3.3991 5.6944 -0.6745 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092383462.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:19 Heat of formation + Delta-G solvation = -26.539999 kcal Electronic energy + Delta-G solvation = -19412.051906 eV Core-core repulsion = 16511.964896 eV Total energy + Delta-G solvation = -2900.087010 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.22066 -38.51892 -35.79814 -34.18556 -32.56774 -30.79371 -29.47419 -28.48467 -26.80130 -25.63660 -23.12795 -22.18511 -21.89323 -21.00527 -19.29517 -17.58601 -16.33669 -16.07679 -15.62309 -15.43210 -14.85219 -14.51360 -14.43414 -13.66433 -13.60438 -13.25815 -13.18181 -12.62892 -12.42594 -12.24830 -12.10070 -11.87049 -11.63802 -11.31367 -10.99680 -10.78629 -10.74571 -10.67741 -10.51637 -10.37695 -10.15307 -9.76819 -9.18834 -8.47086 -8.42351 -7.78073 -7.26438 -6.00233 -4.01691 1.61955 1.69898 3.34997 3.40617 3.44686 3.44744 3.99885 4.46108 4.83252 4.91765 5.00193 5.10050 5.13113 5.16531 5.23351 5.32858 5.35739 5.40197 5.44243 5.64783 5.77379 5.78449 5.89190 5.94065 6.07053 6.14561 6.20887 6.36549 6.41637 6.56008 6.65636 6.70087 6.95169 7.09857 7.30484 7.42994 7.66332 7.82574 8.15203 8.42292 8.61879 9.07552 9.63145 11.10636 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.017994 B = 0.005483 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.695999 B = 5105.031081 C = 6453.296807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.317 6.317 3 C 0.110 3.890 4 C -0.212 4.212 5 C -0.094 4.094 6 C -0.116 4.116 7 C -0.020 4.020 8 C -0.114 4.114 9 C 0.122 3.878 10 H 0.085 0.915 11 N -0.680 5.680 12 C 0.195 3.805 13 C -0.511 4.511 14 H 0.062 0.938 15 C 0.056 3.944 16 N -0.899 5.899 17 Si 0.898 3.102 18 H -0.280 1.280 19 H -0.288 1.288 20 H -0.274 1.274 21 C -0.145 4.145 22 C -0.116 4.116 23 C -0.072 4.072 24 H 0.050 0.950 25 H 0.095 0.905 26 H 0.051 0.949 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.144 0.856 30 H 0.331 0.669 31 H 0.027 0.973 32 H -0.012 1.012 33 H 0.261 0.739 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.444 9.174 -1.557 18.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.230 6.230 3 C 0.066 3.934 4 C -0.231 4.231 5 C -0.112 4.112 6 C -0.117 4.117 7 C -0.021 4.021 8 C -0.133 4.133 9 C 0.012 3.988 10 H 0.103 0.897 11 N -0.309 5.309 12 C 0.068 3.932 13 C -0.550 4.550 14 H 0.081 0.919 15 C -0.146 4.146 16 N -0.539 5.539 17 Si 0.726 3.274 18 H -0.206 1.206 19 H -0.214 1.214 20 H -0.199 1.199 21 C -0.184 4.184 22 C -0.154 4.154 23 C -0.109 4.109 24 H 0.069 0.931 25 H 0.114 0.886 26 H 0.070 0.930 27 H 0.138 0.862 28 H 0.134 0.866 29 H 0.162 0.838 30 H 0.148 0.852 31 H 0.045 0.955 32 H 0.006 0.994 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.498 8.396 -1.946 18.613 hybrid contribution 0.575 0.082 0.785 0.977 sum -15.922 8.478 -1.161 18.076 Atomic orbital electron populations 1.22968 0.79229 1.03462 1.00867 1.86108 1.20637 1.27225 1.89076 1.19009 0.92573 0.83795 0.98031 1.21038 0.99352 0.92561 1.10131 1.20776 0.93804 0.96676 0.99945 1.19542 0.92994 0.94752 1.04383 1.19568 0.95549 0.91047 0.95973 1.20611 0.90491 0.99663 1.02532 1.20361 0.89501 0.90393 0.98573 0.89736 1.60700 1.30659 1.35238 1.04322 1.19599 0.82434 0.94245 0.96882 1.21184 1.01843 1.16263 1.15663 0.91936 1.24978 0.96464 0.97461 0.95648 1.69959 1.10499 1.41943 1.31470 0.86496 0.77395 0.82521 0.80976 1.20639 1.21371 1.19872 1.22288 1.00575 0.95666 0.99897 1.21511 0.94794 0.98909 1.00220 1.20364 0.95756 0.93386 1.01352 0.93096 0.88623 0.93039 0.86208 0.86564 0.83811 0.85152 0.95463 0.99400 0.92970 0.91759 0.91205 0.91914 0.91706 0.91275 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.82 101.05 0.99 1.29 16 2 O -0.32 -4.81 10.50 -19.43 -0.20 -5.02 16 3 C 0.11 1.76 6.68 -39.32 -0.26 1.49 16 4 C -0.21 -2.84 9.04 -39.54 -0.36 -3.20 16 5 C -0.09 -1.22 9.60 -39.46 -0.38 -1.60 16 6 C -0.12 -1.67 5.74 -104.57 -0.60 -2.27 16 7 C -0.02 -0.34 5.55 -104.62 -0.58 -0.92 16 8 C -0.11 -2.04 9.15 -39.29 -0.36 -2.40 16 9 C 0.12 2.20 2.47 -69.03 -0.17 2.03 16 10 H 0.08 1.62 7.68 -51.93 -0.40 1.22 16 11 N -0.68 -14.52 5.30 -109.40 -0.58 -15.10 16 12 C 0.19 5.04 5.26 -4.98 -0.03 5.02 16 13 C -0.51 -14.51 9.36 -34.44 -0.32 -14.83 16 14 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 17 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 C -0.15 -2.25 5.26 -26.70 -0.14 -2.39 16 22 C -0.12 -1.47 5.98 -26.70 -0.16 -1.63 16 23 C -0.07 -0.85 5.67 -28.05 -0.16 -1.01 16 24 H 0.05 0.44 7.67 -51.93 -0.40 0.04 16 25 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.45 7.67 -51.93 -0.40 0.06 16 27 H 0.12 1.28 6.33 -52.49 -0.33 0.95 16 28 H 0.12 1.20 8.05 -52.49 -0.42 0.77 16 29 H 0.14 2.88 7.61 -52.49 -0.40 2.48 16 30 H 0.33 6.88 8.38 -39.29 -0.33 6.55 16 31 H 0.03 0.76 7.92 -51.93 -0.41 0.35 16 32 H -0.01 -0.32 7.86 -51.93 -0.41 -0.73 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.06 0.98 7.91 -51.92 -0.41 0.57 16 35 H 0.07 1.16 7.88 -51.93 -0.41 0.75 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 LS Contribution 316.71 15.07 4.77 4.77 Total: -1.00 -30.70 316.71 -8.89 -39.59 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -5.97 Total: 3.94 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -2.62 Total: -18.92 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.16 Total: -41.27 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: -0.20 Total: -5.02 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.70 -8.89 -39.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092383462.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.051 kcal (2) G-P(sol) polarization free energy of solvation -30.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds