Wall clock time and date at job start Mon Mar 30 2020 06:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35900 * 116.99769 * 2 1 4 4 C 1.38757 * 120.17577 * 0.02562 * 3 2 1 5 5 C 1.37838 * 119.71358 * 179.87094 * 4 3 2 6 6 C 1.38960 * 120.62639 * 359.97438 * 5 4 3 7 7 C 1.37707 * 119.76404 * 0.18107 * 6 5 4 8 8 C 1.38428 * 120.17395 * 179.97438 * 3 2 1 9 9 C 1.50650 * 122.56700 * 179.68838 * 7 6 5 10 10 H 1.08998 * 109.22268 * 257.28200 * 9 7 6 11 11 N 1.46903 * 109.25241 * 137.83235 * 9 7 6 12 12 C 1.46895 * 110.99876 * 152.82846 * 11 9 7 13 13 C 1.50696 * 109.47041 * 185.19608 * 12 11 9 14 14 H 1.07996 * 120.00469 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99798 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00318 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 120.00033 * 179.97438 * 15 13 12 18 18 H 1.48491 * 109.46951 * 89.99678 * 17 15 13 19 19 H 1.48493 * 109.47314 * 210.00093 * 17 15 13 20 20 H 1.48504 * 109.46832 * 329.99990 * 17 15 13 21 21 C 1.52729 * 110.59167 * 17.54678 * 9 7 6 22 22 C 1.53333 * 108.36499 * 308.92435 * 21 9 7 23 23 C 1.50658 * 117.69104 * 180.23929 * 6 5 4 24 24 H 1.08996 * 109.47217 * 59.99319 * 1 2 3 25 25 H 1.09004 * 109.46695 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46653 * 299.99546 * 1 2 3 27 27 H 1.08000 * 120.14637 * 359.84378 * 4 3 2 28 28 H 1.08000 * 119.68434 * 180.02562 * 5 4 3 29 29 H 1.07993 * 119.74400 * 0.03743 * 8 3 2 30 30 H 1.00900 * 110.99913 * 276.78797 * 11 9 7 31 31 H 1.08994 * 109.47361 * 305.19603 * 12 11 9 32 32 H 1.09001 * 109.46762 * 65.19528 * 12 11 9 33 33 H 0.96995 * 120.00224 * 179.97438 * 16 15 13 34 34 H 1.09008 * 109.68488 * 68.63671 * 21 9 7 35 35 H 1.08997 * 109.68829 * 189.20228 * 21 9 7 36 36 H 1.09005 * 109.68328 * 189.66527 * 22 21 9 37 37 H 1.08995 * 109.68469 * 310.18351 * 22 21 9 38 38 H 1.08999 * 109.24905 * 77.20179 * 23 6 5 39 39 H 1.08999 * 109.25149 * 317.78245 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2937 2.3769 0.0005 5 6 1.9293 3.6000 0.0032 6 6 3.3168 3.6767 0.0059 7 6 4.0654 2.5209 0.0022 8 6 3.4281 1.2876 0.0005 9 6 5.5719 2.5305 -0.0021 10 1 5.9293 2.3076 -1.0074 11 7 6.0655 1.5044 0.9261 12 6 7.3928 1.0228 0.5210 13 6 7.8100 -0.1140 1.4180 14 1 7.1549 -0.4453 2.2101 15 6 9.0286 -0.7304 1.2281 16 7 9.8267 -0.3266 0.2639 17 14 9.5462 -2.1391 2.3405 18 1 9.0851 -3.4248 1.7581 19 1 11.0259 -2.1541 2.4643 20 1 8.9390 -1.9580 3.6836 21 6 6.1016 3.8965 0.4294 22 6 5.4064 4.9724 -0.4133 23 6 3.9422 5.0474 0.0144 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 0.2149 2.3264 -0.0016 28 1 1.3434 4.5072 0.0041 29 1 4.0150 0.3811 0.0003 30 1 6.0801 1.8508 1.8736 31 1 7.3538 0.6755 -0.5114 32 1 8.1149 1.8351 0.6040 33 1 10.6841 -0.7600 0.1305 34 1 5.8827 4.0585 1.4849 35 1 7.1784 3.9411 0.2661 36 1 5.8872 5.9365 -0.2471 37 1 5.4681 4.7086 -1.4691 38 1 3.8823 5.4635 1.0200 39 1 3.3991 5.6944 -0.6745 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092383462.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:19 Heat of formation + Delta-G solvation = -45.746803 kcal Electronic energy + Delta-G solvation = -19412.884776 eV Core-core repulsion = 16511.964896 eV Total energy + Delta-G solvation = -2900.919880 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.37666 -39.68438 -37.23777 -35.61940 -34.48224 -32.24709 -30.60054 -29.83948 -28.08048 -27.20139 -24.53907 -23.63003 -23.27563 -22.49072 -20.43961 -18.93766 -18.24783 -17.24421 -16.84457 -16.59339 -16.47200 -16.00568 -15.73585 -15.31575 -14.78897 -14.50605 -14.34013 -14.14061 -13.75774 -13.60451 -13.49533 -13.34539 -12.92243 -12.71376 -12.68569 -12.55346 -12.15966 -11.96399 -11.91135 -11.59291 -11.51835 -11.42173 -11.10765 -10.65625 -9.67817 -9.06060 -8.89166 -8.22619 -6.33680 0.45007 0.55539 1.39464 1.41672 1.52813 2.39234 2.46973 2.83003 3.10010 3.53344 3.75432 3.93017 4.00844 4.03836 4.17761 4.26746 4.35440 4.42868 4.45345 4.51244 4.71082 4.71462 4.73628 4.77998 4.95789 5.04467 5.07362 5.12211 5.17724 5.19602 5.28985 5.39597 5.48883 5.56268 5.62344 5.81750 5.94560 6.06064 6.46133 6.58937 6.71609 6.87571 7.36975 8.88472 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.017994 B = 0.005483 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.695999 B = 5105.031081 C = 6453.296807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.347 6.347 3 C 0.101 3.899 4 C -0.203 4.203 5 C -0.084 4.084 6 C -0.118 4.118 7 C -0.038 4.038 8 C -0.148 4.148 9 C 0.123 3.877 10 H 0.058 0.942 11 N -0.681 5.681 12 C 0.215 3.785 13 C -0.534 4.534 14 H 0.060 0.940 15 C 0.003 3.997 16 N -0.933 5.933 17 Si 0.972 3.028 18 H -0.275 1.275 19 H -0.279 1.279 20 H -0.264 1.264 21 C -0.139 4.139 22 C -0.111 4.111 23 C -0.068 4.068 24 H 0.067 0.933 25 H 0.113 0.887 26 H 0.066 0.934 27 H 0.154 0.846 28 H 0.158 0.842 29 H 0.103 0.897 30 H 0.335 0.665 31 H -0.006 1.006 32 H -0.033 1.033 33 H 0.265 0.735 34 H 0.069 0.931 35 H 0.049 0.951 36 H 0.087 0.913 37 H 0.059 0.941 38 H 0.085 0.915 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.933 10.818 -0.723 21.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.261 6.261 3 C 0.056 3.944 4 C -0.221 4.221 5 C -0.102 4.102 6 C -0.119 4.119 7 C -0.039 4.039 8 C -0.168 4.168 9 C 0.013 3.987 10 H 0.076 0.924 11 N -0.310 5.310 12 C 0.087 3.913 13 C -0.572 4.572 14 H 0.078 0.922 15 C -0.195 4.195 16 N -0.574 5.574 17 Si 0.796 3.204 18 H -0.200 1.200 19 H -0.204 1.204 20 H -0.189 1.189 21 C -0.179 4.179 22 C -0.149 4.149 23 C -0.105 4.105 24 H 0.086 0.914 25 H 0.131 0.869 26 H 0.085 0.915 27 H 0.172 0.828 28 H 0.176 0.824 29 H 0.121 0.879 30 H 0.152 0.848 31 H 0.013 0.987 32 H -0.015 1.015 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -19.014 10.053 -1.113 21.537 hybrid contribution 1.244 -0.434 0.477 1.401 sum -17.770 9.619 -0.637 20.217 Atomic orbital electron populations 1.23315 0.76484 1.05289 1.02327 1.86069 1.23577 1.27422 1.89078 1.19080 0.91968 0.85157 0.98149 1.21414 1.00934 0.91572 1.08215 1.21239 0.93267 0.98053 0.97622 1.19860 0.93874 0.94876 1.03262 1.19414 0.94258 0.92035 0.98152 1.20437 0.91838 0.98715 1.05761 1.20345 0.91086 0.90907 0.96344 0.92354 1.60555 1.27789 1.37569 1.05087 1.19175 0.84165 0.93209 0.94747 1.21522 1.02362 1.17237 1.16075 0.92150 1.25924 0.96321 1.00186 0.97117 1.70085 1.10960 1.43321 1.33006 0.85349 0.77268 0.78718 0.79055 1.20043 1.20395 1.18854 1.22184 0.99586 0.95241 1.00844 1.21501 0.95659 0.98589 0.99153 1.20440 0.94753 0.92193 1.03066 0.91426 0.86887 0.91548 0.82805 0.82423 0.87873 0.84798 0.98748 1.01531 0.92607 0.91216 0.93200 0.89423 0.92216 0.89677 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.82 113.37 1.11 1.47 16 2 O -0.35 -10.53 10.50 -92.43 -0.97 -11.50 16 3 C 0.10 3.20 6.68 22.44 0.15 3.35 16 4 C -0.20 -4.81 9.04 22.30 0.20 -4.61 16 5 C -0.08 -1.84 9.60 22.35 0.21 -1.63 16 6 C -0.12 -3.13 5.74 -19.83 -0.11 -3.24 16 7 C -0.04 -1.30 5.55 -19.86 -0.11 -1.41 16 8 C -0.15 -5.60 9.15 22.46 0.21 -5.40 16 9 C 0.12 4.73 2.47 44.06 0.11 4.84 16 10 H 0.06 2.49 7.68 -2.39 -0.02 2.47 16 11 N -0.68 -31.28 5.30 -500.04 -2.65 -33.93 16 12 C 0.21 11.96 5.26 85.56 0.45 12.41 16 13 C -0.53 -31.67 9.36 25.60 0.24 -31.43 16 14 H 0.06 3.53 7.81 -2.91 -0.02 3.50 16 15 C 0.00 0.16 5.46 84.65 0.46 0.62 16 16 N -0.93 -57.69 13.29 21.45 0.28 -57.40 16 17 Si 0.97 45.72 29.54 68.60 2.03 47.75 16 18 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 21 C -0.14 -4.42 5.26 30.62 0.16 -4.26 16 22 C -0.11 -2.60 5.98 30.61 0.18 -2.42 16 23 C -0.07 -1.36 5.67 29.74 0.17 -1.19 16 24 H 0.07 0.97 7.67 -2.39 -0.02 0.95 16 25 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 26 H 0.07 0.98 7.67 -2.39 -0.02 0.96 16 27 H 0.15 2.55 6.33 -2.91 -0.02 2.53 16 28 H 0.16 2.21 8.05 -2.91 -0.02 2.19 16 29 H 0.10 4.61 7.61 -2.91 -0.02 4.59 16 30 H 0.33 14.74 8.38 -89.69 -0.75 13.98 16 31 H -0.01 -0.34 7.92 -2.39 -0.02 -0.36 16 32 H -0.03 -1.93 7.86 -2.39 -0.02 -1.95 16 33 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 34 H 0.07 2.12 7.91 -2.38 -0.02 2.10 16 35 H 0.05 1.74 7.88 -2.39 -0.02 1.73 16 36 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 37 H 0.06 1.47 8.10 -2.39 -0.02 1.45 16 38 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.10 1.45 8.12 -2.39 -0.02 1.43 16 Total: -1.00 -70.69 316.71 2.41 -68.28 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.28 Total: 19.72 kcal Atomic # 6 Polarization: -36.35 SS G_CDS: 3.43 Total: -32.91 kcal Atomic # 7 Polarization: -88.96 SS G_CDS: -2.37 Total: -91.33 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -0.97 Total: -11.50 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -70.69 2.41 -68.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092383462.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.533 kcal (2) G-P(sol) polarization free energy of solvation -70.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds