Wall clock time and date at job start Mon Mar 30 2020 06:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35899 * 116.99578 * 2 1 4 4 C 1.38766 * 120.17924 * 359.97438 * 3 2 1 5 5 C 1.37826 * 119.71326 * 180.08631 * 4 3 2 6 6 C 1.38953 * 120.63272 * 0.02562 * 5 4 3 7 7 C 1.37711 * 119.76080 * 359.82169 * 6 5 4 8 8 C 1.38432 * 120.17333 * 179.97438 * 3 2 1 9 9 C 1.50650 * 122.56457 * 180.31046 * 7 6 5 10 10 H 1.09005 * 109.22268 * 102.71976 * 9 7 6 11 11 N 1.46899 * 109.25130 * 222.16454 * 9 7 6 12 12 C 1.46896 * 110.99945 * 207.07983 * 11 9 7 13 13 C 1.50707 * 109.47314 * 185.15727 * 12 11 9 14 14 H 1.07997 * 119.99419 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99875 * 179.97438 * 13 12 11 16 16 N 1.31506 * 120.00015 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99400 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46723 * 90.00365 * 17 15 13 19 19 H 1.48496 * 109.46617 * 209.99625 * 17 15 13 20 20 H 1.48492 * 109.47166 * 329.99974 * 17 15 13 21 21 C 1.52732 * 110.59160 * 342.45265 * 9 7 6 22 22 C 1.53326 * 108.36691 * 51.07769 * 21 9 7 23 23 C 1.50653 * 117.69608 * 179.75848 * 6 5 4 24 24 H 1.08996 * 109.46841 * 60.00975 * 1 2 3 25 25 H 1.09000 * 109.46844 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47621 * 300.00153 * 1 2 3 27 27 H 1.07994 * 120.13730 * 0.11199 * 4 3 2 28 28 H 1.08007 * 119.68217 * 179.97438 * 5 4 3 29 29 H 1.07995 * 119.74655 * 0.02562 * 8 3 2 30 30 H 1.00900 * 110.99882 * 331.03255 * 11 9 7 31 31 H 1.08997 * 109.47050 * 305.15818 * 12 11 9 32 32 H 1.09002 * 109.47196 * 65.15708 * 12 11 9 33 33 H 0.97002 * 119.99700 * 180.02562 * 16 15 13 34 34 H 1.09004 * 109.68191 * 170.80123 * 21 9 7 35 35 H 1.09001 * 109.68271 * 291.35455 * 21 9 7 36 36 H 1.08998 * 109.68640 * 49.77789 * 22 21 9 37 37 H 1.09006 * 109.68057 * 170.33338 * 22 21 9 38 38 H 1.09006 * 109.24907 * 42.22367 * 23 6 5 39 39 H 1.08993 * 109.25250 * 282.80068 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2937 2.3770 -0.0005 5 6 1.9293 3.6000 -0.0023 6 6 3.3167 3.6768 -0.0042 7 6 4.0654 2.5210 -0.0004 8 6 3.4281 1.2877 0.0005 9 6 5.5718 2.5307 0.0048 10 1 5.9287 2.3073 1.0102 11 7 6.0660 1.5049 -0.9235 12 6 7.3940 1.0248 -0.5190 13 6 7.9216 0.0706 -1.5594 14 1 7.3292 -0.1568 -2.4333 15 6 9.1604 -0.5121 -1.3953 16 7 9.8813 -0.2356 -0.3309 17 14 9.8139 -1.6955 -2.6846 18 1 10.5804 -0.9393 -3.7072 19 1 10.7034 -2.6921 -2.0361 20 1 8.6774 -2.3956 -3.3353 21 6 6.1017 3.8969 -0.4258 22 6 5.4060 4.9724 0.4169 23 6 3.9420 5.0474 -0.0117 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.2149 2.3264 0.0009 28 1 1.3433 4.5073 -0.0032 29 1 4.0151 0.3812 0.0005 30 1 5.4123 0.7400 -0.9984 31 1 8.0735 1.8719 -0.4251 32 1 7.3184 0.5116 0.4397 33 1 10.7530 -0.6453 -0.2157 34 1 7.1784 3.9413 -0.2619 35 1 5.8836 4.0593 -1.4814 36 1 5.4665 4.7078 1.4725 37 1 5.8869 5.9365 0.2514 38 1 3.3986 5.6942 0.6772 39 1 3.8828 5.4640 -1.0171 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092383463.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:20 Heat of formation + Delta-G solvation = -44.118000 kcal Electronic energy + Delta-G solvation = -19416.756794 eV Core-core repulsion = 16515.907545 eV Total energy + Delta-G solvation = -2900.849250 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.50026 -39.71352 -37.18342 -35.74955 -34.60283 -32.23474 -30.67309 -29.88375 -28.08659 -27.39861 -24.60118 -23.89477 -23.22123 -22.21621 -20.37449 -19.09601 -18.29276 -17.28723 -16.91955 -16.75995 -16.60128 -16.07376 -15.67755 -15.36660 -14.97099 -14.49095 -14.38391 -14.15960 -13.86854 -13.74145 -13.52486 -13.15667 -12.89015 -12.88376 -12.62943 -12.58188 -12.14510 -11.98265 -11.87956 -11.62672 -11.53198 -11.25299 -11.13489 -10.68063 -9.91242 -9.16245 -8.93031 -8.24237 -6.35851 0.33426 0.46021 1.39040 1.41472 1.52888 2.38295 2.38533 2.73104 3.08400 3.53959 3.65175 3.79975 3.95085 4.08937 4.23291 4.24465 4.27698 4.40057 4.41301 4.44224 4.58662 4.70894 4.73462 4.77691 4.96010 4.98324 5.05744 5.08434 5.16970 5.20676 5.24502 5.37055 5.45920 5.47052 5.61238 5.73922 5.85616 6.00758 6.42058 6.49067 6.65648 6.83155 7.34882 8.87322 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018565 B = 0.005355 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.860010 B = 5227.650714 C = 6489.350487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.344 6.344 3 C 0.114 3.886 4 C -0.202 4.202 5 C -0.076 4.076 6 C -0.114 4.114 7 C -0.044 4.044 8 C -0.179 4.179 9 C 0.122 3.878 10 H 0.027 0.973 11 N -0.683 5.683 12 C 0.211 3.789 13 C -0.536 4.536 14 H 0.061 0.939 15 C 0.003 3.997 16 N -0.933 5.933 17 Si 0.975 3.025 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.266 1.266 21 C -0.101 4.101 22 C -0.113 4.113 23 C -0.069 4.069 24 H 0.068 0.932 25 H 0.114 0.886 26 H 0.069 0.931 27 H 0.159 0.841 28 H 0.162 0.838 29 H 0.103 0.897 30 H 0.331 0.669 31 H 0.006 0.994 32 H -0.045 1.045 33 H 0.266 0.734 34 H 0.045 0.955 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.325 9.477 1.869 22.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.259 6.259 3 C 0.069 3.931 4 C -0.221 4.221 5 C -0.093 4.093 6 C -0.115 4.115 7 C -0.045 4.045 8 C -0.199 4.199 9 C 0.012 3.988 10 H 0.044 0.956 11 N -0.315 5.315 12 C 0.084 3.916 13 C -0.575 4.575 14 H 0.079 0.921 15 C -0.195 4.195 16 N -0.573 5.573 17 Si 0.798 3.202 18 H -0.196 1.196 19 H -0.204 1.204 20 H -0.190 1.190 21 C -0.139 4.139 22 C -0.151 4.151 23 C -0.106 4.106 24 H 0.086 0.914 25 H 0.133 0.867 26 H 0.087 0.913 27 H 0.176 0.824 28 H 0.180 0.820 29 H 0.121 0.879 30 H 0.151 0.849 31 H 0.024 0.976 32 H -0.027 1.027 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.109 0.891 38 H 0.119 0.881 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.834 9.684 1.505 22.123 hybrid contribution 0.603 -1.626 0.433 1.788 sum -19.231 8.057 1.938 20.941 Atomic orbital electron populations 1.23353 0.76208 1.05471 1.02498 1.86064 1.23795 1.27133 1.88875 1.18940 0.91604 0.85355 0.97169 1.21463 1.01179 0.91443 1.07996 1.21315 0.93110 0.98339 0.96563 1.19848 0.93943 0.94895 1.02785 1.19497 0.94167 0.92649 0.98166 1.20375 0.92722 0.97929 1.08852 1.20398 0.90271 0.94603 0.93505 0.95554 1.60810 1.04728 1.16003 1.49988 1.19240 0.86240 0.93347 0.92803 1.21504 1.02917 1.26017 1.07013 0.92126 1.25954 0.96869 0.98662 0.98058 1.70089 1.12588 1.45287 1.29364 0.85310 0.78230 0.78149 0.78469 1.19567 1.20424 1.19003 1.21493 0.98980 0.92835 1.00639 1.21556 0.95747 0.98733 0.99084 1.20464 0.94796 0.92091 1.03211 0.91387 0.86742 0.91274 0.82362 0.82009 0.87900 0.84891 0.97596 1.02711 0.92526 0.93644 0.91524 0.92232 0.89097 0.88084 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.82 113.37 1.11 1.41 16 2 O -0.34 -9.63 10.50 -92.42 -0.97 -10.60 16 3 C 0.11 3.38 6.68 22.44 0.15 3.53 16 4 C -0.20 -4.49 9.04 22.30 0.20 -4.29 16 5 C -0.08 -1.59 9.60 22.34 0.21 -1.37 16 6 C -0.11 -3.02 5.74 -19.83 -0.11 -3.14 16 7 C -0.04 -1.52 5.55 -19.86 -0.11 -1.63 16 8 C -0.18 -6.39 8.77 22.46 0.20 -6.19 16 9 C 0.12 4.88 2.52 44.06 0.11 4.99 16 10 H 0.03 1.16 7.82 -2.38 -0.02 1.15 16 11 N -0.68 -32.72 6.26 -500.01 -3.13 -35.85 16 12 C 0.21 12.11 5.20 85.56 0.44 12.55 16 13 C -0.54 -32.34 9.36 25.60 0.24 -32.10 16 14 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 15 C 0.00 0.17 5.46 84.66 0.46 0.63 16 16 N -0.93 -58.13 13.29 21.45 0.28 -57.84 16 17 Si 0.97 45.91 29.54 68.60 2.03 47.94 16 18 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 21 C -0.10 -3.53 5.41 30.61 0.17 -3.36 16 22 C -0.11 -2.80 5.98 30.61 0.18 -2.62 16 23 C -0.07 -1.43 5.67 29.74 0.17 -1.26 16 24 H 0.07 0.88 7.67 -2.39 -0.02 0.86 16 25 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.07 0.86 7.67 -2.39 -0.02 0.85 16 27 H 0.16 2.35 6.33 -2.91 -0.02 2.33 16 28 H 0.16 2.10 8.05 -2.91 -0.02 2.07 16 29 H 0.10 4.10 6.56 -2.91 -0.02 4.08 16 30 H 0.33 15.69 6.09 -89.69 -0.55 15.14 16 31 H 0.01 0.36 7.55 -2.39 -0.02 0.34 16 32 H -0.04 -2.77 8.14 -2.39 -0.02 -2.79 16 33 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 34 H 0.04 1.75 7.66 -2.39 -0.02 1.73 16 35 H 0.07 2.36 8.10 -2.39 -0.02 2.34 16 36 H 0.06 1.51 8.10 -2.39 -0.02 1.49 16 37 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 38 H 0.10 1.48 8.13 -2.38 -0.02 1.46 16 39 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -72.20 314.10 2.13 -70.07 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.49 Total: 19.13 kcal Atomic # 6 Polarization: -36.28 SS G_CDS: 3.43 Total: -32.85 kcal Atomic # 7 Polarization: -90.85 SS G_CDS: -2.84 Total: -93.70 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -0.97 Total: -10.60 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -72.20 2.13 -70.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092383463.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.952 kcal (2) G-P(sol) polarization free energy of solvation -72.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds