Wall clock time and date at job start Mon Mar 30 2020 06:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 119.99791 * 2 1 4 4 O 1.42895 * 109.46942 * 135.00144 * 3 2 1 5 5 C 1.35905 * 117.00140 * 179.97438 * 4 3 2 6 6 C 1.38729 * 120.05757 * 179.97438 * 5 4 3 7 7 C 1.38149 * 119.94196 * 180.02562 * 6 5 4 8 8 C 1.38266 * 120.05670 * 0.02572 * 7 6 5 9 9 C 1.50692 * 119.94304 * 179.97438 * 8 7 6 10 10 N 1.46509 * 109.47222 * 89.99917 * 9 8 7 11 11 C 1.36930 * 120.00297 * 90.11094 * 10 9 8 12 12 H 1.07997 * 120.00494 * 218.73872 * 11 10 9 13 13 C 1.38815 * 119.99869 * 38.73711 * 11 10 9 14 14 N 1.31623 * 119.99816 * 214.67080 * 13 11 10 15 15 Si 1.86798 * 120.00176 * 34.66539 * 13 11 10 16 16 H 1.48501 * 109.46827 * 84.85327 * 15 13 11 17 17 H 1.48499 * 109.47315 * 204.85595 * 15 13 11 18 18 H 1.48497 * 109.47251 * 324.85782 * 15 13 11 19 19 C 1.46501 * 119.99661 * 270.38851 * 10 9 8 20 20 C 1.52999 * 109.47230 * 274.23917 * 19 10 9 21 21 C 1.38268 * 120.11240 * 0.24571 * 8 7 6 22 22 C 1.38146 * 120.05379 * 359.45656 * 21 8 7 23 23 H 1.07996 * 120.00316 * 359.97438 * 1 2 3 24 24 H 1.08004 * 120.00216 * 180.02562 * 1 2 3 25 25 H 1.07995 * 119.99591 * 180.02562 * 2 1 3 26 26 H 1.08997 * 109.47000 * 14.99671 * 3 2 1 27 27 H 1.09004 * 109.46868 * 254.99892 * 3 2 1 28 28 H 1.07998 * 120.03085 * 359.97438 * 6 5 4 29 29 H 1.08001 * 119.96825 * 179.97438 * 7 6 5 30 30 H 1.08995 * 109.47345 * 330.00006 * 9 8 7 31 31 H 1.09002 * 109.47549 * 209.99562 * 9 8 7 32 32 H 0.97005 * 119.99509 * 179.97438 * 14 13 11 33 33 H 1.09002 * 109.47420 * 34.24238 * 19 10 9 34 34 H 1.09000 * 109.46737 * 154.23826 * 19 10 9 35 35 H 1.09000 * 109.47260 * 304.88708 * 20 19 10 36 36 H 1.09004 * 109.46855 * 64.88406 * 20 19 10 37 37 H 1.09001 * 109.46796 * 184.87953 * 20 19 10 38 38 H 1.08002 * 119.97221 * 179.71144 * 21 8 7 39 39 H 1.08001 * 120.02759 * 180.24765 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9526 5 6 3.9097 2.3449 1.0782 6 6 4.9599 2.3524 1.9847 7 6 5.7540 3.4757 2.1107 8 6 5.5026 4.5922 1.3348 9 6 6.3701 5.8164 1.4749 10 7 7.4975 5.7251 0.5438 11 6 7.3832 6.2346 -0.7221 12 1 7.8228 5.7097 -1.5573 13 6 6.7021 7.4258 -0.9319 14 7 6.0024 7.5987 -2.0332 15 14 6.7784 8.7834 0.3490 16 1 7.9970 9.6031 0.1293 17 1 5.5744 9.6446 0.2299 18 1 6.8245 8.1818 1.7058 19 6 8.7453 5.0833 0.9651 20 6 9.6295 6.1072 1.6796 21 6 4.4530 4.5893 0.4347 22 6 3.6598 3.4663 0.3004 23 1 -0.5400 0.9352 0.0004 24 1 -0.5401 -0.9353 0.0004 25 1 1.8499 -0.9353 -0.0004 26 1 1.3854 2.1160 0.2659 27 1 2.4755 1.4867 -0.9927 28 1 5.1559 1.4810 2.5918 29 1 6.5714 3.4821 2.8166 30 1 6.7463 5.8803 2.4958 31 1 5.7826 6.7060 1.2478 32 1 5.5262 8.4311 -2.1796 33 1 8.5197 4.2612 1.6443 34 1 9.2692 4.6983 0.0902 35 1 9.7837 6.9696 1.0310 36 1 9.1427 6.4278 2.6007 37 1 10.5921 5.6537 1.9162 38 1 4.2558 5.4643 -0.1669 39 1 2.8426 3.4631 -0.4057 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092398627.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:36 Heat of formation + Delta-G solvation = 29.953669 kcal Electronic energy + Delta-G solvation = -19275.525788 eV Core-core repulsion = 16377.888527 eV Total energy + Delta-G solvation = -2897.637261 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.76642 -37.65988 -35.73093 -34.10609 -31.97639 -30.87521 -30.44256 -28.75798 -26.72945 -25.07513 -23.67907 -22.25129 -21.06744 -20.02042 -19.89071 -17.84588 -16.89985 -16.20238 -15.63134 -15.21160 -14.65671 -14.53715 -14.20408 -13.86686 -13.43741 -13.24930 -12.90924 -12.80471 -12.51866 -12.33270 -12.03497 -11.80701 -11.38768 -11.22242 -11.15897 -10.78562 -10.65516 -10.51870 -10.34575 -9.99303 -9.97842 -9.66572 -9.51623 -8.45754 -8.40943 -7.56004 -6.80503 -6.10730 -3.36201 1.88968 1.90289 2.01165 3.36634 3.48172 3.52940 3.53249 4.29697 4.54708 4.72026 4.88404 5.10305 5.21248 5.28131 5.34840 5.38187 5.42708 5.59135 5.73221 5.89098 5.92316 5.99727 6.12150 6.27764 6.29188 6.30268 6.31965 6.42487 6.52145 6.63471 6.75889 6.81555 6.82797 6.97555 7.08441 7.29823 7.41206 7.80533 8.01293 8.40508 9.00351 9.70996 10.17041 11.04856 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.025344 B = 0.005043 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.552851 B = 5551.056783 C = 6221.613843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.150 4.150 3 C 0.086 3.914 4 O -0.319 6.319 5 C 0.106 3.894 6 C -0.158 4.158 7 C -0.082 4.082 8 C -0.111 4.111 9 C 0.183 3.817 10 N -0.594 5.594 11 C -0.274 4.274 12 H 0.072 0.928 13 C 0.050 3.950 14 N -0.877 5.877 15 Si 0.843 3.157 16 H -0.288 1.288 17 H -0.296 1.296 18 H -0.261 1.261 19 C 0.143 3.857 20 C -0.171 4.171 21 C -0.052 4.052 22 C -0.208 4.208 23 H 0.099 0.901 24 H 0.105 0.895 25 H 0.118 0.882 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.263 0.737 33 H 0.036 0.964 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.040 0.960 37 H 0.039 0.961 38 H 0.129 0.871 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.453 -10.715 6.732 14.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.168 4.168 3 C 0.011 3.989 4 O -0.234 6.234 5 C 0.062 3.938 6 C -0.177 4.177 7 C -0.101 4.101 8 C -0.114 4.114 9 C 0.058 3.942 10 N -0.315 5.315 11 C -0.402 4.402 12 H 0.090 0.910 13 C -0.152 4.152 14 N -0.516 5.516 15 Si 0.670 3.330 16 H -0.215 1.215 17 H -0.223 1.223 18 H -0.186 1.186 19 C 0.017 3.983 20 C -0.230 4.230 21 C -0.071 4.071 22 C -0.227 4.227 23 H 0.117 0.883 24 H 0.123 0.877 25 H 0.136 0.864 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.147 0.853 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.527 -10.775 6.691 14.264 hybrid contribution -0.053 1.060 0.287 1.100 sum -6.580 -9.715 6.978 13.651 Atomic orbital electron populations 1.23851 0.95456 1.02394 0.99887 1.22722 0.95640 0.97990 1.00407 1.21744 0.88186 0.96248 0.92700 1.86000 1.42268 1.36480 1.58622 1.18871 0.92262 0.85905 0.96810 1.20233 0.96555 0.99646 1.01234 1.20795 0.98071 0.92222 0.98980 1.20915 0.95963 0.98403 0.96168 1.20207 0.88429 0.92795 0.92814 1.44095 1.06920 1.67668 1.12821 1.18628 1.35768 1.02517 0.83267 0.91005 1.25459 0.97018 0.97451 0.95298 1.70099 1.27467 1.25622 1.28371 0.87489 0.77117 0.84045 0.84314 1.21519 1.22327 1.18624 1.20889 0.87159 0.93287 0.96920 1.22357 0.98683 1.01515 1.00464 1.20989 0.92933 0.97515 0.95613 1.21187 1.03788 0.94510 1.03207 0.88255 0.87653 0.86417 0.91689 0.91050 0.86264 0.86280 0.93757 0.92041 0.92735 0.94576 0.92966 0.92632 0.94109 0.94159 0.85261 0.86356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.51 14.31 29.01 0.42 -1.10 16 2 C -0.15 -1.54 9.89 -36.03 -0.36 -1.89 16 3 C 0.09 1.07 5.15 36.00 0.19 1.26 16 4 O -0.32 -4.97 10.12 -19.44 -0.20 -5.17 16 5 C 0.11 1.82 6.69 -39.21 -0.26 1.56 16 6 C -0.16 -2.64 9.99 -39.43 -0.39 -3.03 16 7 C -0.08 -1.43 9.69 -39.60 -0.38 -1.81 16 8 C -0.11 -2.23 5.46 -104.60 -0.57 -2.80 16 9 C 0.18 3.94 4.30 -5.19 -0.02 3.92 16 10 N -0.59 -13.81 2.01 -174.61 -0.35 -14.16 16 11 C -0.27 -7.44 9.73 -15.06 -0.15 -7.58 16 12 H 0.07 2.14 8.06 -52.49 -0.42 1.72 16 13 C 0.05 1.39 5.01 -17.43 -0.09 1.30 16 14 N -0.88 -25.59 13.97 55.49 0.78 -24.81 16 15 Si 0.84 20.96 26.60 -169.99 -4.52 16.43 16 16 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 17 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 18 H -0.26 -6.16 5.74 56.52 0.32 -5.84 16 19 C 0.14 2.84 6.39 -4.04 -0.03 2.81 16 20 C -0.17 -3.08 10.24 37.16 0.38 -2.70 16 21 C -0.05 -1.05 9.69 -39.60 -0.38 -1.43 16 22 C -0.21 -3.71 9.04 -39.43 -0.36 -4.06 16 23 H 0.10 0.78 7.90 -52.49 -0.41 0.36 16 24 H 0.11 0.71 8.06 -52.48 -0.42 0.28 16 25 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 26 H 0.06 0.75 7.38 -51.93 -0.38 0.37 16 27 H 0.07 0.87 7.66 -51.93 -0.40 0.47 16 28 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 29 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 30 H 0.04 0.87 8.02 -51.93 -0.42 0.45 16 31 H 0.06 1.43 4.47 -51.93 -0.23 1.19 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.04 0.64 8.10 -51.93 -0.42 0.22 16 34 H 0.05 1.05 8.00 -51.93 -0.42 0.63 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.13 2.85 8.06 -52.49 -0.42 2.42 16 39 H 0.12 1.85 6.30 -52.49 -0.33 1.52 16 LS Contribution 327.15 15.07 4.93 4.93 Total: -1.00 -29.54 327.15 -7.40 -36.94 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -6.03 Total: 1.41 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -2.01 Total: -15.57 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.42 Total: -38.98 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -0.20 Total: -5.17 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.52 Total: 16.43 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.54 -7.40 -36.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398627.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.894 kcal (2) G-P(sol) polarization free energy of solvation -29.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds