Wall clock time and date at job start Mon Mar 30 2020 06:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99903 * 2 1 4 4 O 1.42903 * 109.47074 * 134.99852 * 3 2 1 5 5 C 1.35903 * 116.99960 * 180.02562 * 4 3 2 6 6 C 1.38752 * 120.05428 * 359.97438 * 5 4 3 7 7 C 1.38126 * 119.94185 * 180.02562 * 6 5 4 8 8 C 1.38284 * 120.05482 * 0.02562 * 7 6 5 9 9 C 1.38250 * 120.11699 * 359.97438 * 8 7 6 10 10 C 1.38169 * 120.05075 * 359.97438 * 9 8 7 11 11 C 1.50702 * 120.02542 * 179.97438 * 10 9 8 12 12 N 1.46501 * 109.47365 * 260.01967 * 11 10 9 13 13 C 1.36928 * 120.00239 * 270.00525 * 12 11 10 14 14 H 1.07999 * 120.00306 * 136.04191 * 13 12 11 15 15 C 1.38820 * 119.99849 * 316.04478 * 13 12 11 16 16 N 1.31611 * 120.00018 * 353.70344 * 15 13 12 17 17 Si 1.86797 * 119.99847 * 173.70676 * 15 13 12 18 18 H 1.48502 * 109.47147 * 89.99780 * 17 15 13 19 19 H 1.48509 * 109.47102 * 209.99954 * 17 15 13 20 20 H 1.48499 * 109.47154 * 329.99892 * 17 15 13 21 21 C 1.46504 * 119.99510 * 89.99938 * 12 11 10 22 22 C 1.53006 * 109.46640 * 91.10079 * 21 12 11 23 23 H 1.08006 * 119.99371 * 179.97438 * 1 2 3 24 24 H 1.07997 * 120.00466 * 0.02562 * 1 2 3 25 25 H 1.07999 * 119.99960 * 179.97438 * 2 1 3 26 26 H 1.08994 * 109.46966 * 15.00104 * 3 2 1 27 27 H 1.08996 * 109.47250 * 254.99456 * 3 2 1 28 28 H 1.07997 * 120.03120 * 0.02562 * 6 5 4 29 29 H 1.07998 * 119.96988 * 179.72159 * 7 6 5 30 30 H 1.08003 * 119.94345 * 179.97438 * 8 7 6 31 31 H 1.07996 * 119.97639 * 179.97438 * 9 8 7 32 32 H 1.08998 * 109.46771 * 20.02432 * 11 10 9 33 33 H 1.09001 * 109.46427 * 140.02355 * 11 10 9 34 34 H 0.97001 * 119.99994 * 179.97438 * 16 15 13 35 35 H 1.08994 * 109.46893 * 211.09928 * 21 12 11 36 36 H 1.08994 * 109.47352 * 331.10151 * 21 12 11 37 37 H 1.09002 * 109.46734 * 299.99664 * 22 21 12 38 38 H 1.09003 * 109.47011 * 59.99783 * 22 21 12 39 39 H 1.08998 * 109.46898 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9090 2.3454 1.0790 6 6 3.6588 3.4670 0.3015 7 6 4.4557 4.5876 0.4314 8 6 5.5025 4.5921 1.3350 9 6 5.7539 3.4759 2.1109 10 6 4.9590 2.3527 1.9855 11 6 5.2339 1.1360 2.8311 12 7 5.9705 0.1475 2.0397 13 6 5.2899 -0.7933 1.3140 14 1 5.5954 -1.0208 0.3034 15 6 4.2071 -1.4547 1.8772 16 7 3.9105 -1.2698 3.1461 17 14 3.1710 -2.6071 0.8342 18 1 3.7312 -3.9804 0.9086 19 1 1.7752 -2.6137 1.3414 20 1 3.1829 -2.1434 -0.5765 21 6 7.4353 0.1656 2.0246 22 6 7.9679 -0.7409 3.1363 23 1 -0.5399 -0.9354 -0.0004 24 1 -0.5401 0.9352 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3855 2.1160 0.2660 27 1 2.4756 1.4867 -0.9926 28 1 2.8417 3.4638 -0.4047 29 1 4.2642 5.4593 -0.1768 30 1 6.1248 5.4692 1.4348 31 1 6.5723 3.4817 2.8156 32 1 5.8284 1.4232 3.6984 33 1 4.2900 0.7045 3.1643 34 1 3.1537 -1.7316 3.5396 35 1 7.7932 -0.1939 1.0599 36 1 7.7878 1.1842 2.1863 37 1 7.6100 -0.3813 4.1010 38 1 7.6154 -1.7596 2.9746 39 1 9.0578 -0.7278 3.1248 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092398890.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:38 Heat of formation + Delta-G solvation = 35.759646 kcal Electronic energy + Delta-G solvation = -20478.407595 eV Core-core repulsion = 17581.022100 eV Total energy + Delta-G solvation = -2897.385495 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.49033 -36.95445 -35.60760 -33.68553 -31.64593 -31.23090 -29.34373 -28.32036 -26.17095 -25.32395 -23.40096 -21.55350 -21.21521 -19.85971 -19.56847 -17.42830 -16.51580 -15.93555 -15.20955 -14.93818 -14.54245 -14.33613 -13.89235 -13.78909 -13.47854 -12.89992 -12.69753 -12.27191 -12.06124 -11.99121 -11.61068 -11.23411 -11.20849 -11.05650 -10.74347 -10.59098 -10.33388 -10.31762 -10.04005 -9.83802 -9.74271 -9.65408 -9.17838 -8.36178 -8.20387 -7.33978 -6.35452 -5.61955 -3.30304 1.99510 2.15528 2.37761 3.31704 3.40196 3.42122 4.09216 4.42677 4.56859 5.15730 5.32522 5.39390 5.47475 5.53627 5.58953 5.66218 5.70342 5.79915 5.95681 6.07208 6.21698 6.24565 6.28438 6.52887 6.59827 6.66192 6.74950 6.76751 6.80441 6.89835 7.00647 7.08152 7.16489 7.27761 7.36640 7.54731 7.85840 8.00313 8.28209 8.73276 9.35074 9.93692 10.54197 11.37009 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.013953 B = 0.011819 C = 0.006927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.240168 B = 2368.403804 C = 4041.194791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.144 4.144 3 C 0.085 3.915 4 O -0.259 6.259 5 C 0.150 3.850 6 C -0.224 4.224 7 C -0.104 4.104 8 C -0.169 4.169 9 C -0.092 4.092 10 C -0.104 4.104 11 C 0.178 3.822 12 N -0.575 5.575 13 C -0.241 4.241 14 H 0.050 0.950 15 C 0.038 3.962 16 N -0.887 5.887 17 Si 0.884 3.116 18 H -0.294 1.294 19 H -0.286 1.286 20 H -0.276 1.276 21 C 0.144 3.856 22 C -0.160 4.160 23 H 0.101 0.899 24 H 0.097 0.903 25 H 0.118 0.882 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.115 0.885 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.027 0.973 33 H 0.118 0.882 34 H 0.253 0.747 35 H 0.038 0.962 36 H 0.030 0.970 37 H 0.043 0.957 38 H 0.053 0.947 39 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.821 7.758 -3.985 8.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.161 4.161 3 C 0.010 3.990 4 O -0.171 6.171 5 C 0.104 3.896 6 C -0.243 4.243 7 C -0.123 4.123 8 C -0.187 4.187 9 C -0.111 4.111 10 C -0.108 4.108 11 C 0.052 3.948 12 N -0.294 5.294 13 C -0.371 4.371 14 H 0.067 0.933 15 C -0.162 4.162 16 N -0.530 5.530 17 Si 0.716 3.284 18 H -0.222 1.222 19 H -0.213 1.213 20 H -0.202 1.202 21 C 0.018 3.982 22 C -0.220 4.220 23 H 0.119 0.881 24 H 0.115 0.885 25 H 0.136 0.864 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.133 0.867 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.134 0.866 32 H 0.046 0.954 33 H 0.135 0.865 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -1.941 7.455 -3.767 8.575 hybrid contribution -0.712 -0.429 -0.834 1.178 sum -2.653 7.026 -4.601 8.808 Atomic orbital electron populations 1.23707 0.95340 1.01851 1.01828 1.23054 0.95754 0.98794 0.98516 1.21665 0.88801 0.95622 0.92936 1.86575 1.40255 1.34023 1.56238 1.18897 0.91056 0.85455 0.94238 1.21140 1.03910 0.95064 1.04232 1.20632 0.95842 0.97111 0.98695 1.20851 0.99681 0.98658 0.99519 1.20866 0.98556 0.92567 0.99143 1.20717 0.92938 0.97956 0.99196 1.20050 1.00805 0.84441 0.89467 1.43662 0.98900 1.31283 1.55595 1.18813 1.11347 1.12927 0.93999 0.93257 1.25144 0.99783 0.96813 0.94505 1.69681 1.28966 1.43448 1.10908 0.86789 0.80065 0.81308 0.80208 1.22190 1.21255 1.20240 1.20849 0.85719 0.95621 0.95990 1.22252 0.97160 1.02060 1.00481 0.88082 0.88471 0.86444 0.92515 0.91840 0.86723 0.87225 0.87258 0.86573 0.95431 0.86500 0.93684 0.94386 0.95117 0.93829 0.92743 0.95316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.89 14.31 29.01 0.42 -2.48 16 2 C -0.14 -2.67 9.77 -36.03 -0.35 -3.02 16 3 C 0.09 1.54 5.15 36.00 0.19 1.73 16 4 O -0.26 -5.79 7.64 -19.43 -0.15 -5.94 16 5 C 0.15 3.18 6.66 -39.22 -0.26 2.91 16 6 C -0.22 -4.00 9.04 -39.43 -0.36 -4.35 16 7 C -0.10 -1.68 10.04 -39.61 -0.40 -2.08 16 8 C -0.17 -2.75 10.04 -39.56 -0.40 -3.15 16 9 C -0.09 -1.70 9.67 -39.60 -0.38 -2.08 16 10 C -0.10 -2.25 5.48 -104.47 -0.57 -2.82 16 11 C 0.18 4.28 5.08 -5.19 -0.03 4.25 16 12 N -0.57 -14.38 2.39 -174.61 -0.42 -14.80 16 13 C -0.24 -6.53 8.49 -15.06 -0.13 -6.66 16 14 H 0.05 1.38 7.84 -52.49 -0.41 0.97 16 15 C 0.04 1.02 4.55 -17.43 -0.08 0.94 16 16 N -0.89 -25.06 11.05 55.49 0.61 -24.44 16 17 Si 0.88 21.55 25.76 -169.99 -4.38 17.17 16 18 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.52 6.70 56.52 0.38 -6.14 16 21 C 0.14 3.15 6.39 -4.04 -0.03 3.12 16 22 C -0.16 -3.28 10.24 37.16 0.38 -2.90 16 23 H 0.10 1.42 8.06 -52.48 -0.42 0.99 16 24 H 0.10 1.23 7.90 -52.49 -0.41 0.82 16 25 H 0.12 2.51 2.58 -52.49 -0.14 2.37 16 26 H 0.06 0.89 7.38 -51.93 -0.38 0.50 16 27 H 0.06 1.06 7.66 -51.93 -0.40 0.66 16 28 H 0.11 1.77 6.30 -52.49 -0.33 1.44 16 29 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 30 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 31 H 0.12 1.93 8.04 -52.49 -0.42 1.51 16 32 H 0.03 0.63 7.93 -51.93 -0.41 0.22 16 33 H 0.12 3.20 5.12 -51.93 -0.27 2.93 16 34 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.04 0.82 8.05 -51.93 -0.42 0.40 16 36 H 0.03 0.61 8.06 -51.93 -0.42 0.19 16 37 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 316.43 15.07 4.77 4.77 Total: -1.00 -28.93 316.43 -7.26 -36.20 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -5.70 Total: 3.61 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -2.00 Total: -16.56 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.20 Total: -39.24 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.15 Total: -5.94 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.38 Total: 17.17 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.93 -7.26 -36.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398890.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.957 kcal (2) G-P(sol) polarization free energy of solvation -28.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds