Wall clock time and date at job start Mon Mar 30 2020 06:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99903 * 2 1 4 4 O 1.42903 * 109.47074 * 134.99852 * 3 2 1 5 5 C 1.35903 * 116.99960 * 180.02562 * 4 3 2 6 6 C 1.38752 * 120.05428 * 359.97438 * 5 4 3 7 7 C 1.38126 * 119.94185 * 180.02562 * 6 5 4 8 8 C 1.38284 * 120.05482 * 0.02562 * 7 6 5 9 9 C 1.38250 * 120.11699 * 359.97438 * 8 7 6 10 10 C 1.38169 * 120.05075 * 359.97438 * 9 8 7 11 11 C 1.50702 * 120.02542 * 179.97438 * 10 9 8 12 12 N 1.46501 * 109.47365 * 260.01967 * 11 10 9 13 13 C 1.36928 * 120.00239 * 270.00525 * 12 11 10 14 14 H 1.07999 * 120.00306 * 136.04191 * 13 12 11 15 15 C 1.38820 * 119.99849 * 316.04478 * 13 12 11 16 16 N 1.31611 * 120.00018 * 353.70344 * 15 13 12 17 17 Si 1.86797 * 119.99847 * 173.70676 * 15 13 12 18 18 H 1.48502 * 109.47147 * 89.99780 * 17 15 13 19 19 H 1.48509 * 109.47102 * 209.99954 * 17 15 13 20 20 H 1.48499 * 109.47154 * 329.99892 * 17 15 13 21 21 C 1.46504 * 119.99510 * 89.99938 * 12 11 10 22 22 C 1.53006 * 109.46640 * 91.10079 * 21 12 11 23 23 H 1.08006 * 119.99371 * 179.97438 * 1 2 3 24 24 H 1.07997 * 120.00466 * 0.02562 * 1 2 3 25 25 H 1.07999 * 119.99960 * 179.97438 * 2 1 3 26 26 H 1.08994 * 109.46966 * 15.00104 * 3 2 1 27 27 H 1.08996 * 109.47250 * 254.99456 * 3 2 1 28 28 H 1.07997 * 120.03120 * 0.02562 * 6 5 4 29 29 H 1.07998 * 119.96988 * 179.72159 * 7 6 5 30 30 H 1.08003 * 119.94345 * 179.97438 * 8 7 6 31 31 H 1.07996 * 119.97639 * 179.97438 * 9 8 7 32 32 H 1.08998 * 109.46771 * 20.02432 * 11 10 9 33 33 H 1.09001 * 109.46427 * 140.02355 * 11 10 9 34 34 H 0.97001 * 119.99994 * 179.97438 * 16 15 13 35 35 H 1.08994 * 109.46893 * 211.09928 * 21 12 11 36 36 H 1.08994 * 109.47352 * 331.10151 * 21 12 11 37 37 H 1.09002 * 109.46734 * 299.99664 * 22 21 12 38 38 H 1.09003 * 109.47011 * 59.99783 * 22 21 12 39 39 H 1.08998 * 109.46898 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9090 2.3454 1.0790 6 6 3.6588 3.4670 0.3015 7 6 4.4557 4.5876 0.4314 8 6 5.5025 4.5921 1.3350 9 6 5.7539 3.4759 2.1109 10 6 4.9590 2.3527 1.9855 11 6 5.2339 1.1360 2.8311 12 7 5.9705 0.1475 2.0397 13 6 5.2899 -0.7933 1.3140 14 1 5.5954 -1.0208 0.3034 15 6 4.2071 -1.4547 1.8772 16 7 3.9105 -1.2698 3.1461 17 14 3.1710 -2.6071 0.8342 18 1 3.7312 -3.9804 0.9086 19 1 1.7752 -2.6137 1.3414 20 1 3.1829 -2.1434 -0.5765 21 6 7.4353 0.1656 2.0246 22 6 7.9679 -0.7409 3.1363 23 1 -0.5399 -0.9354 -0.0004 24 1 -0.5401 0.9352 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3855 2.1160 0.2660 27 1 2.4756 1.4867 -0.9926 28 1 2.8417 3.4638 -0.4047 29 1 4.2642 5.4593 -0.1768 30 1 6.1248 5.4692 1.4348 31 1 6.5723 3.4817 2.8156 32 1 5.8284 1.4232 3.6984 33 1 4.2900 0.7045 3.1643 34 1 3.1537 -1.7316 3.5396 35 1 7.7932 -0.1939 1.0599 36 1 7.7878 1.1842 2.1863 37 1 7.6100 -0.3813 4.1010 38 1 7.6154 -1.7596 2.9746 39 1 9.0578 -0.7278 3.1248 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092398890.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:38 Heat of formation + Delta-G solvation = 20.192796 kcal Electronic energy + Delta-G solvation = -20479.082624 eV Core-core repulsion = 17581.022100 eV Total energy + Delta-G solvation = -2898.060524 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.93342 -38.41599 -37.39427 -35.01148 -33.64461 -32.76366 -30.76647 -30.06428 -27.60394 -27.04833 -25.23038 -22.94124 -22.77085 -21.54970 -20.98369 -18.94643 -18.37154 -17.42683 -16.70527 -16.44216 -16.31768 -15.88226 -15.58636 -15.21739 -15.15105 -14.43411 -14.23256 -13.94861 -13.51315 -13.43691 -13.22400 -12.99841 -12.85137 -12.70868 -12.36207 -12.22916 -12.06844 -11.95538 -11.75081 -11.57623 -11.45883 -11.36200 -10.47570 -10.42110 -9.60471 -8.78806 -8.34989 -7.65821 -5.39074 0.60660 0.76889 1.07738 1.34881 1.41297 1.44912 2.52393 2.73494 3.04556 3.46932 3.85905 3.96386 4.00552 4.09786 4.18858 4.31086 4.40168 4.45734 4.48337 4.61500 4.72913 4.82861 4.85070 4.92322 4.95270 4.98881 5.10205 5.32136 5.34304 5.50028 5.60041 5.60987 5.64147 5.68102 5.75113 5.82669 6.04830 6.17714 6.64383 6.87912 7.33860 7.97869 8.52633 9.28158 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.013953 B = 0.011819 C = 0.006927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.240168 B = 2368.403804 C = 4041.194791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.190 4.190 3 C 0.085 3.915 4 O -0.297 6.297 5 C 0.122 3.878 6 C -0.226 4.226 7 C -0.095 4.095 8 C -0.163 4.163 9 C -0.095 4.095 10 C -0.139 4.139 11 C 0.187 3.813 12 N -0.589 5.589 13 C -0.242 4.242 14 H 0.033 0.967 15 C 0.007 3.993 16 N -0.910 5.910 17 Si 0.929 3.071 18 H -0.301 1.301 19 H -0.284 1.284 20 H -0.271 1.271 21 C 0.140 3.860 22 C -0.147 4.147 23 H 0.112 0.888 24 H 0.129 0.871 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.137 0.863 29 H 0.150 0.850 30 H 0.146 0.854 31 H 0.128 0.872 32 H 0.025 0.975 33 H 0.081 0.919 34 H 0.246 0.754 35 H 0.036 0.964 36 H 0.051 0.949 37 H 0.032 0.968 38 H 0.026 0.974 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.047 10.304 -5.162 11.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.208 4.208 3 C 0.010 3.990 4 O -0.210 6.210 5 C 0.076 3.924 6 C -0.244 4.244 7 C -0.113 4.113 8 C -0.181 4.181 9 C -0.113 4.113 10 C -0.142 4.142 11 C 0.062 3.938 12 N -0.310 5.310 13 C -0.373 4.373 14 H 0.051 0.949 15 C -0.191 4.191 16 N -0.555 5.555 17 Si 0.761 3.239 18 H -0.230 1.230 19 H -0.210 1.210 20 H -0.197 1.197 21 C 0.015 3.985 22 C -0.207 4.207 23 H 0.130 0.870 24 H 0.147 0.853 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.154 0.846 29 H 0.167 0.833 30 H 0.164 0.836 31 H 0.146 0.854 32 H 0.044 0.956 33 H 0.099 0.901 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.052 0.948 38 H 0.045 0.955 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.159 10.023 -4.957 11.388 hybrid contribution -0.662 -1.098 -0.503 1.377 sum -2.821 8.925 -5.460 10.836 Atomic orbital electron populations 1.24039 0.94166 1.03877 0.97180 1.22983 0.96993 0.97840 1.02948 1.21822 0.88417 0.96190 0.92584 1.86512 1.41538 1.35332 1.57591 1.19201 0.91469 0.86371 0.95355 1.21429 1.04765 0.94431 1.03824 1.21145 0.94509 0.97539 0.98083 1.21257 0.99805 0.98828 0.98233 1.21061 0.98273 0.92341 0.99671 1.20562 0.95160 0.98154 1.00323 1.19713 0.98786 0.85382 0.89921 1.43839 1.00144 1.31665 1.55375 1.18767 1.11731 1.13339 0.93479 0.94927 1.25503 1.00555 0.97885 0.95119 1.69844 1.29175 1.44360 1.12076 0.86088 0.79002 0.79242 0.79615 1.22988 1.20997 1.19672 1.20961 0.84187 0.97040 0.96314 1.22097 0.99426 0.99823 0.99321 0.87012 0.85293 0.89678 0.90083 0.91219 0.84552 0.83256 0.83602 0.85367 0.95626 0.90150 0.94405 0.94581 0.93111 0.94833 0.95518 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.40 14.31 67.78 0.97 -3.43 16 2 C -0.19 -6.97 9.77 25.65 0.25 -6.72 16 3 C 0.08 3.02 5.15 71.24 0.37 3.38 16 4 O -0.30 -13.51 7.64 -92.45 -0.71 -14.22 16 5 C 0.12 5.13 6.66 22.51 0.15 5.28 16 6 C -0.23 -7.47 9.04 22.37 0.20 -7.27 16 7 C -0.09 -2.64 10.04 22.25 0.22 -2.42 16 8 C -0.16 -4.67 10.04 22.28 0.22 -4.45 16 9 C -0.09 -3.31 9.67 22.26 0.22 -3.09 16 10 C -0.14 -5.98 5.48 -19.77 -0.11 -6.09 16 11 C 0.19 9.31 5.08 85.63 0.43 9.74 16 12 N -0.59 -30.32 2.39 -706.33 -1.69 -32.00 16 13 C -0.24 -13.65 8.49 84.04 0.71 -12.94 16 14 H 0.03 1.92 7.84 -2.91 -0.02 1.90 16 15 C 0.01 0.41 4.55 84.87 0.39 0.79 16 16 N -0.91 -53.69 11.05 21.65 0.24 -53.46 16 17 Si 0.93 46.09 25.76 68.60 1.77 47.86 16 18 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 19 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 20 H -0.27 -12.98 6.70 99.48 0.67 -12.31 16 21 C 0.14 6.13 6.39 86.38 0.55 6.68 16 22 C -0.15 -6.02 10.24 71.98 0.74 -5.28 16 23 H 0.11 2.87 8.06 -2.91 -0.02 2.85 16 24 H 0.13 2.79 7.90 -2.91 -0.02 2.76 16 25 H 0.09 3.69 2.58 -2.91 -0.01 3.68 16 26 H 0.08 2.38 7.38 -2.39 -0.02 2.36 16 27 H 0.07 2.28 7.66 -2.39 -0.02 2.26 16 28 H 0.14 3.80 6.30 -2.91 -0.02 3.78 16 29 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 30 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 31 H 0.13 4.03 8.04 -2.91 -0.02 4.01 16 32 H 0.03 1.21 7.93 -2.39 -0.02 1.19 16 33 H 0.08 4.63 5.12 -2.39 -0.01 4.62 16 34 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 35 H 0.04 1.56 8.05 -2.39 -0.02 1.54 16 36 H 0.05 1.99 8.06 -2.39 -0.02 1.97 16 37 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -66.00 316.43 5.91 -60.09 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.98 Total: 17.54 kcal Atomic # 6 Polarization: -31.13 SS G_CDS: 5.32 Total: -25.81 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -1.45 Total: -85.46 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.71 Total: -14.22 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.77 Total: 47.86 kcal Total: -66.00 5.91 -60.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398890.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.283 kcal (2) G-P(sol) polarization free energy of solvation -66.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds